Aliases for ABHD11-AS1 Gene

Subcategory (RNA class) for ABHD11-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ABHD11-AS1 Gene

  • ABHD11 Antisense RNA 1 (Tail To Tail) 2 3 5
  • Williams Beuren Syndrome Chromosome Region 26 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 35 2 3
  • Williams Beuren Syndrome Chromosome Region 26 2
  • ABHD11 Antisense RNA 1 (Non-Protein Coding) 3
  • Non-Protein Coding RNA 35 2
  • HSALNG0058863 169
  • NONHSAG047941 94
  • Lnc-BUD23-1 170
  • NCRNA00035 3
  • ABHD11-AS1 2
  • LINC00035 3
  • WBSCR26 3

External Ids for ABHD11-AS1 Gene

Previous HGNC Symbols for ABHD11-AS1 Gene

  • WBSCR26
  • LINC00035

Previous GeneCards Identifiers for ABHD11-AS1 Gene

  • GC07P073151

Summaries for ABHD11-AS1 Gene

GeneCards Summary for ABHD11-AS1 Gene

ABHD11-AS1 (ABHD11 Antisense RNA 1 (Tail To Tail)) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ABHD11-AS1 include Bladder Cancer and Gastric Cancer.

Additional gene information for ABHD11-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABHD11-AS1 Gene

Genomics for ABHD11-AS1 Gene

GeneHancer (GH) Regulatory Elements for ABHD11-AS1 Gene

Promoters and enhancers for ABHD11-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J073734 Promoter/Enhancer 1.3 Ensembl ENCODE 750.6 +0.2 216 1.9 ZBTB40 CTCF RBPJ POLR2A CC2D1A ELF1 L3MBTL2 MAX RAD21 HDGF ABHD11-AS1 NONHSAG047942.2 ABHD11 METTL27 RF00017-6319
GH07J073736 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 27.7 +5.7 5687 7.8 SP1 ZBTB40 SREBF1 ZBTB6 SMARCE1 RBPJ POLR2A USF2 NR2F1 NR2F6 ABHD11 lnc-BUD23-2 lnc-BUD23-3 lnc-STX1A-1 STAG3L3 METTL27 POM121B POM121 BAZ1B NSUN5P2
GH07J073773 Enhancer 1.2 Ensembl ENCODE dbSUPER 38.2 +39.3 39263 2.6 SMARCE1 NFIB SP1 MAFK CBFA2T2 BACH1 SMARCA4 CDC5L TRIM24 MTA1 METTL27 ABHD11-AS1 STAG3L3 POM121 POM121B MIR590 NSUN5P2 BAZ1B NSUN5 CLDN3
GH07J073761 Enhancer 0.9 Ensembl ENCODE dbSUPER 39.7 +27.2 27173 0.8 GMEB1 IKZF1 GLIS2 ZNF512 SP2 ZBTB2 TRIM24 GATAD2B ZNF366 GLIS1 RF00017-6325 ABHD11-AS1 RF00017-6324 RF00017-6319
GH07J073766 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 26.5 +34.3 34292 4.9 ZNF121 MNT SP1 MYC POLR2A KLF14 IKZF1 GLIS2 CREB1 ZBTB8A CLDN3 METTL27 ABHD11-AS1 RF00017-6325 RF00017-6319
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABHD11-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ABHD11-AS1 Gene

Genomic Locations for ABHD11-AS1 Gene
chr7:73,735,038-73,736,158
(GRCh38/hg38)
Size:
1,121 bases
Orientation:
Plus strand
chr7:73,149,368-73,150,384
(GRCh37/hg19)
Size:
1,017 bases
Orientation:
Plus strand

Genomic View for ABHD11-AS1 Gene

Genes around ABHD11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABHD11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABHD11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABHD11-AS1 Gene

Proteins for ABHD11-AS1 Gene

Post-translational modifications for ABHD11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABHD11-AS1 Gene

