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This gene encodes a member of the ATP-binding cassette (ABC) transporter superfamily. ATP-binding cassette proteins transport various molecules across extra- and intracellular membranes. The protein encoded by this gene displays antiviral effect against flaviviruses. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided b... See more...
Aliases for ABCF3 Gene
Aliases for ABCF3 Gene
External Ids for ABCF3 Gene
- HGNC: 72
- Entrez Gene: 55324
- Ensembl: ENSG00000161204
- UniProtKB: Q9NUQ8
Previous GeneCards Identifiers for ABCF3 Gene
- GC03U990120
- GC03P185305
- GC03P185224
- GC03P185386
- GC03P183903
- GC03P181310
Summaries for ABCF3 Gene
-
This gene encodes a member of the ATP-binding cassette (ABC) transporter superfamily. ATP-binding cassette proteins transport various molecules across extra- and intracellular membranes. The protein encoded by this gene displays antiviral effect against flaviviruses. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2017]
GeneCards Summary for ABCF3 Gene
ABCF3 (ATP Binding Cassette Subfamily F Member 3) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include ATPase activity. An important paralog of this gene is ABCF1.
UniProtKB/Swiss-Prot Summary for ABCF3 Gene
-
Displays an antiviral effect against flaviviruses such as west Nile virus (WNV) in the presence of OAS1B.
No data available for CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABCF3 Gene
Genomics for ABCF3 Gene
GeneHancer (GH) Regulatory Elements for ABCF3 Gene
Promoters and enhancers for ABCF3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ABCF3 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the ABCF3 gene promoter:
-
- E2F
- E2F-1
- E2F-2
- E2F-3a
- E2F-4
- E2F-5
- FAC1
- Lmo2
- SEF-1 (1)
- Sox9
Genomic Locations for ABCF3 Gene
Genomic Locations for ABCF3 Gene
- chr3:184,186,023-184,194,452
- (GRCh38/hg38)
- Size:
- 8,430 bases
- Orientation:
- Plus strand
- chr3:183,903,811-183,911,800
- (GRCh37/hg19)
- Size:
- 7,990 bases
- Orientation:
- Plus strand
Genomic View for ABCF3 Gene
Genes around ABCF3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 3q27.1 by HGNC
- 3q27.1 by Entrez Gene
- 3q27.1 by Ensembl
ABCF3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ABCF3 Gene
Proteins for ABCF3 Gene
-
Protein details for ABCF3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9NUQ8-ABCF3_HUMAN
- Recommended name:
- ATP-binding cassette sub-family F member 3
- Protein Accession:
- Q9NUQ8
- A8K241
- Q86UA2
- Q8NAN1
- Q96GS8
- Q9H7A8
Protein attributes for ABCF3 Gene
- Size:
- 709 amino acids
- Molecular mass:
- 79745 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=BAB14989.1; Type=Erroneous initiation; Evidence={ECO:0000305};
Protein Expression for ABCF3 Gene
Selected DME Specific Peptides for ABCF3 Gene
- Q9NUQ8:
-
- NGAGKST
- GENGAGKST
- LLLLDEP
Post-translational modifications for ABCF3 Gene
Other Protein References for ABCF3 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- G Biosciences Immunotag™ ABCF3 Antibody
- Atlas Antibodies Anti-ABCF3 Antibody
- Creative Diagnostics Anti-ABCF3 (aa 163-177) polyclonal antibody and Anti-ABCF3 (aa 98-296) polyclonal antibody
- Novus Biologicals Antibodies for ABCF3
- Invitrogen Antibodies for ABCF3 (AFLGC-ABCF3)
- antibodies-online: Show 13 available ABCF3 Antibodies ranked by validation data
-
Biorbyt antibodies for ABCF3
Protein Products
- Atlas Antibodies PrEST Antigen ABCF3
- Creative Biomart Recombinant Human ABCF3, His-tagged and Recombinant Human ABCF3 293 Cell Lysate
-
OriGene Purified Proteins for ABCF3
- Search Origene for MassSpec and Protein Over-expression Lysates for ABCF3
- Origene Custom Protein Services for ABCF3
Domains & Families for ABCF3 Gene
Gene Families for ABCF3 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for ABCF3 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for ABCF3 Gene
- GenScript: Design optimal peptide antigens:
-
- ATP-binding cassette sub-family F member 3 (ABCF3_HUMAN)
Graphical View of Domain Structure for InterPro Entry
Q9NUQ8UniProtKB/Swiss-Prot:
ABCF3_HUMAN :- Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily.
