Aliases for ABCA9-AS1 Gene

Subcategory (RNA class) for ABCA9-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ABCA9-AS1 Gene

  • ABCA9 Antisense RNA 1 2 3 5
  • ABCA9-AS1 2 5 165
  • ABCA9 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG022611.2 91
  • HSALNG0118391 164

External Ids for ABCA9-AS1 Gene

Previous GeneCards Identifiers for ABCA9-AS1 Gene

  • GC00U933962
  • GC17P067001
  • GC17P069004

Summaries for ABCA9-AS1 Gene

GeneCards Summary for ABCA9-AS1 Gene

ABCA9-AS1 (ABCA9 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ABCA9-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABCA9-AS1 Gene

Genomics for ABCA9-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ABCA9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J069004 Promoter 0.7 EPDnew Ensembl 600.2 +60.4 60369 1 piR-32461-074 piR-33432-232 piR-57176-279 piR-55361-258 ABCA9-AS1 ABCA10 RF00951-054 ABCA8 ABCA9
GH17J068944 Enhancer 0.2 Ensembl 600.7 +0.4 370 0.2 ABCA9-AS1 ABCA8 FAM20A
GH17J069030 Enhancer 0.6 Ensembl 12.8 +85.8 85770 0.6 MGA NFE2 ZNF316 E2F6 MAFG MAX EP300 TFDP1 MAFK STAT1 ABCA9-AS1 ABCA9 ABCA6 ABCA10 ABCA8 piR-38352-252 RF00951-054
GH17J069043 Enhancer 0.5 Ensembl 11.5 +99.0 98970 0.6 CEBPG CREB1 ATF7 CEBPB ATF2 ZNF610 STAT1 ABCA9-AS1 ABCA6 ABCA10 piR-38352-252 piR-60885-045 ABCA9 ABCA8
GH17J069057 Enhancer 0.3 Ensembl 11 +113.0 112970 0.2 ZNF644 ABCA9-AS1 ABCA6 ABCA10 piR-38352-252 piR-60885-045 ABCA9 ABCA8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABCA9-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ABCA9-AS1 Gene

Genomic Locations for ABCA9-AS1 Gene
chr17:68,944,531-69,042,784
(GRCh38/hg38)
Size:
98,254 bases
Orientation:
Plus strand
chr17:67,000,855-67,014,464
(GRCh37/hg19)
Size:
13,610 bases
Orientation:
Plus strand

Genomic View for ABCA9-AS1 Gene

Genes around ABCA9-AS1 on UCSC Golden Path with GeneCards custom track
ABCA9-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ABCA9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCA9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCA9-AS1 Gene

Proteins for ABCA9-AS1 Gene

Post-translational modifications for ABCA9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCA9-AS1 Gene

Domains & Families for ABCA9-AS1 Gene

Gene Families for ABCA9-AS1 Gene

genes like me logo Genes that share domains with ABCA9-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ABCA9-AS1 Gene

Function for ABCA9-AS1 Gene

Phenotypes From GWAS Catalog for ABCA9-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCA9-AS1 Gene

Localization for ABCA9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCA9-AS1 Gene

Pathways & Interactions for ABCA9-AS1 Gene

PathCards logo

SuperPathways for ABCA9-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ABCA9-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ABCA9-AS1 Gene

Drugs & Compounds for ABCA9-AS1 Gene

No Compound Related Data Available

Transcripts for ABCA9-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ABCA9-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000018F63F_9606 lncRNA 523 5

HGNC: 39983,

RefSeq: NR_126414,

Ensembl: ENST00000458677 (view in UCSC) ,

LncBook: HSALNT0244384,

NONCODE: NONHSAT055562.2,

URS00008118CE_9606 lncRNA 838 4

Ensembl: ENST00000629311 (view in UCSC) ,

LncBook: HSALNT0244390,

LNCipedia: ABCA9-AS1:7,

NONCODE: NONHSAT175540.1,

URS0000811F91_9606 lncRNA 656 3

Ensembl: ENST00000627453 (view in UCSC) ,

LNCipedia: ABCA9-AS1:6,

NONCODE: NONHSAT175539.1,

URS0000811896_9606 lncRNA 445 3

Ensembl: ENST00000630625 (view in UCSC) ,

LncBook: HSALNT0244381,

NONCODE: NONHSAT175535.1,

URS0000812045_9606 lncRNA 550 2

Ensembl: ENST00000630575 (view in UCSC) ,

NONCODE: NONHSAT175537.1,

ABCA9-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ABCA9-AS1 Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA9-AS1 Gene

No ASD Table

Relevant External Links for ABCA9-AS1 Gene

GeneLoc Exon Structure for
ABCA9-AS1

Expression for ABCA9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ABCA9-AS1 Gene

genes like me logo Genes that share expression patterns with ABCA9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCA9-AS1 Gene

Orthologs for ABCA9-AS1 Gene

Evolution for ABCA9-AS1 Gene

ENSEMBL:
Gene Tree for ABCA9-AS1 (if available)
TreeFam:
Gene Tree for ABCA9-AS1 (if available)

No data available for Orthologs for ABCA9-AS1 Gene

Paralogs for ABCA9-AS1 Gene

No data available for Paralogs for ABCA9-AS1 Gene

Variants for ABCA9-AS1 Gene

Additional dbSNP identifiers (rs#s) for ABCA9-AS1 Gene

Additional Variant Information for ABCA9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCA9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABCA9-AS1 Gene

Disorders for ABCA9-AS1 Gene

No disorders were found for ABCA9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCA9-AS1 Gene

Publications for ABCA9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for ABCA9-AS1 Gene

Sources for ABCA9-AS1 Gene