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Aliases for ACAP2-IT1 Gene

Subcategory (RNA class) for ACAP2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ACAP2-IT1 Gene

  • ACAP2 Intronic Transcript 1 2 3 5
  • ACAP2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ACAP2-IT1 Gene

Previous GeneCards Identifiers for ACAP2-IT1 Gene

  • GC00U933750
  • GC03M195002

Summaries for ACAP2-IT1 Gene

GeneCards Summary for ACAP2-IT1 Gene

ACAP2-IT1 (ACAP2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ACAP2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACAP2-IT1 Gene

Genomics for ACAP2-IT1 Gene

GeneHancer (GH) Regulatory Elements for ACAP2-IT1 Gene

Promoters and enhancers for ACAP2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I196078 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.8 -798.2 -798241 4.4 MLX DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 MEF2D GLIS1 RCOR2 TFRC SDHAP1 SDHAP2 LINC00969 UBXN7 ACAP2 ENSG00000230732 RNU6ATAC24P MUC4 SENP5
GH03I194319 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +960.4 960360 4.9 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A SLC30A9 CBX5 ZNF143 FOS LSG1 ACAP2-IT1 HES1 LINC00887 PIR54267 GC03P194342 GC03P194343 GC03P194344 GC03P194345 GC03P194346
GH03I194328 Enhancer 1.3 FANTOM5 Ensembl ENCODE 9.8 +954.6 954641 0.6 HDGF ARNT NSD2 ZNF2 ZNF280A ZNF207 FOS RUNX3 ZNF202 MEF2D LSG1 OPA1-AS1 LRRC15 ACAP2-IT1 GC03P194342 GC03P194343 GC03P194344 GC03P194345 GC03P194346 GC03P194347
GH03I196055 Enhancer 1 ENCODE 9.8 -773.1 -773098 1.4 PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B DMAP1 YY1 SLC30A9 POLR2B SENP5 ENSG00000237418 ACAP2-IT1 MUC20 SDHAP1 LINC00969 SDHAP2 GC03M196053 PIR52447 TFRC
GH03I194333 Enhancer 0.9 ENCODE 9.8 +955.0 954984 0 HDAC1 HDGF ZNF473 ARNT NSD2 NFXL1 ZNF2 ZNF280A EGR1 ZNF207 LSG1 OPA1-AS1 ACAP2-IT1 GC03P194342 GC03P194343 GC03P194344 GC03P194345 GC03P194346 GC03P194347 GC03P194348
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ACAP2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACAP2-IT1 Gene

Genomic Locations for ACAP2-IT1 Gene
chr3:195,280,723-195,282,741
(GRCh38/hg38)
Size:
2,019 bases
Orientation:
Minus strand
chr3:195,001,452-195,003,470
(GRCh37/hg19)

Genomic View for ACAP2-IT1 Gene

Genes around ACAP2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACAP2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACAP2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ACAP2-IT1 Gene

Proteins for ACAP2-IT1 Gene

Post-translational modifications for ACAP2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACAP2-IT1 Gene

Domains & Families for ACAP2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACAP2-IT1 Gene

Function for ACAP2-IT1 Gene

Phenotypes From GWAS Catalog for ACAP2-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACAP2-IT1 Gene

Localization for ACAP2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACAP2-IT1 Gene

Pathways & Interactions for ACAP2-IT1 Gene

SuperPathways for ACAP2-IT1 Gene

No Data Available

Interacting Proteins for ACAP2-IT1 Gene

Gene Ontology (GO) - Biological Process for ACAP2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACAP2-IT1 Gene

Drugs & Compounds for ACAP2-IT1 Gene

No Compound Related Data Available

Transcripts for ACAP2-IT1 Gene

mRNA/cDNA for ACAP2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACAP2-IT1 Gene

No ASD Table

Relevant External Links for ACAP2-IT1 Gene

GeneLoc Exon Structure for
ACAP2-IT1
ECgene alternative splicing isoforms for
ACAP2-IT1

Expression for ACAP2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ACAP2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ACAP2-IT1 Gene

This gene is overexpressed in Brain - Cerebellum (x4.9).
genes like me logo Genes that share expression patterns with ACAP2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACAP2-IT1 Gene

Orthologs for ACAP2-IT1 Gene

Evolution for ACAP2-IT1 Gene

ENSEMBL:
Gene Tree for ACAP2-IT1 (if available)
TreeFam:
Gene Tree for ACAP2-IT1 (if available)

No data available for Orthologs for ACAP2-IT1 Gene

Paralogs for ACAP2-IT1 Gene

No data available for Paralogs for ACAP2-IT1 Gene

Variants for ACAP2-IT1 Gene

Additional Variant Information for ACAP2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACAP2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACAP2-IT1 Gene

Disorders for ACAP2-IT1 Gene

No disorders were found for ACAP2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ACAP2-IT1 Gene

Publications for ACAP2-IT1 Gene

No publications were found for ACAP2-IT1 Gene.

Products for ACAP2-IT1 Gene

Sources for ACAP2-IT1 Gene

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