- Family:
-
- Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily.
Function for ABCF3 Gene
Molecular function for ABCF3 Gene
- UniProtKB/Swiss-Prot Function:
- Displays an antiviral effect against flaviviruses such as west Nile virus (WNV) in the presence of OAS1B.
- GENATLAS Biochemistry:
- ATP-binding cassette superfamily,subfamily F (GCN20),member 3
Enzyme Numbers (IUBMB) for ABCF3 Gene
Phenotypes From GWAS Catalog for ABCF3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 21516116 |
| GO:0005524 | ATP binding | IBA | 21873635 |
| GO:0016887 | ATPase activity | IEA | -- |
| GO:0045296 | cadherin binding | HDA | 25468996 |
Phenotypes for ABCF3 Gene
Animal Model Products
-
Taconic Biosciences Mouse Models for ABCF3
CRISPR Products
-
OriGene CRISPR knockouts for ABCF3
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ABCF3
- genomics-online: gRNA clones - Search results for available ABCF3 gene related products
- Applied Biological Materials (abm): CRISPR Clones for ABCF3 - Select products 50% OFF >
- * ABCF3 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * ABCF3 CRISPR applications: KO, Activation, Repression, and more - Browse All
-
Santa Cruz Biotechnology (SCBT) CRISPR for ABCF3
miRNA for ABCF3 Gene
- miRTarBase miRNAs that target ABCF3
-
- hsa-mir-4252 (MIRT091309)
- hsa-mir-155-3p (MIRT607597)
- hsa-mir-3941 (MIRT607598)
- hsa-mir-6845-3p (MIRT607599)
- hsa-mir-603 (MIRT607600)
- hsa-mir-362-3p (MIRT607601)
- hsa-mir-329-3p (MIRT607602)
- hsa-mir-8485 (MIRT607603)
- hsa-mir-6818-3p (MIRT608645)
- hsa-mir-548s (MIRT608646)
- hsa-mir-6864-3p (MIRT608647)
- hsa-mir-3672 (MIRT608648)
- hsa-mir-6888-3p (MIRT608649)
- hsa-mir-4684-5p (MIRT608650)
- hsa-mir-593-3p (MIRT608651)
- hsa-mir-6895-3p (MIRT608652)
- hsa-mir-3926 (MIRT608653)
- hsa-mir-769-5p (MIRT608654)
- hsa-mir-4786-5p (MIRT608655)
- hsa-mir-4738-3p (MIRT608656)
- hsa-mir-3120-5p (MIRT608657)
- hsa-mir-3190-5p (MIRT608658)
- hsa-mir-6849-3p (MIRT608659)
- hsa-mir-3664-5p (MIRT608660)
- hsa-mir-6510-3p (MIRT643618)
- hsa-mir-6873-3p (MIRT643619)
- hsa-mir-4522 (MIRT643620)
- hsa-mir-6817-3p (MIRT643621)
- hsa-mir-7110-3p (MIRT643622)
- hsa-mir-7703 (MIRT670080)
- hsa-mir-6720-5p (MIRT670081)
- hsa-mir-6512-3p (MIRT670082)
- hsa-mir-196a-3p (MIRT670083)
- hsa-mir-661 (MIRT670084)
- hsa-mir-6860 (MIRT670085)
- hsa-mir-612 (MIRT670086)
- hsa-mir-5189-5p (MIRT670087)
- hsa-mir-3187-5p (MIRT670088)
- hsa-mir-1285-3p (MIRT670089)
- hsa-mir-4793-3p (MIRT670090)
- hsa-mir-766-3p (MIRT670091)
- hsa-mir-1292-3p (MIRT670092)
- hsa-mir-939-3p (MIRT670093)
- hsa-mir-1273g-3p (MIRT670094)
- hsa-mir-3065-5p (MIRT670095)
- hsa-mir-508-5p (MIRT670096)
- hsa-mir-6827-3p (MIRT674177)
- hsa-mir-340-3p (MIRT674178)
- hsa-mir-1229-3p (MIRT761447)
- hsa-mir-1273e (MIRT761817)
- hsa-mir-1285-5p (MIRT762233)
- hsa-mir-3689d (MIRT767048)
- hsa-mir-377-5p (MIRT767348)
- hsa-mir-4537 (MIRT770115)
- hsa-mir-455-3p (MIRT770254)
- hsa-mir-4695-3p (MIRT771138)
- hsa-mir-6086 (MIRT775479)
- hsa-mir-6134 (MIRT775922)
- hsa-mir-6499-3p (MIRT776183)
- hsa-mir-6511a-3p (MIRT776751)
- hsa-mir-6511b-3p (MIRT776869)
- hsa-mir-6516-5p (MIRT777049)
- hsa-mir-665 (MIRT777520)
- hsa-mir-6784-3p (MIRT779084)
- hsa-mir-6840-3p (MIRT780101)
- hsa-mir-6851-5p (MIRT780386)
- hsa-mir-6862-3p (MIRT780594)
- hsa-mir-6880-5p (MIRT780811)
- hsa-mir-7847-3p (MIRT782129)
miRNA Products
Inhibitory RNA Products
- Origene sirna, shrna, and RNAi products in human, mouse, rat for ABCF3
- Browse OriGene Inhibitory RNA Products For ABCF3
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ABCF3
- genomics-online: shRNA clones - Search results for available ABCF3 gene related products
Clone Products
- Sino Biological Human cDNA Clone for ABCF3
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ABCF3
