Aliases for ABCC6P1 Gene

Aliases for ABCC6P1 Gene

  • ATP Binding Cassette Subfamily C Member 6 Pseudogene 1 2 3 5
  • ATP-Binding Cassette, Sub-Family C, Member 6 Pseudogene 1 (Functional) 2 3
  • ATP Binding Cassette Subfamily C Member 6 Pseudogene 1 (Functional) 2 3
  • ATP-Binding Cassette, Sub-Family C, Member 6 Pseudogene 1 2
  • ABCC6P1 5

External Ids for ABCC6P1 Gene

Previous GeneCards Identifiers for ABCC6P1 Gene

  • GC16P018491
  • GC16M015856
  • GC16P018583

Summaries for ABCC6P1 Gene

GeneCards Summary for ABCC6P1 Gene

ABCC6P1 (ATP Binding Cassette Subfamily C Member 6 Pseudogene 1) is a Pseudogene.

Additional gene information for ABCC6P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABCC6P1 Gene

Genomics for ABCC6P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ABCC6P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J018571 Promoter 0.4 Ensembl 600.7 +0.0 39 2 DACH1 ABCC6P1 ENSG00000260550 lnc-TMC7-6 NPIPA9 NOMO2 RPS15A
GH16J018580 Enhancer 0.5 Ensembl 12.5 +13.8 13839 10.8 FOXA2 BCOR SPI1 ZMYM3 RARA ABCC6P1 NPIPA9 HSALNG0109953 ENSG00000260550 lnc-TMC7-6 NOMO2 RPS15A
GH16J018591 Enhancer 0.7 Ensembl 0.4 +21.4 21439 2 CTCF ZNF692 BACH1 TCF12 IKZF2 DPF2 RELB ATF2 NBN IKZF1 HSALNG0109953 NPIPA9 piR-46002-225 ABCC6P1 NOMO2 RPS15A
GH16J018595 Enhancer 0.7 Ensembl 0.4 +23.9 23939 0.6 BACH1 TCF12 IKZF2 SCRT2 DPF2 RELB GATAD2B SCRT1 ARNT NBN HSALNG0109953 piR-46002-225 ABCC6P1 NOMO2 RPS15A
GH16J018574 Enhancer 0.3 Ensembl 0.7 +3.4 3438 0.8 ZBTB40 NPIPA9 ABCC6P1 ENSG00000260550 lnc-TMC7-6 NOMO2 HSALNG0109953 RPS15A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABCC6P1 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the ABCC6P1 gene promoter:
  • AML1a
  • AREB6
  • Elk-1
  • GATA-1
  • Lmo2
  • MZF-1
  • Pax-6
  • Sp1

Genomic Locations for ABCC6P1 Gene

Genomic Locations for ABCC6P1 Gene
chr16:18,571,162-18,598,328
(GRCh38/hg38)
Size:
27,167 bases
Orientation:
Plus strand
chr16:18,582,484-18,609,650
(GRCh37/hg19)
Size:
27,167 bases
Orientation:
Plus strand

Genomic View for ABCC6P1 Gene

Genes around ABCC6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCC6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCC6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC6P1 Gene

Proteins for ABCC6P1 Gene

Post-translational modifications for ABCC6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCC6P1 Gene

Domains & Families for ABCC6P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ABCC6P1 Gene

Function for ABCC6P1 Gene

Phenotypes From GWAS Catalog for ABCC6P1 Gene

Phenotypes for ABCC6P1 Gene

genes like me logo Genes that share phenotypes with ABCC6P1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCC6P1 Gene

Localization for ABCC6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCC6P1 Gene

Pathways & Interactions for ABCC6P1 Gene

PathCards logo

SuperPathways for ABCC6P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ABCC6P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ABCC6P1 Gene

Drugs & Compounds for ABCC6P1 Gene

No Compound Related Data Available

Transcripts for ABCC6P1 Gene

mRNA/cDNA for ABCC6P1 Gene

2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC6P1 Gene

No ASD Table

Relevant External Links for ABCC6P1 Gene

GeneLoc Exon Structure for
ABCC6P1

Expression for ABCC6P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ABCC6P1 Gene

mRNA differential expression in normal tissues according to GTEx for ABCC6P1 Gene

This gene is overexpressed in Liver (x32.8) and Kidney - Cortex (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ABCC6P1

SOURCE GeneReport for Unigene cluster for ABCC6P1 Gene:

Hs.13188
genes like me logo Genes that share expression patterns with ABCC6P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCC6P1 Gene

Orthologs for ABCC6P1 Gene

Evolution for ABCC6P1 Gene

ENSEMBL:
Gene Tree for ABCC6P1 (if available)
TreeFam:
Gene Tree for ABCC6P1 (if available)

No data available for Orthologs for ABCC6P1 Gene

Paralogs for ABCC6P1 Gene

No data available for Paralogs for ABCC6P1 Gene

Variants for ABCC6P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ABCC6P1 Gene

Variant ID Type Subtype PubMed ID
dgv2781n100 CNV gain+loss 25217958
dgv2782n100 CNV loss 25217958
dgv2783n100 CNV gain 25217958
dgv2784n100 CNV gain 25217958
dgv2785n100 CNV gain 25217958
dgv2786n100 CNV gain+loss 25217958
esv2421404 CNV deletion 20811451
esv2751550 CNV gain 17911159
esv2758634 CNV gain+loss 17122850
esv2760417 CNV loss 21179565
esv2762176 CNV gain+loss 21179565
esv34419 CNV gain 17911159
esv3582069 CNV loss 25503493
esv3584704 CNV loss 24956385
esv3638110 CNV loss 21293372
esv3638111 CNV gain 21293372
esv3638112 CNV loss 21293372
nsv1043239 CNV gain 25217958
nsv1049975 CNV loss 25217958
nsv1160365 CNV duplication 26073780
nsv1160366 OTHER complex 26073780
nsv1160367 CNV duplication 26073780
nsv428320 CNV loss 18775914
nsv442712 CNV gain+loss 18776908
nsv514796 CNV gain 21397061
nsv7278 OTHER inversion 18451855
nsv833160 CNV gain 17160897
nsv9381 CNV gain 18304495
nsv978101 CNV duplication 23825009
nsv984283 CNV duplication 23825009

Additional Variant Information for ABCC6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCC6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for ABCC6P1 Gene

Disorders for ABCC6P1 Gene

Additional Disease Information for ABCC6P1

No disorders were found for ABCC6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCC6P1 Gene

Publications for ABCC6P1 Gene

  1. Copy number variations of the ATP-binding cassette transporter ABCC6 gene and its pseudogenes. (PMID: 22873774) Kringen MK … Piehler AP (BMC research notes 2012) 2 3
  2. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference. (PMID: 18405356) Piehler AP … Kaminski WE (BMC genomics 2008) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ABCC6P1 Gene

Sources for ABCC6P1 Gene