Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ACBD3-AS1 Gene

Subcategory (RNA class) for ACBD3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ACBD3-AS1 Gene

  • ACBD3 Antisense RNA 1 2 3 5
  • RP11-275I14.4 3

External Ids for ACBD3-AS1 Gene

Previous GeneCards Identifiers for ACBD3-AS1 Gene

  • GC01U905666

Summaries for ACBD3-AS1 Gene

GeneCards Summary for ACBD3-AS1 Gene

ACBD3-AS1 (ACBD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ACBD3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACBD3-AS1 Gene

Genomics for ACBD3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ACBD3-AS1 Gene

Promoters and enhancers for ACBD3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J226143 Enhancer 0.6 dbSUPER 650.7 -1.4 -1398 5.9 SCRT1 ZNF362 FOXA2 CEBPB MAFG ZNF121 POLR2B POLR2A ZNF624 ZFP91 ACBD3-AS1 ACBD3 RPL34P7 LIN9 LINC01703 GC01P226137
GH01J226149 Enhancer 0.6 ENCODE 650.7 +2.0 1972 0.2 CTCF ESRRA USF1 ZNF362 HLF ZNF384 NFIL3 MITF ATF4 ACBD3-AS1 GC01P226137 ACBD3
GH01J225650 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 50.2 -493.3 -493325 8.6 HDGF PKNOX1 ZFP64 SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF213 ZNF548 ENAH ACBD3 ACBD3-AS1 RPL34P7 LBR LINC01703 LOC105373110 SDE2 ENSG00000272562 H3F3A
GH01J225995 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 38.3 -147.7 -147705 8.8 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF548 SP3 SDE2 ACBD3 ACBD3-AS1 H3F3A RPL34P7 LOC105373110 TMEM63A GC01M225948
GH01J225776 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 38.7 -369.8 -369755 4.2 CLOCK DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 SP3 NFYC ZNF610 SRP9 ACBD3 ACBD3-AS1 LOC105373110 H3F3A LEFTY1 LEFTY3 EPHX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ACBD3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACBD3-AS1 Gene

Genomic Locations for ACBD3-AS1 Gene
chr1:226,148,003-226,155,071
(GRCh38/hg38)
Size:
7,069 bases
Orientation:
Plus strand
chr1:226,335,704-226,342,772
(GRCh37/hg19)
Size:
7,069 bases
Orientation:
Plus strand

Genomic View for ACBD3-AS1 Gene

Genes around ACBD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACBD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACBD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACBD3-AS1 Gene

Proteins for ACBD3-AS1 Gene

Post-translational modifications for ACBD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACBD3-AS1 Gene

Domains & Families for ACBD3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACBD3-AS1 Gene

Function for ACBD3-AS1 Gene

Phenotypes From GWAS Catalog for ACBD3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACBD3-AS1 Gene

Localization for ACBD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACBD3-AS1 Gene

Pathways & Interactions for ACBD3-AS1 Gene

SuperPathways for ACBD3-AS1 Gene

No Data Available

Interacting Proteins for ACBD3-AS1 Gene

Gene Ontology (GO) - Biological Process for ACBD3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACBD3-AS1 Gene

Drugs & Compounds for ACBD3-AS1 Gene

No Compound Related Data Available

Transcripts for ACBD3-AS1 Gene

mRNA/cDNA for ACBD3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACBD3-AS1 Gene

No ASD Table

Relevant External Links for ACBD3-AS1 Gene

GeneLoc Exon Structure for
ACBD3-AS1
ECgene alternative splicing isoforms for
ACBD3-AS1

Expression for ACBD3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACBD3-AS1 Gene

Orthologs for ACBD3-AS1 Gene

Evolution for ACBD3-AS1 Gene

ENSEMBL:
Gene Tree for ACBD3-AS1 (if available)
TreeFam:
Gene Tree for ACBD3-AS1 (if available)

No data available for Orthologs for ACBD3-AS1 Gene

Paralogs for ACBD3-AS1 Gene

No data available for Paralogs for ACBD3-AS1 Gene

Variants for ACBD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ACBD3-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000828870 -- 226,154,476(+) T/C intron_variant
rs1000833370 -- 226,152,002(+) G/A intron_variant
rs1002315050 -- 226,148,954(+) T/C intron_variant
rs1002442787 -- 226,151,496(+) T/G intron_variant
rs1002449383 -- 226,148,625(+) T/C intron_variant

Additional Variant Information for ACBD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACBD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACBD3-AS1 Gene

Disorders for ACBD3-AS1 Gene

Additional Disease Information for ACBD3-AS1

No disorders were found for ACBD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACBD3-AS1 Gene

Publications for ACBD3-AS1 Gene

  1. Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes. (PMID: 28881755) Sun Y … Mao Y (Oncotarget 2017) 2 3 58

Products for ACBD3-AS1 Gene

Sources for ACBD3-AS1 Gene

Content
Loading form....