- genomics-online: cdna clones - Search results for available ABCF3 gene related products
- orf clones - Search results for available ABCF3 gene related products
- Applied Biological Materials (abm): Clones for ABCF3 - Select products 50% OFF >
- * ABCF3 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * ABCF3 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Cell Line Products
-
Horizon Cell Lines for ABCF3
No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ABCF3 Gene
Localization for ABCF3 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 3 |
| cytosol | 3 |
| endoplasmic reticulum | 1 |
- Cytosol (2)
- Nucleoli (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016020 | membrane | HDA | 19946888 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for ABCF3 Gene
Pathways & Interactions for ABCF3 Gene
Interacting Proteins for ABCF3 Gene
Selected Interacting proteins:
Q9NUQ8-ABCF3_HUMAN
ENSP00000411471
for ABCF3 Gene via
UniProtKB
MINT
STRING
IID
GPS-Prot Interaction Network for ABCF3
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0051607 | defense response to virus | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for ABCF3 Gene
Drugs & Compounds for ABCF3 Gene
No Compound Related Data Available
Drug Products
- Atlas Antibodies PrEST Antigen ABCF3
- Creative Biomart Recombinant Human ABCF3, His-tagged and Recombinant Human ABCF3 293 Cell Lysate
Transcripts for ABCF3 Gene
mRNA/cDNA for ABCF3 Gene
- (4) REFSEQ mRNAs :
- (17) Additional mRNA sequences :
- (296) Selected AceView cDNA sequences:
- (18) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000429586 2624 bps (ENST00000429586.6)
- ENST00000421340 690 bps (ENST00000421340.5)
- ENST00000485921 813 bps (ENST00000485921.5)
- ENST00000463685 661 bps (ENST00000463685.1)
- ENST00000478288 754 bps (ENST00000478288.5)
CRISPR Products
-
OriGene CRISPR knockouts for ABCF3
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ABCF3
- genomics-online: gRNA clones - Search results for available ABCF3 gene related products
- Applied Biological Materials (abm): CRISPR Clones for ABCF3 - Select products 50% OFF >
- * ABCF3 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * ABCF3 CRISPR applications: KO, Activation, Repression, and more - Browse All
-
Santa Cruz Biotechnology (SCBT) CRISPR for ABCF3
miRNA Products
Inhibitory RNA Products
- Origene sirna, shrna, and RNAi products in human, mouse, rat for ABCF3
- Browse OriGene Inhibitory RNA Products For ABCF3
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ABCF3
- genomics-online: shRNA clones - Search results for available ABCF3 gene related products
Clone Products
- Sino Biological Human cDNA Clone for ABCF3
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ABCF3
- genomics-online: cdna clones - Search results for available ABCF3 gene related products
- orf clones - Search results for available ABCF3 gene related products
- Applied Biological Materials (abm): Clones for ABCF3 - Select products 50% OFF >
- * ABCF3 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * ABCF3 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | · | 2c | ^ | 3a | · | 3b | ^ | 4a | · | 4b | · | 4c | · | 4d | ^ | 5 | ^ | 6a | · | 6b | · | 6c | · | 6d | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP3: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP4: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP5: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
| SP6: | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||
| SP7: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP8: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP9: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
