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Aliases for ACAP3 Gene

Aliases for ACAP3 Gene

  • ArfGAP With Coiled-Coil, Ankyrin Repeat And PH Domains 3 2 3 5
  • Centaurin-Beta-5 3 4
  • Cnt-B5 3 4
  • CENTB5 3 4
  • Arf-GAP With Coiled-Coil, ANK Repeat And PH Domain-Containing Protein 3 3
  • Centaurin, Beta 5 2
  • KIAA1716 4

External Ids for ACAP3 Gene

Previous HGNC Symbols for ACAP3 Gene

  • CENTB5

Previous GeneCards Identifiers for ACAP3 Gene

  • GC01M001220
  • GC01M000498

Summaries for ACAP3 Gene

GeneCards Summary for ACAP3 Gene

ACAP3 (ArfGAP With Coiled-Coil, Ankyrin Repeat And PH Domains 3) is a Protein Coding gene. Among its related pathways are Endocytosis. Gene Ontology (GO) annotations related to this gene include GTPase activator activity. An important paralog of this gene is ACAP2.

UniProtKB/Swiss-Prot for ACAP3 Gene

  • GTPase-activating protein for the ADP ribosylation factor family.

Additional gene information for ACAP3 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACAP3 Gene

Genomics for ACAP3 Gene

GeneHancer (GH) Regulatory Elements for ACAP3 Gene

Promoters and enhancers for ACAP3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J001303 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 +2.4 2404 6.9 PKNOX1 CLOCK MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 PUSL1 ACAP3 ATAD3B INTS11 ENSG00000240731 SLC35E2A CCNL2 LINC00115 FAAP20 LOC100288379
GH01J000998 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10 +309.1 309120 3.8 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ISG15 HES4 ATAD3B WASH7P INTS11 ENSG00000230092 ENSG00000240731 CDK11A CCNL2 LOC100288379
GH01J001373 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.2 -65.5 -65514 3.9 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 AURKAIP1 GC01M001374 ENSG00000230092 CDK11A ATAD3B LOC100288379 ENSG00000237094 CCNL2 SDF4 LOC100288069
GH01J001172 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 4.7 +135.7 135691 2 USF1 RFX1 CEBPB ARID4B BMI1 RAD21 RFX3 EGR1 POLR2A MYNN TTLL10 ANKRD65 ACAP3 TTLL10-AS1 GC01M001138
GH01J001356 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 2 -49.8 -49762 6.5 HDGF ARNT ARID4B YBX1 DMAP1 ZNF2 FOS SP5 NFYC ZHX2 MXRA8 SLC35E2A LOC100129381 ANKRD65 CCNL2 LOC100288379 SDF4 ENSG00000272455 INTS11 ENSG00000240731
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ACAP3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ACAP3 gene promoter:
  • NRSF form 2
  • NRSF form 1
  • E47
  • GATA-2
  • HTF
  • STAT5A
  • ZID
  • HEN1

Genomic Locations for ACAP3 Gene

Genomic Locations for ACAP3 Gene
17,234 bases
Minus strand
17,234 bases
Minus strand

Genomic View for ACAP3 Gene

Genes around ACAP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACAP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACAP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACAP3 Gene

Proteins for ACAP3 Gene

  • Protein details for ACAP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3
    Protein Accession:
    Secondary Accessions:
    • B1AMF5
    • Q5TA42
    • Q5TA43
    • Q86UT3
    • Q9BSR9
    • Q9C0E7

    Protein attributes for ACAP3 Gene

    834 amino acids
    Molecular mass:
    92495 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAB21807.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ACAP3 Gene


neXtProt entry for ACAP3 Gene

Post-translational modifications for ACAP3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ACAP3 Gene

Domains & Families for ACAP3 Gene

Suggested Antigen Peptide Sequences for ACAP3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ACAP3: view

No data available for UniProtKB/Swiss-Prot for ACAP3 Gene

Function for ACAP3 Gene

Molecular function for ACAP3 Gene

UniProtKB/Swiss-Prot Function:
GTPase-activating protein for the ADP ribosylation factor family.

