Aliases for ABCA17P Gene

Aliases for ABCA17P Gene

  • ATP Binding Cassette Subfamily A Member 17, Pseudogene 2 3 5
  • ATP-Binding Cassette, Sub-Family A (ABC1), Member 17, Pseudogene 2 3
  • ABCA17 3

External Ids for ABCA17P Gene

Previous GeneCards Identifiers for ABCA17P Gene

  • GC16U900657
  • GC16P002377
  • GC16P002316

Summaries for ABCA17P Gene

GeneCards Summary for ABCA17P Gene

ABCA17P (ATP Binding Cassette Subfamily A Member 17, Pseudogene) is a Pseudogene.

Additional gene information for ABCA17P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABCA17P Gene

Genomics for ABCA17P Gene

GeneHancer (GH) Regulatory Elements for ABCA17P Gene

Promoters and enhancers for ABCA17P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABCA17P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ABCA17P gene promoter:
  • aMEF-2
  • AML1a
  • C/EBPalpha
  • GATA-2
  • GATA-6
  • MEF-2A
  • Pax-4a
  • POU2F1a
  • ZIC2

Genomic Locations for ABCA17P Gene

Genomic Locations for ABCA17P Gene
chr16:2,339,150-2,426,699
(GRCh38/hg38)
Size:
87,550 bases
Orientation:
Plus strand
chr16:2,389,151-2,476,700
(GRCh37/hg19)
Size:
87,550 bases
Orientation:
Plus strand

Genomic View for ABCA17P Gene

Genes around ABCA17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCA17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCA17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCA17P Gene

Proteins for ABCA17P Gene

Post-translational modifications for ABCA17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCA17P Gene

Domains & Families for ABCA17P Gene

Gene Families for ABCA17P Gene

genes like me logo Genes that share domains with ABCA17P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ABCA17P Gene

Function for ABCA17P Gene

Phenotypes From GWAS Catalog for ABCA17P Gene

Animal Model Products

  • Taconic Biosciences Mouse Models for ABCA17P

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCA17P Gene

Localization for ABCA17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCA17P Gene

Pathways & Interactions for ABCA17P Gene

PathCards logo

SuperPathways for ABCA17P Gene

No Data Available

Gene Ontology (GO) - Biological Process for ABCA17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCA17P Gene

Drugs & Compounds for ABCA17P Gene

No Compound Related Data Available

Transcripts for ABCA17P Gene

mRNA/cDNA for ABCA17P Gene

(4) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA17P Gene

No ASD Table

Relevant External Links for ABCA17P Gene

GeneLoc Exon Structure for
ABCA17P
ECgene alternative splicing isoforms for
ABCA17P

Expression for ABCA17P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCA17P Gene

mRNA differential expression in normal tissues according to GTEx for ABCA17P Gene

This gene is overexpressed in Testis (x12.1).

NURSA nuclear receptor signaling pathways regulating expression of ABCA17P Gene:

ABCA17P

SOURCE GeneReport for Unigene cluster for ABCA17P Gene:

Hs.376281
genes like me logo Genes that share expression patterns with ABCA17P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCA17P Gene

Orthologs for ABCA17P Gene

Evolution for ABCA17P Gene

ENSEMBL:
Gene Tree for ABCA17P (if available)
TreeFam:
Gene Tree for ABCA17P (if available)

No data available for Orthologs for ABCA17P Gene

Paralogs for ABCA17P Gene

No data available for Paralogs for ABCA17P Gene

Variants for ABCA17P Gene

Sequence variations from dbSNP and Humsavar for ABCA17P Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs45451291 likely-benign, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,705(+) A/T upstream_transcript_variant
rs45456893 likely-benign, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,595(+) G/T upstream_transcript_variant
rs45501400 uncertain-significance, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,564(+) G/A/T upstream_transcript_variant
rs45583636 likely-benign, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,745(+) G/C upstream_transcript_variant
rs886051838 uncertain-significance, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,603(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ABCA17P Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV duplication 17116639
esv2673708 CNV deletion 23128226
esv2750384 CNV deletion 23290073
esv3308719 CNV mobile element insertion 20981092
esv3348224 CNV insertion 20981092
nsv1052260 CNV gain 25217958
nsv1123003 CNV deletion 24896259
nsv1131103 CNV deletion 24896259
nsv457353 CNV loss 19166990
nsv571201 CNV loss 21841781
nsv827512 CNV gain 20364138
nsv833121 CNV loss 17160897
nsv952903 CNV deletion 24416366

Additional Variant Information for ABCA17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCA17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ABCA17P Gene

Disorders for ABCA17P Gene

Additional Disease Information for ABCA17P

No disorders were found for ABCA17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCA17P Gene

Publications for ABCA17P Gene

  1. The human ortholog of the rodent testis-specific ABC transporter Abca17 is a ubiquitously expressed pseudogene (ABCA17P) and shares a common 5' end with ABCA3. (PMID: 16968533) Piehler AP … Kaminski WE (BMC molecular biology 2006) 2 3 56
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3 56
  3. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference. (PMID: 18405356) Piehler AP … Kaminski WE (BMC genomics 2008) 3 56
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for ABCA17P Gene

Sources for ABCA17P Gene