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Aliases for ABCA9-AS1 Gene

Subcategory (RNA class) for ABCA9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ABCA9-AS1 Gene

  • ABCA9 Antisense RNA 1 2 3 5
  • ABCA9 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for ABCA9-AS1 Gene

Previous GeneCards Identifiers for ABCA9-AS1 Gene

  • GC00U933962
  • GC17P067001

Summaries for ABCA9-AS1 Gene

GeneCards Summary for ABCA9-AS1 Gene

ABCA9-AS1 (ABCA9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ABCA9-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCA9-AS1 Gene

Genomics for ABCA9-AS1 Gene

GeneHancer (GH) Regulatory Elements for ABCA9-AS1 Gene

Promoters and enhancers for ABCA9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J068955 Promoter/Enhancer 1.2 EPDnew ENCODE 0.4 +10.9 10904 0.2 PKNOX1 ATF1 NFATC3 TAF1 ZBTB21 GTF2E2 RAD21 CHAMP1 YY1 POLR2B ABCA8 ABCA9-AS1 GC17M068986
GH17J068908 Enhancer 1.1 Ensembl ENCODE 0.3 -34.6 -34582 3.7 PKNOX1 FOXA2 ETS1 ZNF766 ATF7 FOS RXRA KAT8 PPARGC1A NFIL3 ABCA8 ABCA10 GC17M068868 ABCA9-AS1
GH17J068937 Enhancer 0.8 ENCODE 0.4 -6.2 -6165 0.9 ELF3 FOXA2 MLX RAD21 RARA YY1 EGR1 CREM THAP11 MIXL1 ABCA8 ABCA9 ABCA9-AS1 GC17M068868
GH17J068956 Enhancer 0.6 Ensembl 0.4 +10.6 10570 0.2 ATF1 SMAD5 RXRA GTF2E2 E2F5 CEBPB REST CEBPG YY1 IRF9 ABCA8 ABCA9-AS1
GH17J069013 Enhancer 1.1 Ensembl ENCODE 0.2 +69.1 69082 0.9 PKNOX1 ATF1 NCOA2 TCF12 ZNF766 ATF7 NCOA1 ZNF592 MEF2D SMARCA4 ABCA10 GC17M068986 GC17P069034 ABCA9 ABCA9-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABCA9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ABCA9-AS1 Gene

Genomic Locations for ABCA9-AS1 Gene
chr17:68,944,531-69,042,784
(GRCh38/hg38)
Size:
98,254 bases
Orientation:
Plus strand
chr17:67,000,855-67,014,464
(GRCh37/hg19)
Size:
13,610 bases
Orientation:
Plus strand

Genomic View for ABCA9-AS1 Gene

Genes around ABCA9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCA9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCA9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCA9-AS1 Gene

Proteins for ABCA9-AS1 Gene

Post-translational modifications for ABCA9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCA9-AS1 Gene

Domains & Families for ABCA9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCA9-AS1 Gene

Function for ABCA9-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCA9-AS1 Gene

Localization for ABCA9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCA9-AS1 Gene

Pathways & Interactions for ABCA9-AS1 Gene

SuperPathways for ABCA9-AS1 Gene

No Data Available

Interacting Proteins for ABCA9-AS1 Gene

Gene Ontology (GO) - Biological Process for ABCA9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCA9-AS1 Gene

Drugs & Compounds for ABCA9-AS1 Gene

No Compound Related Data Available

Transcripts for ABCA9-AS1 Gene

mRNA/cDNA for ABCA9-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(7) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA9-AS1 Gene

No ASD Table

Relevant External Links for ABCA9-AS1 Gene

GeneLoc Exon Structure for
ABCA9-AS1
ECgene alternative splicing isoforms for
ABCA9-AS1

Expression for ABCA9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCA9-AS1 Gene

genes like me logo Genes that share expression patterns with ABCA9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCA9-AS1 Gene

Orthologs for ABCA9-AS1 Gene

Evolution for ABCA9-AS1 Gene

ENSEMBL:
Gene Tree for ABCA9-AS1 (if available)
TreeFam:
Gene Tree for ABCA9-AS1 (if available)

No data available for Orthologs for ABCA9-AS1 Gene

Paralogs for ABCA9-AS1 Gene

No data available for Paralogs for ABCA9-AS1 Gene

Variants for ABCA9-AS1 Gene

Sequence variations from dbSNP and Humsavar for ABCA9-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000036002 -- 69,004,262(+) G/A upstream_transcript_variant
rs1000174919 -- 69,013,845(+) T/G intron_variant
rs1000240268 -- 69,015,649(+) G/C intron_variant
rs1000527925 -- 69,008,648(+) G/C intron_variant
rs1000529384 -- 69,008,349(+) C/A intron_variant

Additional Variant Information for ABCA9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCA9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABCA9-AS1 Gene

Disorders for ABCA9-AS1 Gene

Additional Disease Information for ABCA9-AS1

No disorders were found for ABCA9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCA9-AS1 Gene

Publications for ABCA9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for ABCA9-AS1 Gene

Sources for ABCA9-AS1 Gene

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