Aliases for ABCC5-AS1 Gene

Subcategory (RNA class) for ABCC5-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ABCC5-AS1 Gene

  • ABCC5 Antisense RNA 1 2 3 5
  • ABCC5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ABCC5-AS1 2 170
  • NONHSAG036831 94

External Ids for ABCC5-AS1 Gene

Previous GeneCards Identifiers for ABCC5-AS1 Gene

  • GC00U933831
  • GC03P183725

Summaries for ABCC5-AS1 Gene

GeneCards Summary for ABCC5-AS1 Gene

ABCC5-AS1 (ABCC5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ABCC5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABCC5-AS1 Gene

Genomics for ABCC5-AS1 Gene

GeneHancer (GH) Regulatory Elements for ABCC5-AS1 Gene

Promoters and enhancers for ABCC5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J184005 Promoter/Enhancer 1.2 Ensembl ENCODE 750.6 +0.1 149 1.8 ZBTB40 GATA3 SMARCE1 ZNF362 L3MBTL2 MNT NFIB ZNF384 MAFK BACH1 ABCC5-AS1 ABCC5 EEF1A1P8 HTR3D HTR3C PARL RPSAP31 EIF2B5 CAMK2N2 MAP6D1
GH03J184008 Promoter 0.6 Ensembl 750.6 +1.9 1863 0.4 MNT GATA3 JUND FOXA1 ABCC5-AS1 ABCC5 HTR3D HTR3C EIF2B5 CAMK2N2 lnc-ABCC5-2
GH03J184133 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10.5 +129.2 129163 3.8 ZNF24 SP1 ZBTB40 SREBF1 SIX5 FOXA1 RBPJ POLR2A ATF1 CREB1 EIF2B5 ENSG00000273181 ENSG00000272721 LOC105374249 DVL3 ENSG00000228205 POLR2H PARL VWA5B2 ALG3
GH03J183966 Enhancer 0.8 Ensembl ENCODE 11.5 -39.6 -39643 1.2 SREBF1 TCF7L2 ZNF217 MNT MYC CREB1 CTBP1 ZNF316 PKNOX1 DPF2 ABCC5-AS1 HTR3C RPSAP31 PARL HTR3E-AS1 EIF2B5 PSMD2 ABCC5 CAMK2N2 RF00017-4190
GH03J184067 Enhancer 0.7 Ensembl 10.2 +61.8 61763 1 SMARCE1 L3MBTL2 TEAD4 ZFX CBFA2T2 SMARCA4 TRIM24 IKZF1 DPF2 HDAC1 HTR3E-AS1 CAMK2N2 ABCC5 ALG3 ECE2 EIF2B5 ABCC5-AS1 VWA5B2 MIR1224 HTR3C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABCC5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ABCC5-AS1 Gene

Genomic Locations for ABCC5-AS1 Gene
chr3:184,006,338-184,011,419
(GRCh38/hg38)
Size:
5,082 bases
Orientation:
Plus strand
chr3:183,724,126-183,729,207
(GRCh37/hg19)
Size:
5,082 bases
Orientation:
Plus strand

Genomic View for ABCC5-AS1 Gene

Genes around ABCC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC5-AS1 Gene

Proteins for ABCC5-AS1 Gene

Post-translational modifications for ABCC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCC5-AS1 Gene

Domains & Families for ABCC5-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ABCC5-AS1 Gene

Function for ABCC5-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCC5-AS1 Gene

Localization for ABCC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCC5-AS1 Gene

Pathways & Interactions for ABCC5-AS1 Gene

PathCards logo

SuperPathways for ABCC5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ABCC5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCC5-AS1 Gene

Drugs & Compounds for ABCC5-AS1 Gene

No Compound Related Data Available

Transcripts for ABCC5-AS1 Gene

mRNA/cDNA for ABCC5-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC5-AS1 Gene

No ASD Table

Relevant External Links for ABCC5-AS1 Gene

GeneLoc Exon Structure for
ABCC5-AS1
ECgene alternative splicing isoforms for
ABCC5-AS1

Expression for ABCC5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCC5-AS1 Gene

SOURCE GeneReport for Unigene cluster for ABCC5-AS1 Gene:

Hs.570696
genes like me logo Genes that share expression patterns with ABCC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCC5-AS1 Gene

Orthologs for ABCC5-AS1 Gene

Evolution for ABCC5-AS1 Gene

ENSEMBL:
Gene Tree for ABCC5-AS1 (if available)
TreeFam:
Gene Tree for ABCC5-AS1 (if available)

No data available for Orthologs for ABCC5-AS1 Gene

Paralogs for ABCC5-AS1 Gene

No data available for Paralogs for ABCC5-AS1 Gene

Variants for ABCC5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ABCC5-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000429695 -- 184,005,487(+) G/A upstream_transcript_variant
rs1000643465 -- 184,011,017(+) C/T intron_variant
rs1001164949 -- 184,007,938(+) G/A/C intron_variant
rs1001557317 -- 184,008,028(+) A/G intron_variant
rs1001836079 -- 184,007,191(+) T/G intron_variant

Additional Variant Information for ABCC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABCC5-AS1 Gene

Disorders for ABCC5-AS1 Gene

Additional Disease Information for ABCC5-AS1

No disorders were found for ABCC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCC5-AS1 Gene

Publications for ABCC5-AS1 Gene

No publications were found for ABCC5-AS1 Gene.

No data available for External Links for ABCC5-AS1 Gene

Products for ABCC5-AS1 Gene

Sources for ABCC5-AS1 Gene