Aliases for ABHD15-AS1 Gene

Subcategory (RNA class) for ABHD15-AS1 Gene

lncRNA

Aliases for ABHD15-AS1 Gene

  • ABHD15 Antisense RNA 1 2 3 5
  • Linc-TP53I13 2 3
  • Lnc-TP53I13 2 3
  • ABHD15-AS1 2 5

External Ids for ABHD15-AS1 Gene

Previous GeneCards Identifiers for ABHD15-AS1 Gene

  • GC00U934984

Summaries for ABHD15-AS1 Gene

GeneCards Summary for ABHD15-AS1 Gene

ABHD15-AS1 (ABHD15 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ABHD15-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABHD15-AS1 Gene

Genomics for ABHD15-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ABHD15-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J029560 Promoter/Enhancer 1 Ensembl ENCODE 600.7 +0.0 38 0.7 TCF12 IKZF2 EED RELB GATAD2B ZSCAN29 NBN HDGF IKZF1 POLR2A ABHD15-AS1 lnc-TAOK1-3 ABHD15 TP53I13 TAOK1
GH17J029561 Promoter/Enhancer 0.8 Ensembl ENCODE 600.7 +1.6 1560 1 SP1 RUNX3 ZNF316 SPI1 MAFK ABHD15-AS1 TP53I13 ABHD15 TAOK1
GH17J029565 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +7.1 7099 5.1 GATAD2A CTCF PRDM10 ZNF629 ZNF692 POLR2A ZNF7 TARDBP FOXA1 LARP7 TP53I13 ABHD15 ENSG00000264290 lnc-ABHD15-2 lnc-TAOK1-8 CORO6 ANKRD13B ABHD15-AS1
GH17J029586 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +30.1 30055 8.4 ARHGAP35 HNRNPL GATAD2A CTCF PRDM10 ZNF629 REST TFE3 SIX5 LEF1 ANKRD13B GIT1 ENSG00000264647 TP53I13 CORO6 SUPT6H ENSG00000264577 NUFIP2 GOSR1 LOC101927018
GH17J029557 Enhancer 1 Ensembl ENCODE 0.7 -3.1 -3146 2 ZNF512 LEF1 IKZF1 JUND PKNOX1 MTA1 DPF2 HDAC1 SOX6 GATAD2B lnc-TAOK1-3 TP53I13 ABHD15-AS1 TAOK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABHD15-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ABHD15-AS1 Gene

Genomic Locations for ABHD15-AS1 Gene
chr17:29,560,547-29,707,090
(GRCh38/hg38)
Size:
146,544 bases
Orientation:
Plus strand

Genomic View for ABHD15-AS1 Gene

Genes around ABHD15-AS1 on UCSC Golden Path with GeneCards custom track
ABHD15-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ABHD15-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABHD15-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ABHD15-AS1 Gene

Proteins for ABHD15-AS1 Gene

Post-translational modifications for ABHD15-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABHD15-AS1 Gene

Domains & Families for ABHD15-AS1 Gene

Gene Families for ABHD15-AS1 Gene

genes like me logo Genes that share domains with ABHD15-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ABHD15-AS1 Gene

Function for ABHD15-AS1 Gene

Phenotypes From GWAS Catalog for ABHD15-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABHD15-AS1 Gene

Localization for ABHD15-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABHD15-AS1 Gene

Pathways & Interactions for ABHD15-AS1 Gene

PathCards logo

SuperPathways for ABHD15-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ABHD15-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ABHD15-AS1 Gene

Drugs & Compounds for ABHD15-AS1 Gene

No Compound Related Data Available

Transcripts for ABHD15-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ABHD15-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000014D914_9606 lncRNA 187 2

HGNC: 49685,

Ensembl: ENST00000581474 (view in UCSC) ,

ABHD15-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ABHD15-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ABHD15-AS1 Gene

No ASD Table

Relevant External Links for ABHD15-AS1 Gene

GeneLoc Exon Structure for
ABHD15-AS1

Expression for ABHD15-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ABHD15-AS1 Gene

genes like me logo Genes that share expression patterns with ABHD15-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABHD15-AS1 Gene

Orthologs for ABHD15-AS1 Gene

Evolution for ABHD15-AS1 Gene

ENSEMBL:
Gene Tree for ABHD15-AS1 (if available)
TreeFam:
Gene Tree for ABHD15-AS1 (if available)

No data available for Orthologs for ABHD15-AS1 Gene

Paralogs for ABHD15-AS1 Gene

No data available for Paralogs for ABHD15-AS1 Gene

Variants for ABHD15-AS1 Gene

Additional Variant Information for ABHD15-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABHD15-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABHD15-AS1 Gene

Disorders for ABHD15-AS1 Gene

No disorders were found for ABHD15-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ABHD15-AS1 Gene

Publications for ABHD15-AS1 Gene

  1. Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases. (PMID: 24504737) Liu Y … Reilly MP (Arteriosclerosis, thrombosis, and vascular biology 2014) 2 3
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

Products for ABHD15-AS1 Gene

Sources for ABHD15-AS1 Gene