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Aliases for ABCA17P Gene

Aliases for ABCA17P Gene

  • ATP Binding Cassette Subfamily A Member 17, Pseudogene 2 3 5
  • ATP-Binding Cassette, Sub-Family A (ABC1), Member 17, Pseudogene 2 3
  • ABCA17 3

External Ids for ABCA17P Gene

Previous GeneCards Identifiers for ABCA17P Gene

  • GC16U900657
  • GC16P002377
  • GC16P002316

Summaries for ABCA17P Gene

GeneCards Summary for ABCA17P Gene

ABCA17P (ATP Binding Cassette Subfamily A Member 17, Pseudogene) is a Pseudogene.

Additional gene information for ABCA17P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCA17P Gene

Genomics for ABCA17P Gene

GeneHancer (GH) Regulatory Elements for ABCA17P Gene

Promoters and enhancers for ABCA17P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J002339 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 664.8 +1.1 1119 2.2 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ABCA17P ABCA3 PIR33563 CRAMP1 UNKL ZNF263 ENSG00000261123 TELO2 ZNF75A TSC2
GH16J002459 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.5 +121.0 121004 1.5 HDGF PKNOX1 ATF1 MLX ARID4B SIN3A ZNF2 ETS1 ZNF121 POLR2B LOC105371050 TEDC2 ENSG00000260874 SRRM2 ZNF263 ENSG00000255513 SNORA64 LOC105371055 TELO2 ENSG00000260954
GH16J002364 Enhancer 0.8 ENCODE 25.4 +26.5 26524 3.2 PKNOX1 STAT5A BMI1 ZNF366 IKZF2 RUNX3 ZNF398 ZNF217 NFIC SMARCA4 GC16M002363 ABCA17P ABCA3 CCNF NTN3 TBC1D24 SRRM2-AS1 GC16M002369
GH16J002506 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +169.6 169644 4.4 PKNOX1 SMAD1 RAD21 ZNF143 ATF7 IKZF2 RUNX3 EGR2 SMARCA5 CBFB TBC1D24 PDPK1 CEMP1 ABCA17P ABCA3 CCNF SRRM2 ATP6V0C ENSG00000260272 GC16M002495
GH16J003174 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.1 +836.3 836251 1.2 ATF1 ARNT ARID4B SIN3A ZNF2 YY1 GTF3C2 GLIS2 ZNF213 KLF7 PIR75204 TRK-CTT2-5 GC16P003598 E4F1 ZNF205 CREBBP ENSG00000261938 ZNF75A SRRM2 THOC6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ABCA17P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ABCA17P gene promoter:
  • C/EBPalpha
  • GATA-6
  • GATA-2
  • ZIC2
  • MEF-2A
  • aMEF-2
  • AML1a
  • Pax-4a
  • POU2F1a

Genomic Locations for ABCA17P Gene

Genomic Locations for ABCA17P Gene
chr16:2,339,150-2,426,699
(GRCh38/hg38)
Size:
87,550 bases
Orientation:
Plus strand
chr16:2,389,151-2,476,700
(GRCh37/hg19)
Size:
87,550 bases
Orientation:
Plus strand

Genomic View for ABCA17P Gene

Genes around ABCA17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCA17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCA17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCA17P Gene

Proteins for ABCA17P Gene

Post-translational modifications for ABCA17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCA17P Gene

Domains & Families for ABCA17P Gene

Gene Families for ABCA17P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ABCA17P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCA17P Gene

Function for ABCA17P Gene

Animal Model Products

  • Taconic Biosciences Mouse Models for ABCA17P

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCA17P Gene

Localization for ABCA17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCA17P Gene

Pathways & Interactions for ABCA17P Gene

SuperPathways for ABCA17P Gene

No Data Available

Interacting Proteins for ABCA17P Gene

Gene Ontology (GO) - Biological Process for ABCA17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCA17P Gene

Drugs & Compounds for ABCA17P Gene

No Compound Related Data Available

Transcripts for ABCA17P Gene

mRNA/cDNA for ABCA17P Gene

(6) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCA17P Gene

ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA17P Gene

No ASD Table

Relevant External Links for ABCA17P Gene

GeneLoc Exon Structure for
ABCA17P
ECgene alternative splicing isoforms for
ABCA17P

Expression for ABCA17P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCA17P Gene

mRNA differential expression in normal tissues according to GTEx for ABCA17P Gene

This gene is overexpressed in Testis (x12.1).

NURSA nuclear receptor signaling pathways regulating expression of ABCA17P Gene:

ABCA17P

SOURCE GeneReport for Unigene cluster for ABCA17P Gene:

Hs.376281
genes like me logo Genes that share expression patterns with ABCA17P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCA17P Gene

Orthologs for ABCA17P Gene

Evolution for ABCA17P Gene

ENSEMBL:
Gene Tree for ABCA17P (if available)
TreeFam:
Gene Tree for ABCA17P (if available)

No data available for Orthologs for ABCA17P Gene

Paralogs for ABCA17P Gene

No data available for Paralogs for ABCA17P Gene

Variants for ABCA17P Gene

Sequence variations from dbSNP and Humsavar for ABCA17P Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs45451291 likely-benign, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,705(+) A/T upstream_transcript_variant
rs45456893 likely-benign, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,595(+) G/T upstream_transcript_variant
rs45501400 uncertain-significance, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,564(+) G/T upstream_transcript_variant
rs45583636 likely-benign, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,745(+) G/C upstream_transcript_variant
rs886051838 uncertain-significance, Pulmonary Surfactant Metabolism Dysfunction, Recessive 2,340,603(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ABCA17P Gene

Variant ID Type Subtype PubMed ID
nsv952903 CNV deletion 24416366
nsv833121 CNV loss 17160897
nsv827512 CNV gain 20364138
nsv571201 CNV loss 21841781
nsv457353 CNV loss 19166990
nsv1131103 CNV deletion 24896259
nsv1123003 CNV deletion 24896259
nsv1052260 CNV gain 25217958
esv3348224 CNV insertion 20981092
esv3308719 CNV mobile element insertion 20981092
esv2750384 CNV deletion 23290073
esv2673708 CNV deletion 23128226
esv2422427 CNV duplication 17116639

Additional Variant Information for ABCA17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCA17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ABCA17P Gene

Disorders for ABCA17P Gene

Additional Disease Information for ABCA17P

No disorders were found for ABCA17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCA17P Gene

Publications for ABCA17P Gene

  1. The human ortholog of the rodent testis-specific ABC transporter Abca17 is a ubiquitously expressed pseudogene (ABCA17P) and shares a common 5' end with ABCA3. (PMID: 16968533) Piehler AP … Kaminski WE (BMC molecular biology 2006) 2 3 58
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3 58
  3. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference. (PMID: 18405356) Piehler AP … Kaminski WE (BMC genomics 2008) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for ABCA17P Gene

Sources for ABCA17P Gene

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