Aliases for ACAP2-IT1 Gene

Subcategory (RNA class) for ACAP2-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ACAP2-IT1 Gene

  • ACAP2 Intronic Transcript 1 2 3 5
  • ACAP2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • ACAP2-IT1 2 168
  • HSALNG0031798 167
  • NONHSAG037054 92

External Ids for ACAP2-IT1 Gene

Previous GeneCards Identifiers for ACAP2-IT1 Gene

  • GC00U933750
  • GC03M195002

Summaries for ACAP2-IT1 Gene

GeneCards Summary for ACAP2-IT1 Gene

ACAP2-IT1 (ACAP2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ACAP2-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACAP2-IT1 Gene

Genomics for ACAP2-IT1 Gene

GeneHancer (GH) Regulatory Elements for ACAP2-IT1 Gene

Promoters and enhancers for ACAP2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J195282 Enhancer 0.2 Ensembl 500.7 -0.3 -321 0.5 ACAP2-IT1 XXYLT1 ACAP2 lnc-XXYLT1-3
GH03J196077 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -798.0 -797959 5.4 EP300 HNRNPK ZBTB40 ZNF217 TCF12 SIN3A MYC NRF1 USF1 POLR2G TFRC SDHAP1 MUC20-OT1 SDHAP2 WDR53 UBXN7-AS1 RNF168 MUC4 UBXN7 TM4SF19-AS1
GH03J194319 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 9.8 +960.7 960683 4.2 ZNF217 TCF12 NRF1 POLR2G KDM6A POLR2A TCF7 RFX1 REST HES1 LINC00887 ACAP2-IT1 HES1 lnc-HES1-9
GH03J194326 Enhancer 1.3 FANTOM5 Ensembl ENCODE 9.8 +955.1 955088 3.1 NRF1 BCLAF1 PHB2 ZNF639 ZBTB5 TSC22D4 TOE1 TRIM25 GATAD2B MCM3 HSALNG0031726 LSG1 ENSG00000272707 OPA1-AS1 XXYLT1 ACAP2-IT1 piR-30197-008
GH03J196055 Enhancer 1.2 Ensembl ENCODE 9.8 -773.1 -773097 1.4 EP300 ZNF217 NCOR1 ZNF639 ZIC2 KDM6A ZBTB10 TCF7 ZNF423 TARDBP lnc-TNK2-13 piR-56133-156 SENP5 ENSG00000237418 ACAP2-IT1 MUC20 SDHAP1 MUC20-OT1 SDHAP2 TFRC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACAP2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACAP2-IT1 Gene

Genomic Locations for ACAP2-IT1 Gene
chr3:195,280,723-195,282,742
(GRCh38/hg38)
Size:
2,020 bases
Orientation:
Minus strand
chr3:195,001,452-195,003,470
(GRCh37/hg19)
Size:
2,019 bases
Orientation:
Minus strand

Genomic View for ACAP2-IT1 Gene

Genes around ACAP2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACAP2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACAP2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ACAP2-IT1 Gene

Proteins for ACAP2-IT1 Gene

Post-translational modifications for ACAP2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACAP2-IT1 Gene

Domains & Families for ACAP2-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACAP2-IT1 Gene

Function for ACAP2-IT1 Gene

Phenotypes From GWAS Catalog for ACAP2-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACAP2-IT1 Gene

Localization for ACAP2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACAP2-IT1 Gene

Pathways & Interactions for ACAP2-IT1 Gene

PathCards logo

SuperPathways for ACAP2-IT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ACAP2-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACAP2-IT1 Gene

Drugs & Compounds for ACAP2-IT1 Gene

No Compound Related Data Available

Transcripts for ACAP2-IT1 Gene

mRNA/cDNA for ACAP2-IT1 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACAP2-IT1 Gene

No ASD Table

Relevant External Links for ACAP2-IT1 Gene

GeneLoc Exon Structure for
ACAP2-IT1

Expression for ACAP2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ACAP2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ACAP2-IT1 Gene

This gene is overexpressed in Brain - Cerebellum (x4.9).
genes like me logo Genes that share expression patterns with ACAP2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACAP2-IT1 Gene

Orthologs for ACAP2-IT1 Gene

Evolution for ACAP2-IT1 Gene

ENSEMBL:
Gene Tree for ACAP2-IT1 (if available)
TreeFam:
Gene Tree for ACAP2-IT1 (if available)

No data available for Orthologs for ACAP2-IT1 Gene

Paralogs for ACAP2-IT1 Gene

No data available for Paralogs for ACAP2-IT1 Gene

Variants for ACAP2-IT1 Gene

Additional Variant Information for ACAP2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACAP2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACAP2-IT1 Gene

Disorders for ACAP2-IT1 Gene

No disorders were found for ACAP2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ACAP2-IT1 Gene

Publications for ACAP2-IT1 Gene

No publications were found for ACAP2-IT1 Gene.

No data available for Mastermind for ACAP2-IT1 Gene

Products for ACAP2-IT1 Gene

Sources for ACAP2-IT1 Gene