Aliases for ABCC5-AS1 Gene

Subcategory (RNA class) for ABCC5-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ABCC5-AS1 Gene

  • ABCC5 Antisense RNA 1 2 3 5
  • ABCC5-AS1 2 5 165
  • ABCC5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG036831.2 91

External Ids for ABCC5-AS1 Gene

Previous GeneCards Identifiers for ABCC5-AS1 Gene

  • GC00U933831
  • GC03P183725

Summaries for ABCC5-AS1 Gene

GeneCards Summary for ABCC5-AS1 Gene

ABCC5-AS1 (ABCC5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ABCC5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABCC5-AS1 Gene

Genomics for ABCC5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ABCC5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J184005 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 600.7 +0.1 149 1.8 CREB1 IKZF1 BACH1 TARDBP ZHX2 JUND FOXA1 MTA2 RFX1 ZIC2 ABCC5-AS1 ABCC5 EEF1A1P8 HTR3D HTR3C PARL RPSAP31 EIF2B5 CAMK2N2 MAP6D1
GH03J184008 Promoter 0.6 Ensembl 600.7 +1.9 1863 0.4 FOXA1 ESR1 GATA3 JUND MNT ABCC5-AS1 ABCC5 HTR3D HTR3C EIF2B5 CAMK2N2 lnc-ABCC5-2 PARL
GH03J184133 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10.5 +129.2 129163 3.8 RNF2 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 REST TFE3 EIF2B5 ENSG00000273181 ENSG00000272721 LOC105374249 DVL3 VWA5B2 RPS3P3 POLR2H AP2M1 ABCC5-AS1
GH03J183966 Enhancer 0.8 Ensembl ENCODE 11.5 -39.6 -39643 1.2 CREB1 FOXA1 CTBP1 ZNF316 PKNOX1 ZNF217 MBD2 SIN3A GATA3 DPF2 ABCC5-AS1 HTR3C RPSAP31 PARL HTR3E-AS1 EIF2B5 PSMD2 ABCC5 CAMK2N2 RF00017-4192
GH03J184067 Enhancer 0.7 Ensembl 10.2 +61.8 61763 1 LEF1 IKZF1 DPF2 HDAC1 SOX6 FOXJ2 TCF12 EP300 MGA ZBTB11 HTR3E-AS1 CAMK2N2 ABCC5 EIF2B5 ALG3 ECE2 ABCC5-AS1 VWA5B2 MIR1224 HTR3C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABCC5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ABCC5-AS1 Gene

Genomic Locations for ABCC5-AS1 Gene
chr3:184,006,338-184,011,419
(GRCh38/hg38)
Size:
5,082 bases
Orientation:
Plus strand
chr3:183,724,126-183,729,207
(GRCh37/hg19)
Size:
5,082 bases
Orientation:
Plus strand

Genomic View for ABCC5-AS1 Gene

Genes around ABCC5-AS1 on UCSC Golden Path with GeneCards custom track
ABCC5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ABCC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC5-AS1 Gene

Proteins for ABCC5-AS1 Gene

Post-translational modifications for ABCC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCC5-AS1 Gene

Domains & Families for ABCC5-AS1 Gene

Gene Families for ABCC5-AS1 Gene

genes like me logo Genes that share domains with ABCC5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ABCC5-AS1 Gene

Function for ABCC5-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCC5-AS1 Gene

Localization for ABCC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCC5-AS1 Gene

Pathways & Interactions for ABCC5-AS1 Gene

PathCards logo

SuperPathways for ABCC5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ABCC5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ABCC5-AS1 Gene

Drugs & Compounds for ABCC5-AS1 Gene

No Compound Related Data Available

Transcripts for ABCC5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ABCC5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000221CD6_9606 lncRNA 469 5

HGNC: 40055,

RefSeq: NR_046570,

Ensembl: ENST00000422946 (view in UCSC) ,

LNCipedia: ABCC5-AS1:1,

NONCODE: NONHSAT093673.2,

ABCC5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ABCC5-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC5-AS1 Gene

No ASD Table

Relevant External Links for ABCC5-AS1 Gene

GeneLoc Exon Structure for
ABCC5-AS1

Expression for ABCC5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ABCC5-AS1 Gene

SOURCE GeneReport for Unigene cluster for ABCC5-AS1 Gene:

Hs.570696
genes like me logo Genes that share expression patterns with ABCC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCC5-AS1 Gene

Orthologs for ABCC5-AS1 Gene

Evolution for ABCC5-AS1 Gene

ENSEMBL:
Gene Tree for ABCC5-AS1 (if available)
TreeFam:
Gene Tree for ABCC5-AS1 (if available)

No data available for Orthologs for ABCC5-AS1 Gene

Paralogs for ABCC5-AS1 Gene

No data available for Paralogs for ABCC5-AS1 Gene

Variants for ABCC5-AS1 Gene

Additional dbSNP identifiers (rs#s) for ABCC5-AS1 Gene

Additional Variant Information for ABCC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABCC5-AS1 Gene

Disorders for ABCC5-AS1 Gene

No disorders were found for ABCC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCC5-AS1 Gene

Publications for ABCC5-AS1 Gene

No publications were found for ABCC5-AS1 Gene.

No data available for Mastermind for ABCC5-AS1 Gene

Products for ABCC5-AS1 Gene

Sources for ABCC5-AS1 Gene