Gene Ontology (GO) - Molecular Function for ACAP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IEA --
GO:0005515 protein binding IEA --
GO:0031267 small GTPase binding IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ACAP3: view
genes like me logo Genes that share phenotypes with ACAP3: view

Animal Models for ACAP3 Gene

MGI Knock Outs for ACAP3:
  • Acap3 Acap3<tm1a(EUCOMM)Hmgu>

Animal Model Products

miRNA for ACAP3 Gene

miRTarBase miRNAs that target ACAP3

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ACAP3 Gene

Localization for ACAP3 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ACAP3 gene
Compartment Confidence
nucleus 2
cytosol 2
golgi apparatus 2
plasma membrane 1
extracellular 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
  • Nucleoplasm (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ACAP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA --
GO:0005829 cytosol IBA --
GO:0016020 membrane IBA --
GO:0043231 intracellular membrane-bounded organelle IBA --
genes like me logo Genes that share ontologies with ACAP3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ACAP3 Gene

Pathways & Interactions for ACAP3 Gene

SuperPathways for ACAP3 Gene

SuperPathway Contained pathways
1 Endocytosis
genes like me logo Genes that share pathways with ACAP3: view

Pathways by source for ACAP3 Gene

1 KEGG pathway for ACAP3 Gene

Interacting Proteins for ACAP3 Gene

Gene Ontology (GO) - Biological Process for ACAP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016192 vesicle-mediated transport IBA --
GO:0032012 regulation of ARF protein signal transduction IBA --
GO:0043547 positive regulation of GTPase activity IEA --
genes like me logo Genes that share ontologies with ACAP3: view

No data available for SIGNOR curated interactions for ACAP3 Gene

Drugs & Compounds for ACAP3 Gene

No Compound Related Data Available

Transcripts for ACAP3 Gene

Unigene Clusters for ACAP3 Gene

ArfGAP with coiled-coil, ankyrin repeat and PH domains 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACAP3 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^
SP1: - - - - - - - -
SP3: - -
SP4: - - - - - - - - -
SP6: - - - - - - - -
SP7: - - - - -
SP8: - - - - - - - -
SP9: - - - - -
SP10: -
SP13: - -

ExUns: 15 ^ 16a · 16b ^ 17 ^ 18a · 18b ^ 19 ^ 20 ^ 21a · 21b ^ 22 ^ 23 ^ 24 ^ 25 ^ 26a · 26b ^ 27a · 27b · 27c · 27d
SP1: - -
SP2: -
SP3: - -
SP5: -
SP10: -
SP11: -

Relevant External Links for ACAP3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ACAP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ACAP3 Gene

mRNA differential expression in normal tissues according to GTEx for ACAP3 Gene

This gene is overexpressed in Brain - Cerebellum (x4.9) and Brain - Cerebellar Hemisphere (x4.3).

Protein differential expression in normal tissues from HIPED for ACAP3 Gene

This gene is overexpressed in Bone (57.3) and Pancreas (9.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ACAP3 Gene

Protein tissue co-expression partners for ACAP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of ACAP3 Gene:


SOURCE GeneReport for Unigene cluster for ACAP3 Gene:


Evidence on tissue expression from TISSUES for ACAP3 Gene

  • Nervous system(4.7)
genes like me logo Genes that share expression patterns with ACAP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACAP3 Gene

