This locus represents naturally occurring readthrough transcription between the neighboring ACBD7 (acyl-CoA-binding domain-containing protein 7) and DEF (DNA cross-link repair 1C pseudogene 1) genes on chromosome 10. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Oct 2016] See more...

Aliases for ACBD7-DCLRE1CP1 Gene

Subcategory (RNA class) for ACBD7-DCLRE1CP1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ACBD7-DCLRE1CP1 Gene

  • ACBD7-DCLRE1CP1 Readthrough 3
  • HSALNG0076342 164
  • Lnc-ACBD7-1 165

External Ids for ACBD7-DCLRE1CP1 Gene

Previous GeneCards Identifiers for ACBD7-DCLRE1CP1 Gene

  • GC10U902654

Summaries for ACBD7-DCLRE1CP1 Gene

Entrez Gene Summary for ACBD7-DCLRE1CP1 Gene

  • This locus represents naturally occurring readthrough transcription between the neighboring ACBD7 (acyl-CoA-binding domain-containing protein 7) and DEF (DNA cross-link repair 1C pseudogene 1) genes on chromosome 10. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Oct 2016]

GeneCards Summary for ACBD7-DCLRE1CP1 Gene

ACBD7-DCLRE1CP1 (ACBD7-DCLRE1CP1 Readthrough) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ACBD7-DCLRE1CP1 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACBD7-DCLRE1CP1 Gene

Genomics for ACBD7-DCLRE1CP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ACBD7-DCLRE1CP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J015088 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 600.7 +0.2 160 1.6 SP1 HNRNPL PRDM10 ZNF629 KDM1A ZNF692 FOS LARP7 ZNF143 PRDM1 ACBD7 ACBD7-DCLRE1CP1 RF00017-602 RPP38-DT MINDY3 RPP38 piR-50299 OLAH
GH10J015083 Promoter/Enhancer 1.1 ENCODE CraniofacialAtlas 0.7 +4.2 4178 1.6 CREB1 TARDBP FOXA1 IRF2 SP1 SOX6 CEBPA SOX13 SP2 CTBP1 piR-50299 RPP38-DT DCLRE1C ACBD7 RPP38 ACBD7-DCLRE1CP1 piR-34822-036 OLAH
GH10J015043 Promoter/Enhancer 0.8 EPDnew Ensembl 0.3 +45.1 45075 1 CEBPA CEBPB NR3C1 GABPA TRIM24 ATF4 CEBPG OLAH ACBD7 GAPDHP45 RPP38 RPP38-DT DCLRE1CP1 RF00017-600 ACBD7-DCLRE1CP1
GH10J015068 Enhancer 0.5 ENCODE 0.4 +19.8 19759 0.9 SCRT2 CTCF FOSL2 TFAP4 NFIL3 HLF NR3C1 OR7E26P RF00017-601 piR-34822-036 ACBD7 ACBD7-DCLRE1CP1 OLAH
GH10J015035 Enhancer 0.7 ENCODE 0.2 +52.8 52842 1.4 ZNF512 LEF1 IKZF1 JUND PKNOX1 HDAC1 SOX6 MGA ZNF766 MTA3 DCLRE1CP1 OLAH RF00017-600 ACBD7 ACBD7-DCLRE1CP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACBD7-DCLRE1CP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ACBD7-DCLRE1CP1 Gene

Genomic Locations for ACBD7-DCLRE1CP1 Gene
chr10:15,015,072-15,088,776
(GRCh38/hg38)
Size:
73,705 bases
Orientation:
Minus strand

Genomic View for ACBD7-DCLRE1CP1 Gene

Genes around ACBD7-DCLRE1CP1 on UCSC Golden Path with GeneCards custom track
ACBD7-DCLRE1CP1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

ACBD7-DCLRE1CP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACBD7-DCLRE1CP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACBD7-DCLRE1CP1 Gene

No data available for Cytogenetic band for ACBD7-DCLRE1CP1 Gene

Proteins for ACBD7-DCLRE1CP1 Gene

Post-translational modifications for ACBD7-DCLRE1CP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACBD7-DCLRE1CP1 Gene

Domains & Families for ACBD7-DCLRE1CP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACBD7-DCLRE1CP1 Gene

Function for ACBD7-DCLRE1CP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACBD7-DCLRE1CP1 Gene

Localization for ACBD7-DCLRE1CP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACBD7-DCLRE1CP1 Gene

Pathways & Interactions for ACBD7-DCLRE1CP1 Gene

PathCards logo

SuperPathways for ACBD7-DCLRE1CP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACBD7-DCLRE1CP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACBD7-DCLRE1CP1 Gene

Drugs & Compounds for ACBD7-DCLRE1CP1 Gene

No Compound Related Data Available

Transcripts for ACBD7-DCLRE1CP1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ACBD7-DCLRE1CP1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008C1531_9606 lncRNA 997 3

RefSeq: NR_144471,

LncBook: HSALNT0159367,

LNCipedia: lnc-ACBD7-1:1,

ACBD7-DCLRE1CP1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ACBD7-DCLRE1CP1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ACBD7-DCLRE1CP1 Gene

No ASD Table

Relevant External Links for ACBD7-DCLRE1CP1 Gene

GeneLoc Exon Structure for
ACBD7-DCLRE1CP1

Expression for ACBD7-DCLRE1CP1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACBD7-DCLRE1CP1 Gene

Orthologs for ACBD7-DCLRE1CP1 Gene

No data available for Orthologs and Evolution for ACBD7-DCLRE1CP1 Gene

Paralogs for ACBD7-DCLRE1CP1 Gene

No data available for Paralogs for ACBD7-DCLRE1CP1 Gene

Variants for ACBD7-DCLRE1CP1 Gene

Additional dbSNP identifiers (rs#s) for ACBD7-DCLRE1CP1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ACBD7-DCLRE1CP1 Gene

Disorders for ACBD7-DCLRE1CP1 Gene

No disorders were found for ACBD7-DCLRE1CP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ACBD7-DCLRE1CP1 Gene

Publications for ACBD7-DCLRE1CP1 Gene

No publications were found for ACBD7-DCLRE1CP1 Gene.

No data available for Mastermind for ACBD7-DCLRE1CP1 Gene

Products for ACBD7-DCLRE1CP1 Gene

Sources for ACBD7-DCLRE1CP1 Gene