Aliases for ACAP2-IT1 Gene

Subcategory (RNA class) for ACAP2-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ACAP2-IT1 Gene

  • ACAP2 Intronic Transcript 1 2 3 5
  • ACAP2-IT1 2 5 165
  • ACAP2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG037054.2 91
  • HSALNG0031798 164

External Ids for ACAP2-IT1 Gene

Previous GeneCards Identifiers for ACAP2-IT1 Gene

  • GC00U933750
  • GC03M195002

Summaries for ACAP2-IT1 Gene

GeneCards Summary for ACAP2-IT1 Gene

ACAP2-IT1 (ACAP2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ACAP2-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACAP2-IT1 Gene

Genomics for ACAP2-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ACAP2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J195282 Enhancer 0.2 Ensembl 600.7 -0.3 -321 0.5 ACAP2-IT1 XXYLT1 ACAP2 lnc-XXYLT1-3
GH03J196077 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -798.0 -797959 5.4 BRCA1 ARHGAP35 CEBPG SP1 HNRNPL CREB1 REST ZNF629 TFE3 LEF1 TFRC SDHAP1 MUC20-OT1 SDHAP2 UBXN7 SENP5 ENSG00000230732 UBXN7-AS1 MUC4 ENSG00000260261
GH03J194319 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 9.8 +960.7 960683 4.2 ARHGAP35 CREB1 GATAD2A ZBTB33 ZNF629 LEF1 SOX13 RCOR2 JUND PKNOX1 LINC00887 LSG1 ACAP2-IT1 HES1 lnc-HES1-9 CPN2
GH03J194326 Enhancer 1.3 FANTOM5 Ensembl ENCODE 9.8 +955.1 955088 3.1 ARHGAP35 HNRNPL CREB1 ZBTB33 IKZF1 TARDBP MTA2 PHF21A MTA1 ZNF24 HSALNG0031726 LSG1 ENSG00000272707 OPA1-AS1 XXYLT1 ACAP2-IT1 piR-30197-008 CPN2 HES1
GH03J196055 Enhancer 1.2 Ensembl ENCODE 9.8 -773.1 -773097 1.4 CEBPG CREB1 GATAD2A ATF7 ZNF629 TFE3 LEF1 SOX13 NFKBIZ ZNF692 lnc-TNK2-13 piR-56133-156 SENP5 ENSG00000237418 ACAP2-IT1 MUC20 SDHAP1 MUC20-OT1 SDHAP2 TFRC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACAP2-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ACAP2-IT1 Gene

Genomic Locations for ACAP2-IT1 Gene
chr3:195,280,723-195,282,742
(GRCh38/hg38)
Size:
2,020 bases
Orientation:
Minus strand
chr3:195,001,452-195,003,470
(GRCh37/hg19)
Size:
2,019 bases
Orientation:
Minus strand

Genomic View for ACAP2-IT1 Gene

Genes around ACAP2-IT1 on UCSC Golden Path with GeneCards custom track
ACAP2-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ACAP2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACAP2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ACAP2-IT1 Gene

Proteins for ACAP2-IT1 Gene

Post-translational modifications for ACAP2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACAP2-IT1 Gene

Domains & Families for ACAP2-IT1 Gene

Gene Families for ACAP2-IT1 Gene

genes like me logo Genes that share domains with ACAP2-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACAP2-IT1 Gene

Function for ACAP2-IT1 Gene

Phenotypes From GWAS Catalog for ACAP2-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACAP2-IT1 Gene

Localization for ACAP2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACAP2-IT1 Gene

Pathways & Interactions for ACAP2-IT1 Gene

PathCards logo

SuperPathways for ACAP2-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACAP2-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACAP2-IT1 Gene

Drugs & Compounds for ACAP2-IT1 Gene

No Compound Related Data Available

Transcripts for ACAP2-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ACAP2-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000057D897_9606 lncRNA 690 5

HGNC: 41426,

Ensembl: ENST00000419899 (view in UCSC) ,

LncBook: HSALNT0066941,

LNCipedia: ACAP2-IT1:1,

NONCODE: NONHSAT094150.2,

URS00009B7355_9606 lncRNA 690 2

LncBook: HSALNT0066942,

NONCODE: NONHSAT196832.1,

ACAP2-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACAP2-IT1 Gene

No ASD Table

Relevant External Links for ACAP2-IT1 Gene

GeneLoc Exon Structure for
ACAP2-IT1

No data available for mRNA/cDNA for ACAP2-IT1 Gene

Expression for ACAP2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ACAP2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ACAP2-IT1 Gene

This gene is overexpressed in Brain - Cerebellum (x4.9).
genes like me logo Genes that share expression patterns with ACAP2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACAP2-IT1 Gene

Orthologs for ACAP2-IT1 Gene

Evolution for ACAP2-IT1 Gene

ENSEMBL:
Gene Tree for ACAP2-IT1 (if available)
TreeFam:
Gene Tree for ACAP2-IT1 (if available)

No data available for Orthologs for ACAP2-IT1 Gene

Paralogs for ACAP2-IT1 Gene

No data available for Paralogs for ACAP2-IT1 Gene

Variants for ACAP2-IT1 Gene

Additional Variant Information for ACAP2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACAP2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACAP2-IT1 Gene

Disorders for ACAP2-IT1 Gene

No disorders were found for ACAP2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ACAP2-IT1 Gene

Publications for ACAP2-IT1 Gene

No publications were found for ACAP2-IT1 Gene.

No data available for Mastermind for ACAP2-IT1 Gene

Products for ACAP2-IT1 Gene

Sources for ACAP2-IT1 Gene