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Aliases for ABCC6P1 Gene

Aliases for ABCC6P1 Gene

  • ATP Binding Cassette Subfamily C Member 6 Pseudogene 1 2 3 5
  • ATP-Binding Cassette, Sub-Family C, Member 6 Pseudogene 1 (Functional) 2 3
  • ATP Binding Cassette Subfamily C Member 6 Pseudogene 1 (Functional) 2 3
  • ATP-Binding Cassette, Sub-Family C, Member 6 Pseudogene 1 2

External Ids for ABCC6P1 Gene

Previous GeneCards Identifiers for ABCC6P1 Gene

  • GC16P018491
  • GC16M015856

Summaries for ABCC6P1 Gene

GeneCards Summary for ABCC6P1 Gene

ABCC6P1 (ATP Binding Cassette Subfamily C Member 6 Pseudogene 1) is a Pseudogene.

Additional gene information for ABCC6P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCC6P1 Gene

Genomics for ABCC6P1 Gene

GeneHancer (GH) Regulatory Elements for ABCC6P1 Gene

Promoters and enhancers for ABCC6P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J018571 Promoter 0.5 Ensembl 650.7 +0.2 239 0.8 ABCC6P1 ENSG00000260550
GH16J018595 Enhancer 0.6 Ensembl 0.3 +23.9 23939 0.2 SCRT1 ZNF687 NR2F1 BACH1 BMI1 MEF2B DPF2 SCRT2 IKZF1 NBN ABCC6P1 ENSG00000260550 PIR49143
GH16J018580 Enhancer 0.3 Ensembl 0.4 +9.4 9373 1.1 FOXA2 ABCC6P1 ENSG00000260550 PIR49143
GH16J018587 Enhancer 0.3 Ensembl 0.4 +17.0 17018 0.8 CTCF ABCC6P1 ENSG00000260550 PIR49143
GH16J018582 Enhancer 0.2 Ensembl 0.4 +11.1 11139 0.6 ENSG00000260550 ABCC6P1 PIR49143
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ABCC6P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ABCC6P1 gene promoter:
  • Elk-1
  • Lmo2
  • AML1a
  • GATA-1
  • Sp1
  • Pax-6
  • AREB6
  • MZF-1

Genomic Locations for ABCC6P1 Gene

Genomic Locations for ABCC6P1 Gene
27,167 bases
Plus strand
27,167 bases
Plus strand

Genomic View for ABCC6P1 Gene

Genes around ABCC6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCC6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCC6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC6P1 Gene

Proteins for ABCC6P1 Gene

Post-translational modifications for ABCC6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCC6P1 Gene

Domains & Families for ABCC6P1 Gene

Gene Families for ABCC6P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ABCC6P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCC6P1 Gene

Function for ABCC6P1 Gene

Phenotypes From GWAS Catalog for ABCC6P1 Gene

Phenotypes for ABCC6P1 Gene

genes like me logo Genes that share phenotypes with ABCC6P1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCC6P1 Gene

Localization for ABCC6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCC6P1 Gene

Pathways & Interactions for ABCC6P1 Gene

SuperPathways for ABCC6P1 Gene

No Data Available

Interacting Proteins for ABCC6P1 Gene

Gene Ontology (GO) - Biological Process for ABCC6P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ABCC6P1 Gene

Drugs & Compounds for ABCC6P1 Gene

No Compound Related Data Available

Transcripts for ABCC6P1 Gene

mRNA/cDNA for ABCC6P1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCC6P1 Gene

ATP-binding cassette, sub-family C, member 6 pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC6P1 Gene

No ASD Table

Relevant External Links for ABCC6P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ABCC6P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCC6P1 Gene

mRNA differential expression in normal tissues according to GTEx for ABCC6P1 Gene

This gene is overexpressed in Liver (x32.8) and Kidney - Cortex (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of ABCC6P1 Gene:


SOURCE GeneReport for Unigene cluster for ABCC6P1 Gene:

genes like me logo Genes that share expression patterns with ABCC6P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCC6P1 Gene

Orthologs for ABCC6P1 Gene

Evolution for ABCC6P1 Gene

Gene Tree for ABCC6P1 (if available)
Gene Tree for ABCC6P1 (if available)

No data available for Orthologs for ABCC6P1 Gene

Paralogs for ABCC6P1 Gene

No data available for Paralogs for ABCC6P1 Gene

Variants for ABCC6P1 Gene

Sequence variations from dbSNP and Humsavar for ABCC6P1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000310213 -- 18,598,224(+) G/A non_coding_transcript_variant
rs1000376073 -- 18,574,164(+) G/A intron_variant
rs1000381984 -- 18,585,694(+) G/C intron_variant
rs1000484701 -- 18,591,850(+) T/C intron_variant
rs1000813127 -- 18,592,992(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ABCC6P1 Gene

Variant ID Type Subtype PubMed ID
nsv984283 CNV duplication 23825009
nsv978101 CNV duplication 23825009
nsv9381 CNV gain 18304495
nsv833160 CNV gain 17160897
nsv7278 OTHER inversion 18451855
nsv514796 CNV gain 21397061
nsv442712 CNV gain+loss 18776908
nsv428320 CNV loss 18775914
nsv1160367 CNV duplication 26073780
nsv1160366 OTHER complex 26073780
nsv1160365 CNV duplication 26073780
nsv1049975 CNV loss 25217958
nsv1043239 CNV gain 25217958
esv3638112 CNV loss 21293372
esv3638111 CNV gain 21293372
esv3638110 CNV loss 21293372
esv3584704 CNV loss 24956385
esv3582069 CNV loss 25503493
esv34419 CNV gain 17911159
esv2762176 CNV gain+loss 21179565
esv2760417 CNV loss 21179565
esv2758634 CNV gain+loss 17122850
esv2751550 CNV gain 17911159
esv2421404 CNV deletion 20811451
dgv2786n100 CNV gain+loss 25217958
dgv2785n100 CNV gain 25217958
dgv2784n100 CNV gain 25217958
dgv2783n100 CNV gain 25217958
dgv2782n100 CNV loss 25217958
dgv2781n100 CNV gain+loss 25217958

Additional Variant Information for ABCC6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ABCC6P1 Gene

Disorders for ABCC6P1 Gene

Additional Disease Information for ABCC6P1

No disorders were found for ABCC6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCC6P1 Gene

Publications for ABCC6P1 Gene

  1. Copy number variations of the ATP-binding cassette transporter ABCC6 gene and its pseudogenes. (PMID: 22873774) Kringen MK … Piehler AP (BMC research notes 2012) 2 3 58
  2. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference. (PMID: 18405356) Piehler AP … Kaminski WE (BMC genomics 2008) 2 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ABCC6P1 Gene

Sources for ABCC6P1 Gene

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