Domains & Families for ABHD11-AS1 Gene

Gene Families for ABHD11-AS1 Gene

genes like me logo Genes that share domains with ABHD11-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ABHD11-AS1 Gene

Function for ABHD11-AS1 Gene

Phenotypes From GWAS Catalog for ABHD11-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABHD11-AS1 Gene

Localization for ABHD11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABHD11-AS1 Gene

Pathways & Interactions for ABHD11-AS1 Gene

PathCards logo

SuperPathways for ABHD11-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ABHD11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABHD11-AS1 Gene

Drugs & Compounds for ABHD11-AS1 Gene

No Compound Related Data Available

Transcripts for ABHD11-AS1 Gene

mRNA/cDNA for ABHD11-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(1) LncBook transcripts :
(4) LNCipedia transcripts :
(3) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABHD11-AS1 Gene

No ASD Table

Relevant External Links for ABHD11-AS1 Gene

GeneLoc Exon Structure for
ABHD11-AS1
ECgene alternative splicing isoforms for
ABHD11-AS1

Expression for ABHD11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABHD11-AS1 Gene

genes like me logo Genes that share expression patterns with ABHD11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABHD11-AS1 Gene

Orthologs for ABHD11-AS1 Gene

Evolution for ABHD11-AS1 Gene

ENSEMBL:
Gene Tree for ABHD11-AS1 (if available)
TreeFam:
Gene Tree for ABHD11-AS1 (if available)

No data available for Orthologs for ABHD11-AS1 Gene

Paralogs for ABHD11-AS1 Gene

No data available for Paralogs for ABHD11-AS1 Gene

Variants for ABHD11-AS1 Gene

Sequence variations from dbSNP and Humsavar for ABHD11-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000904320 -- 73,733,343(+) C/A upstream_transcript_variant
rs1001117218 -- 73,733,664(+) C/G/T upstream_transcript_variant
rs1001188510 -- 73,734,037(+) G/A/C upstream_transcript_variant
rs1001251575 -- 73,733,106(+) T/C upstream_transcript_variant
rs1001640022 -- 73,734,194(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ABHD11-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2761337 CNV loss 21179565
nsv469841 CNV loss 16826518
nsv831028 CNV loss 17160897

Additional Variant Information for ABHD11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABHD11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ABHD11-AS1 Gene

Disorders for ABHD11-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for ABHD11-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
bladder cancer
  • bladder cancer, somatic
gastric cancer
  • gastric cancer, somatic
williams-beuren syndrome
  • wbs
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ABHD11-AS1

genes like me logo Genes that share disorders with ABHD11-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ABHD11-AS1 Gene

Publications for ABHD11-AS1 Gene

  1. Increased lncRNA ABHD11-AS1 represses the malignant phenotypes of bladder cancer. (PMID: 28157695) Chen M … Cai Z (Oncotarget 2017) 2 3 56
  2. Striatal long noncoding RNA Abhd11os is neuroprotective against an N-terminal fragment of mutant huntingtin in vivo. (PMID: 25619660) Francelle L … Brouillet E (Neurobiology of aging 2015) 2 3 56
  3. Increased expression of long noncoding RNA ABHD11-AS1 in gastric cancer and its clinical significance. (PMID: 24984296) Lin X … Guo J (Medical oncology (Northwood, London, England) 2014) 2 3 56
  4. STAT3-induced upregulation of lncRNA ABHD11-AS1 promotes tumour progression in papillary thyroid carcinoma by regulating miR-1301-3p/STAT3 axis and PI3K/AKT signalling pathway. (PMID: 30657221) Wen J … Zhu Q (Cell proliferation 2019) 3 56
  5. Long non-coding RNA ABHD11-AS1 promotes colorectal cancer development through regulation of miR-133a/SOX4 axis. (PMID: 30429229) Lei X … Duan X (Bioscience reports 2018) 3 56

Products for ABHD11-AS1 Gene

Sources for ABHD11-AS1 Gene