| SP10: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP11: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP12: | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||
| SP13: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP14: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP15: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
| SP16: | - | - | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||
| SP17: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP18: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP19: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP20: |
| ExUns: | 14a | · | 14b | · | 14c | · | 14d | ^ | 15a | · | 15b | · | 15c | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20a | · | 20b | ^ | 21 | ^ | 22a | · | 22b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||||||||||||||
| SP2: | - | - | |||||||||||||||||||||||||||||
| SP3: | - | - | |||||||||||||||||||||||||||||
| SP4: | - | - | |||||||||||||||||||||||||||||
| SP5: | |||||||||||||||||||||||||||||||
| SP6: | |||||||||||||||||||||||||||||||
| SP7: | |||||||||||||||||||||||||||||||
| SP8: | |||||||||||||||||||||||||||||||
| SP9: | |||||||||||||||||||||||||||||||
| SP10: | |||||||||||||||||||||||||||||||
| SP11: | |||||||||||||||||||||||||||||||
| SP12: | |||||||||||||||||||||||||||||||
| SP13: | |||||||||||||||||||||||||||||||
| SP14: | |||||||||||||||||||||||||||||||
| SP15: | |||||||||||||||||||||||||||||||
| SP16: | |||||||||||||||||||||||||||||||
| SP17: | |||||||||||||||||||||||||||||||
| SP18: | |||||||||||||||||||||||||||||||
| SP19: | |||||||||||||||||||||||||||||||
| SP20: | - |
Expression for ABCF3 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Head Mesenchyme (Muscoskeletal System)
- Gut Tube (Gastrointestinal Tract)
-
Adrenal Gland (Endocrine System)
-
Limb (Muscoskeletal System)
This gene is overexpressed in Peripheral blood mononuclear cells (15.5).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ABCF3 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of ABCF3 Gene:
ABCF3SOURCE GeneReport for Unigene cluster for ABCF3 Gene:
Hs.361323Evidence on tissue expression from TISSUES for ABCF3 Gene
- Nervous system(4.9)
- Muscle(4.3)
- Skin(4.3)
Primer Products
-
OriGene qPCR primer pairs for ABCF3
-
OriGene qPCR primer pairs and template standards for ABCF3
- genomics-online: primer clones - Search results for available ABCF3 gene related products
Gene Expression Assay Products
No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCF3 Gene
Orthologs for ABCF3 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | ABCF3 33 32 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | ABCF3 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | ABCF3 33 32 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | ABCF3 33 32 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Abcf3 32 |
|
||
| mouse (Mus musculus) |
Mammalia | Abcf3 17 33 32 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | ABCF3 33 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | ABCF3 33 32 |
|
OneToOne | |
| lizard (Anolis carolinensis) |
Reptilia | ABCF3 33 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | LOC100145696 32 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | LOC398565 32 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | ABCF3 33 |
|
OneToOne | |
| LOC100331227 32 |
|
||||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP012005 32 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | CG9330 33 32 |
|
OneToOne | |
| worm (Caenorhabditis elegans) |
Secernentea | abcf-3 33 32 |
|
OneToOne | |
| A. gosspyii yeast (Ashbya gossypii) |
Saccharomycetes | AGOS_AEL032W 32 |
|
||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | GCN20 35 33 32 |
|
||
| K. lactis yeast (Kluyveromyces lactis) |
Saccharomycetes | KLLA0A10857g 32 |
|
||
| thale cress (Arabidopsis thaliana) |
eudicotyledons | GCN3 32 |
|
||
| soybean (Glycine max) |
eudicotyledons | Gma.4290 32 |
|
||
| corn (Zea mays) |
Liliopsida | Zm.4768 32 |
|
||
| rice (Oryza sativa) |
Liliopsida | Os.10758 32 |
|
||
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.1523 33 |
|
OneToOne | |
| Cin.11475 32 |
|
||||
| bread mold (Neurospora crassa) |
Ascomycetes | NCU04051 32 |
|
||
| fission yeast (Schizosaccharomyces pombe) |
Schizosaccharomycetes | SPBC29A3.09c 32 |
|
||
| sea squirt (Ciona intestinalis) |
Ascidiacea | Cin.11475 32 |
|
- Species where no ortholog for ABCF3 was found in the sources mined by GeneCards:
-
- Actinobacteria (Mycobacterium tuberculosis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Evolution for ABCF3 Gene
- ENSEMBL:
- Gene Tree for ABCF3 (if available)
- TreeFam:
- Gene Tree for ABCF3 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for ABCF3: view image
Paralogs for ABCF3 Gene
Variants for ABCF3 Gene
| SNP ID | Clin | Chr 03 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs143852274 | uncertain-significance, Malignant tumor of prostate | 184,189,867(+) | C/T | coding_sequence_variant, missense_variant | |
| rs1000284977 | -- | 184,184,665(+) | C/T | upstream_transcript_variant | |
| rs1000401479 | -- | 184,184,938(+) | A/G | upstream_transcript_variant | |
| rs1000628076 | -- | 184,190,250(+) | T/G | intron_variant | |
| rs1000855803 | -- | 184,192,210(+) | A/G | intron_variant |
Residual Variation Intolerance Score:
26.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
3.80;
58.27% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for ABCF3 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ABCF3
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ABCF3 Gene
Disorders for ABCF3 Gene
Additional Disease Information for ABCF3
No disorders were found for ABCF3 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCF3 Gene
Publications for ABCF3 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 56
- Characterization of the human ABC superfamily: isolation and mapping of 21 new genes using the expressed sequence tags database. (PMID: 8894702) Allikmets R … Dean M (Human molecular genetics 1996) 2 3 56
- Proteomic profiling of VCP substrates links VCP to K6-linked ubiquitylation and c-Myc function. (PMID: 29467282) Heidelberger JB … Beli P (EMBO reports 2018) 3 56
- Assembly of the WHIP-TRIM14-PPP6C Mitochondrial Complex Promotes RIG-I-Mediated Antiviral Signaling. (PMID: 29053956) Tan P … Wang RF (Molecular cell 2017) 3 56
ExternalLinks
Products for ABCF3 Gene
- Custom Antibody Services
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- Novus Biologicals Antibodies for ABCF3
- Novus Biologicals proteins and lysates for ABCF3
- Browse Antibodies
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- Taconic Biosciences Mouse Models for ABCF3
- Find your next knockout model in the Taconic Knockout Repository
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- Humanized Mice
- Invitrogen Antibodies for ABCF3 (AFLGC-ABCF3)
- antibodies-online: Show 13 available ABCF3 Antibodies ranked by validation data
- antibodies-online: Search results for available ABCF3 related products ranked by validation data
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- Horizon Cell Lines for ABCF3
- genomics-online: cdna clones - Search results for available ABCF3 gene related products
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- genomics-online: shRNA clones - Search results for available ABCF3 gene related products
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ABCF3
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- Biorbyt antibodies for ABCF3
Sources for ABCF3 Gene
- (1) GeneCards
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