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Aliases for ABCA11P Gene
Aliases for ABCA11P Gene
External Ids for ABCA11P Gene
- HGNC: 31
- Entrez Gene: 79963
- Ensembl: ENSG00000251595
- UniProtKB: Q4W5N1
Previous HGNC Symbols for ABCA11P Gene
- ABCA11
Previous GeneCards Identifiers for ABCA11P Gene
- GC04U900972
- GC04M000412
- GC04M000420
- GC04M000426
Summaries for ABCA11P Gene
GeneCards Summary for ABCA11P Gene
ABCA11P (ATP Binding Cassette Subfamily A Member 11, Pseudogene) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include transporter activity and ATPase activity.
Additional gene information for ABCA11P Gene
- HGNC(31)
- Entrez Gene(79963)
- Ensembl(ENSG00000251595)
- UniProtKB(Q4W5N1)
- Open Targets Platform(ENSG00000251595)
- Search for ABCA11P at DataMed
- Search for ABCA11P at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABCA11P Gene
Genomics for ABCA11P Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for ABCA11P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ABCA11P on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the ABCA11P gene promoter:
-
- Ik-1
Genomic Locations for ABCA11P Gene
Genomic Locations for ABCA11P Gene
- chr4:425,435-474,209
- (GRCh38/hg38)
- Size:
- 48,775 bases
- Orientation:
- Minus strand
- chr4:419,224-467,998
- (GRCh37/hg19)
- Size:
- 48,775 bases
- Orientation:
- Minus strand
Genomic View for ABCA11P Gene
Genes around ABCA11P on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4p16.3 by HGNC
- 4p16.3 by Entrez Gene
- 4p16.3 by Ensembl
ABCA11P Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ABCA11P Gene
Proteins for ABCA11P Gene
-
Protein details for ABCA11P Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q4W5N1-ABCAB_HUMAN
- Recommended name:
- Putative ATP-binding cassette sub-family A member 11
- Protein Accession:
- Q4W5N1
- Q9H7T1
Protein attributes for ABCA11P Gene
- Size:
- 156 amino acids
- Molecular mass:
- 17479 Da
- Quaternary structure:
- No Data Available
Protein Expression for ABCA11P Gene
Post-translational modifications for ABCA11P Gene
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ABCA11P
- Origene Custom Protein Services for ABCA11P
No data available for DME Specific Peptides for ABCA11P Gene
Domains & Families for ABCA11P Gene
Gene Families for ABCA11P Gene
Protein Domains for ABCA11P Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for ABCA11P Gene
- GenScript: Design optimal peptide antigens:
-
- Putative ATP-binding cassette sub-family A member 11 (ABCAB_HUMAN)
Graphical View of Domain Structure for InterPro Entry
Q4W5N1- Family:
-
- Belongs to the ABC transporter superfamily. ABCA family.
Function for ABCA11P Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005524 | ATP binding | IEA | -- |
| GO:0016887 | ATPase activity | IEA | -- |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | IEA | -- |
Phenotypes for ABCA11P Gene
- GenomeRNAi human phenotypes for ABCA11P:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for ABCA11P - Select products 50% OFF >
- * ABCA11P CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for ABCA11P
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for ABCA11P
- Browse OriGene Inhibitory RNA Products For ABCA11P
Clone Products
- Applied Biological Materials (abm): Clones for ABCA11P - Select products 50% OFF >
- * ABCA11P as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCA11P Gene
Localization for ABCA11P Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016021 | integral component of membrane | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for ABCA11P Gene
Pathways & Interactions for ABCA11P Gene
Interacting Proteins for ABCA11P Gene
| Symbol | External ID(s) | Details |
|---|---|---|
| HSCB |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0055085 | transmembrane transport | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for ABCA11P Gene
Transcripts for ABCA11P Gene
mRNA/cDNA for ABCA11P Gene
- 1 REFSEQ mRNAs :
- 14 NCBI additional mRNA sequence :
- 4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000451020 1815 nts (view in UCSC)
- ENST00000504019 2110 nts (view in UCSC)
- ENST00000514396 1423 nts (view in UCSC)
- ENST00000507854 1503 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for ABCA11P - Select products 50% OFF >
- * ABCA11P CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for ABCA11P
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for ABCA11P
- Browse OriGene Inhibitory RNA Products For ABCA11P
Clone Products
- Applied Biological Materials (abm): Clones for ABCA11P - Select products 50% OFF >
- * ABCA11P as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for ABCA11P Gene
- GeneLoc Exon Structure for
- ABCA11P
Expression for ABCA11P Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ABCA11P Gene
- Elite partner
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ABCA11P
SOURCE GeneReport for Unigene cluster for ABCA11P Gene:
Hs.745030Primer Products
-
OriGene qPCR primer pairs for ABCA11P
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCA11P Gene
Orthologs for ABCA11P Gene
No data available for Orthologs for ABCA11P Gene
Paralogs for ABCA11P Gene
(5) SIMAP similar genes for ABCA11P Gene using alignment to 1 proteins:
- ABCAB_HUMAN
No data available for Paralogs for ABCA11P Gene
Variants for ABCA11P Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv5077n100 | CNV | loss | 25217958 |
| dgv5078n100 | CNV | loss | 25217958 |
| dgv8875n54 | CNV | loss | 21841781 |
| esv2763816 | CNV | gain+loss | 21179565 |
| esv3569239 | CNV | loss | 25503493 |
| esv3599370 | CNV | loss | 21293372 |
| esv3599371 | CNV | loss | 21293372 |
| esv3599372 | CNV | loss | 21293372 |
| esv3893859 | CNV | gain | 25118596 |
| esv3893862 | CNV | gain | 25118596 |
| esv4769 | OTHER | complex | 18987735 |
| nsv1001899 | CNV | loss | 25217958 |
| nsv1006781 | CNV | gain | 25217958 |
| nsv1009336 | CNV | gain | 25217958 |
| nsv1012061 | CNV | loss | 25217958 |
| nsv1114478 | CNV | deletion | 24896259 |
| nsv461144 | CNV | loss | 19166990 |
| nsv461145 | CNV | gain | 19166990 |
| nsv469736 | CNV | loss | 16826518 |
| nsv517948 | CNV | loss | 19592680 |
| nsv521895 | CNV | loss | 19592680 |
| nsv593198 | CNV | loss | 21841781 |
| nsv593199 | CNV | loss | 21841781 |
| nsv593202 | CNV | gain | 21841781 |
| nsv593203 | CNV | loss | 21841781 |
| nsv964023 | CNV | duplication | 23825009 |
Additional Variant Information for ABCA11P Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ABCA11P
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for ABCA11P Gene
Disorders for ABCA11P Gene
Additional Disease Information for ABCA11P
No disorders were found for ABCA11P Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCA11P Gene
Publications for ABCA11P Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
- Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 4
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
ExternalLinks
Products for ABCA11P Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ABCA11P
- Origene Custom Protein Services for ABCA11P
- Origene shrna and RNAi products in human, mouse, rat for ABCA11P
- Browse OriGene Inhibitory RNA Products For ABCA11P
- OriGene qPCR primer pairs for ABCA11P
- Browse CRISPR knockouts for ABCA11P
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For ABCA11P
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- VectorBuilder Custom and pre-made DNA vectors for ABCA11P (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for ABCA11P (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for ABCA11P (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for ABCA11P CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for ABCA11P
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for ABCA11P
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for ABCA11P
- Search GeneCopoeia for miRNA 3'UTR Target clone products for ABCA11P
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for ABCA11P
Sources for ABCA11P Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB