Aliases for AC004884 Gene

Subcategory (RNA class) for AC004884 Gene

rRNA

Number of RNA Genes sources:

1 / 17

Aliases for AC004884 Gene

No Aliases found

No data available for External Ids for AC004884 Gene

Summaries for AC004884 Gene

GeneCards Summary for AC004884 Gene

AC004884 is an RNA Gene, and is affiliated with the rRNA class.

Additional gene information for AC004884 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AC004884 Gene

Genomics for AC004884 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AC004884 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J105325 Enhancer 0.4 ENCODE dbSUPER 600.7 -0.4 -442 0.2 BHLHE40 AC004884 ENSG00000242154 SRPK2 lnc-SRPK2-5 KMT2E
GH07J105327 Enhancer 0.3 dbSUPER 600.7 +1.9 1903 1.5 ZBTB17 ZNF18 AC004884 SRPK2 RF00026-1029 RNU6-1322P lnc-SRPK2-5 KMT2E
GH07J105303 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -18.3 -18279 8.1 SP1 GATAD2A PRDM10 TFE3 SOX13 ZNF692 RCOR2 ZHX2 FOXA1 PATZ1 KMT2E RNU6-1322P ATXN7L1 LINC01004 SRPK2 ENSG00000237513 ENSG00000242154 AC004884 lnc-SRPK2-5
GH07J105319 Enhancer 0.7 FANTOM5 ENCODE 0.4 -6.1 -6088 0.3 POLR2A ZBTB40 ELF1 NBN TBP MTA2 ZNF687 SPI1 IKZF2 MLLT1 SRPK2 KMT2E AC004884 ENSG00000242154 lnc-SRPK2-5
GH07J105316 Enhancer 0.7 Ensembl dbSUPER 0.4 -9.1 -9050 0.8 ZNF7 FOXA1 HMBOX1 ESRRA GATA3 PRDM6 ZNF644 AC004884 ENSG00000242154 lnc-SRPK2-5 SRPK2 KMT2E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AC004884 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AC004884 Gene

Genomic Locations for AC004884 Gene
chr7:105,325,851-105,326,053
(GRCh38/hg38)
Size:
203 bases
Orientation:
Plus strand

Genomic View for AC004884 Gene

Genes around AC004884 on UCSC Golden Path with GeneCards custom track
AC004884 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

AC004884 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AC004884 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for AC004884 Gene

Proteins for AC004884 Gene

Post-translational modifications for AC004884 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AC004884 Gene

Domains & Families for AC004884 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AC004884 Gene

Function for AC004884 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AC004884 Gene

Localization for AC004884 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AC004884 Gene

Pathways & Interactions for AC004884 Gene

PathCards logo

SuperPathways for AC004884 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AC004884 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AC004884 Gene

Drugs & Compounds for AC004884 Gene

No Compound Related Data Available

Transcripts for AC004884 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AC004884 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000051299_9606 rRNA 203 1

ENA: AC004884.1:112157..112359:rRNA,

AC004884 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for AC004884 Gene

No ASD Table

Relevant External Links for AC004884 Gene

GeneLoc Exon Structure for
AC004884

No data available for mRNA/cDNA for AC004884 Gene

Expression for AC004884 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AC004884 Gene

Orthologs for AC004884 Gene

No data available for Orthologs and Evolution for AC004884 Gene

Paralogs for AC004884 Gene

No data available for Paralogs for AC004884 Gene

Variants for AC004884 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for AC004884 Gene

Disorders for AC004884 Gene

No disorders were found for AC004884 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AC004884 Gene

Publications for AC004884 Gene

No publications were found for AC004884 Gene.

No data available for Mastermind for AC004884 Gene

Products for AC004884 Gene

Sources for AC004884 Gene