Orthologs for ACAP3 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ACAP3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ACAP3 34
  • 98 (a)
(Bos Taurus)
Mammalia ACAP3 34 33
  • 88.21 (n)
(Canis familiaris)
Mammalia ACAP3 34 33
  • 87.65 (n)
(Mus musculus)
Mammalia Acap3 16 34 33
  • 86.1 (n)
(Rattus norvegicus)
Mammalia Acap3 33
  • 84.52 (n)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 73 (a)
-- 34
  • 62 (a)
(Monodelphis domestica)
Mammalia ACAP3 34
  • 65 (a)
(Gallus gallus)
Aves ACAP3 34 33
  • 75.52 (n)
(Anolis carolinensis)
Reptilia -- 34
  • 81 (a)
-- 34
  • 67 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia acap3 33
  • 71.24 (n)
Str.17649 33
(Danio rerio)
Actinopterygii ACAP3 (1 of 3) 34
  • 79 (a)
acap3b 34 33
  • 71.04 (n)
acap3a 34
  • 69 (a)
Dr.17461 33
fruit fly
(Drosophila melanogaster)
Insecta cenB1A 34
  • 35 (a)
(Caenorhabditis elegans)
Secernentea cnt-1 34
  • 30 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes AGE1 34
  • 22 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AGD1 33
  • 42.84 (n)
(Oryza sativa)
Liliopsida Os09g0510700 33
  • 44.04 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 39 (a)
Species where no ortholog for ACAP3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ACAP3 Gene

Gene Tree for ACAP3 (if available)
Gene Tree for ACAP3 (if available)
Evolutionary constrained regions (ECRs) for ACAP3: view image

Paralogs for ACAP3 Gene

Paralogs for ACAP3 Gene

(7) SIMAP similar genes for ACAP3 Gene using alignment to 4 proteins:

  • F8W850_HUMAN
  • Q8N2W2_HUMAN
genes like me logo Genes that share paralogs with ACAP3: view

Variants for ACAP3 Gene

Sequence variations from dbSNP and Humsavar for ACAP3 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000013557 -- 1,307,957(-) G/C upstream_transcript_variant
rs1000022315 -- 1,296,519(-) T/G coding_sequence_variant, missense_variant
rs1000056560 -- 1,296,315(-) G/A intron_variant
rs1000090854 -- 1,301,823(-) C/T genic_upstream_transcript_variant, intron_variant
rs1000236370 -- 1,300,912(-) C/T 5_prime_UTR_variant, genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ACAP3 Gene

Variant ID Type Subtype PubMed ID
nsv997291 CNV gain 25217958
nsv950452 CNV deletion 24416366
nsv817616 CNV loss 17921354
nsv544971 CNV loss 21841781
nsv544969 CNV loss 21841781
nsv544965 CNV loss 21841781
nsv544947 CNV loss 21841781
nsv482937 CNV loss 15286789
nsv470680 CNV loss 18288195
nsv469848 CNV gain 16826518
nsv160950 CNV insertion 16902084
nsv1160788 CNV deletion 26073780
nsv1160772 CNV duplication 26073780
nsv1140724 CNV deletion 24896259
nsv1133121 CNV tandem duplication 24896259
nsv1119655 CNV deletion 24896259
nsv1118091 CNV deletion 24896259
nsv1074967 CNV deletion 25765185
nsv10161 CNV gain+loss 18304495
nsv1009541 CNV gain 25217958
nsv1000169 CNV gain 25217958
esv3890636 CNV loss 25118596
esv3050 CNV loss 18987735
esv2758912 CNV loss 17122850
dgv7n100 CNV loss 25217958
dgv6n100 CNV gain+loss 25217958
dgv2n67 CNV gain 20364138
dgv25n54 CNV loss 21841781

Variation tolerance for ACAP3 Gene

Residual Variation Intolerance Score: 14.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.50; 43.78% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ACAP3 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ACAP3 Gene

Disorders for ACAP3 Gene

Additional Disease Information for ACAP3

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for ACAP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACAP3 Gene

Publications for ACAP3 Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58
  2. [CENTB5 gene expression in human and mouse]. (PMID: 19548526) Shubina DM … Patkin EL (Molekuliarnaia biologiia 2009) 3 22 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11214970) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2000) 3 4 58
  5. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. (PMID: 26673895) Kırlı K … Görlich D (eLife 2015) 3 58

Products for ACAP3 Gene

Sources for ACAP3 Gene

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