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Aliases for ABCC5-AS1 Gene

Subcategory (RNA class) for ABCC5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ABCC5-AS1 Gene

  • ABCC5 Antisense RNA 1 2 3 5
  • ABCC5 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for ABCC5-AS1 Gene

Previous GeneCards Identifiers for ABCC5-AS1 Gene

  • GC00U933831
  • GC03P183725

Summaries for ABCC5-AS1 Gene

GeneCards Summary for ABCC5-AS1 Gene

ABCC5-AS1 (ABCC5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ABCC5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCC5-AS1 Gene

Genomics for ABCC5-AS1 Gene

GeneHancer (GH) Regulatory Elements for ABCC5-AS1 Gene

Promoters and enhancers for ABCC5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J184005 Enhancer 1.1 Ensembl ENCODE 650.7 +0.0 49 1.6 PKNOX1 ARNT SIN3A FOS ATF7 DEK JUNB ZNF592 ATF4 MAFF ABCC5-AS1 ABCC5 EEF1A1P8 HTR3D HTR3C PARL RPSAP31 EIF2B5 CAMK2N2 MAP6D1
GH03J184007 Enhancer 0.4 Ensembl 650.7 +1.4 1363 0.2 ZNF664 KLF1 ABCC5-AS1 ABCC5
GH03J184008 Enhancer 0.4 Ensembl 650.7 +1.8 1763 0.2 GATA3 MNT FOXA1 ABCC5-AS1 ABCC5 HTR3D HTR3C EIF2B5 CAMK2N2
GH03J184133 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.5 +128.9 128900 3.1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 ZNF610 GLIS1 EIF2B5 ENSG00000273181 ENSG00000272721 LOC105374249 DVL3 VWA5B2 RPS3P3 POLR2H AP2M1 ABCC5-AS1
GH03J183966 Enhancer 0.7 ENCODE 11.5 -39.8 -39810 0.2 MEIS2 PKNOX1 SIN3A E2F1 CTBP1 ZNF316 GATA3 TCF7L2 SMARCE1 ZNF687 ABCC5-AS1 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 PSMD2 CAMK2N2 PIR62380 ABCC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ABCC5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ABCC5-AS1 Gene

Genomic Locations for ABCC5-AS1 Gene
chr3:184,006,338-184,011,419
(GRCh38/hg38)
Size:
5,082 bases
Orientation:
Plus strand
chr3:183,724,126-183,729,207
(GRCh37/hg19)
Size:
5,082 bases
Orientation:
Plus strand

Genomic View for ABCC5-AS1 Gene

Genes around ABCC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC5-AS1 Gene

Proteins for ABCC5-AS1 Gene

Post-translational modifications for ABCC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCC5-AS1 Gene

Domains & Families for ABCC5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCC5-AS1 Gene

Function for ABCC5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCC5-AS1 Gene

Localization for ABCC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCC5-AS1 Gene

Pathways & Interactions for ABCC5-AS1 Gene

SuperPathways for ABCC5-AS1 Gene

No Data Available

Interacting Proteins for ABCC5-AS1 Gene

Gene Ontology (GO) - Biological Process for ABCC5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCC5-AS1 Gene

Drugs & Compounds for ABCC5-AS1 Gene

No Compound Related Data Available

Transcripts for ABCC5-AS1 Gene

mRNA/cDNA for ABCC5-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for ABCC5-AS1 Gene

ABCC5 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC5-AS1 Gene

No ASD Table

Relevant External Links for ABCC5-AS1 Gene

GeneLoc Exon Structure for
ABCC5-AS1
ECgene alternative splicing isoforms for
ABCC5-AS1

Expression for ABCC5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCC5-AS1 Gene

SOURCE GeneReport for Unigene cluster for ABCC5-AS1 Gene:

Hs.570696
genes like me logo Genes that share expression patterns with ABCC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCC5-AS1 Gene

Orthologs for ABCC5-AS1 Gene

Evolution for ABCC5-AS1 Gene

ENSEMBL:
Gene Tree for ABCC5-AS1 (if available)
TreeFam:
Gene Tree for ABCC5-AS1 (if available)

No data available for Orthologs for ABCC5-AS1 Gene

Paralogs for ABCC5-AS1 Gene

No data available for Paralogs for ABCC5-AS1 Gene

Variants for ABCC5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ABCC5-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000429695 -- 184,005,487(+) G/A upstream_transcript_variant
rs1000643465 -- 184,011,017(+) C/T intron_variant
rs1001164949 -- 184,007,938(+) G/A/C intron_variant
rs1001557317 -- 184,008,028(+) A/G intron_variant
rs1001836079 -- 184,007,191(+) T/G intron_variant

Additional Variant Information for ABCC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABCC5-AS1 Gene

Disorders for ABCC5-AS1 Gene

Additional Disease Information for ABCC5-AS1

No disorders were found for ABCC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCC5-AS1 Gene

Publications for ABCC5-AS1 Gene

No publications were found for ABCC5-AS1 Gene.

Products for ABCC5-AS1 Gene

Sources for ABCC5-AS1 Gene

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