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ABCA11P Gene(Pseudogene)

ATP Binding Cassette Subfamily A Member 11, Pseudogene

GCID:
GC04M000428
GIFtS:
24
Genes Participants
UDN Logo

Aliases for ABCA11P Gene

Aliases for ABCA11P Gene

  • ATP Binding Cassette Subfamily A Member 11, Pseudogene 2 3 5
  • ABCA11 3 4
  • ATP-Binding Cassette, Sub-Family A (ABC1), Member 11 (Pseudogene) 3
  • ATP-Binding Cassette, Sub-Family A (ABC1), Member 11, Pseudogene 2
  • EST1133530 3

External Ids for ABCA11P Gene

Previous HGNC Symbols for ABCA11P Gene

  • ABCA11

Previous GeneCards Identifiers for ABCA11P Gene

  • GC04U900972
  • GC04M000412
  • GC04M000420
  • GC04M000426

Summaries for ABCA11P Gene

GeneCards Summary for ABCA11P Gene

ABCA11P (ATP Binding Cassette Subfamily A Member 11, Pseudogene) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include transporter activity and ATPase activity.

Additional gene information for ABCA11P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCA11P Gene

Genomics for ABCA11P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ABCA11P Gene

Promoters and enhancers for ABCA11P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J000472 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 +0.4 415 2.1 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B ZNF721 ABCA11P LOC100533735 PIGG CRIPAK PCGF3 GAK MAEA ENSG00000272588 ZNF718
GH04J001267 Enhancer 0.9 Ensembl ENCODE 14 -793.6 -793627 1.6 CTCF PKNOX1 FOXA2 RB1 ZNF2 KLF5 RAD21 ZNF207 ZNF143 ATF7 GC04P001268 UVSSA MAEA CRIPAK ZNF721 ABCA11P ZNF732 ENSG00000251188 ZNF141 SPON2
GH04J001304 Enhancer 0.7 ENCODE 4.7 -831.7 -831680 1.9 SOX13 FOXA2 SAP130 ARID4B ZNF644 RAD21 TEAD3 ZNF316 GATAD1 POLR2A MAEA UVSSA CTBP1-DT ABCA11P GC04M001299 GC04M001306
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABCA11P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ABCA11P gene promoter:
  • Ik-1

Genomic Locations for ABCA11P Gene

Genomic Locations for ABCA11P Gene
chr4:425,435-474,209
(GRCh38/hg38)
Size:
48,775 bases
Orientation:
Minus strand
chr4:419,224-467,998
(GRCh37/hg19)
Size:
48,775 bases
Orientation:
Minus strand

Genomic View for ABCA11P Gene

Genes around ABCA11P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCA11P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCA11P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ABCA11P Gene

Proteins for ABCA11P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for ABCA11P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4W5N1-ABCAB_HUMAN
    Recommended name:
    Putative ATP-binding cassette sub-family A member 11
    Protein Accession:
    Q4W5N1
    Secondary Accessions:
    • Q9H7T1

    Protein attributes for ABCA11P Gene

    Size:
    156 amino acids
    Molecular mass:
    17479 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ABCA11P Gene

Protein Expression for ABCA11P Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for ABCA11P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ABCA11P Gene

Domains & Families for ABCA11P Gene

Gene Families for ABCA11P Gene

HGNC:

Protein Domains for ABCA11P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ABCA11P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q4W5N1

UniProtKB/Swiss-Prot:

ABCAB_HUMAN :
  • Belongs to the ABC transporter superfamily. ABCA family.
Family:
  • Belongs to the ABC transporter superfamily. ABCA family.
genes like me logo Genes that share domains with ABCA11P: view

Function for ABCA11P Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Gene Ontology (GO) - Molecular Function for ABCA11P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005524 ATP binding IEA --
GO:0042626 ATPase activity, coupled to transmembrane movement of substances IBA --
genes like me logo Genes that share ontologies with ABCA11P: view
genes like me logo Genes that share phenotypes with ABCA11P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCA11P Gene

Localization for ABCA11P Gene

Gene Ontology (GO) - Cellular Components for ABCA11P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0043231 intracellular membrane-bounded organelle IBA --
genes like me logo Genes that share ontologies with ABCA11P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for ABCA11P Gene

Pathways & Interactions for ABCA11P Gene

SuperPathways for ABCA11P Gene

PathCards logo More details on SuperPathways for ABCA11P
No Data Available

Interacting Proteins for ABCA11P Gene

Gene Ontology (GO) - Biological Process for ABCA11P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006869 lipid transport IBA --
GO:0055085 transmembrane transport IEA --
genes like me logo Genes that share ontologies with ABCA11P: view

No data available for Pathways by source and SIGNOR curated interactions for ABCA11P Gene

Drugs & Compounds for ABCA11P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ABCA11P Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ABCA11P Gene

(1) REFSEQ mRNAs :
(13) Additional mRNA sequences :
(107) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCA11P Gene

ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA11P Gene

No ASD Table

Relevant External Links for ABCA11P Gene

GeneLoc Exon Structure for
ABCA11P
ECgene alternative splicing isoforms for
ABCA11P

Expression for ABCA11P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCA11P Gene

mRNA expression in normal human tissues for ABCA11P Gene
mRNA expression by GTEx for ABCA11P GenemRNA expression by BioGPS for ABCA11P Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ABCA11P Gene



Protein tissue co-expression partners for ABCA11P Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ABCA11P Gene:

ABCA11P

SOURCE GeneReport for Unigene cluster for ABCA11P Gene:

Hs.745030
genes like me logo Genes that share expression patterns with ABCA11P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCA11P Gene

Orthologs for ABCA11P Gene

Evolution for ABCA11P Gene

ENSEMBL:
Gene Tree for ABCA11P (if available)
TreeFam:
Gene Tree for ABCA11P (if available)

No data available for Orthologs for ABCA11P Gene

Paralogs for ABCA11P Gene

(5) SIMAP similar genes for ABCA11P Gene using alignment to 1 proteins:

  • ABCAB_HUMAN
genes like me logo Genes that share paralogs with ABCA11P: view

No data available for Paralogs for ABCA11P Gene

Variants for ABCA11P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for ABCA11P Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000087470 -- 450,639(-) T/C intron_variant
rs1000210678 -- 474,245(-) G/C upstream_transcript_variant
rs1000216685 -- 444,572(-) G/T intron_variant
rs1000366332 -- 461,917(-) G/A intron_variant
rs1000495102 -- 470,896(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ABCA11P Gene

Variant ID Type Subtype PubMed ID
dgv5077n100 CNV loss 25217958
dgv5078n100 CNV loss 25217958
dgv8875n54 CNV loss 21841781
esv2763816 CNV gain+loss 21179565
esv3569239 CNV loss 25503493
esv3599370 CNV loss 21293372
esv3599371 CNV loss 21293372
esv3599372 CNV loss 21293372
esv3893859 CNV gain 25118596
esv3893862 CNV gain 25118596
esv4769 OTHER complex 18987735
nsv1001899 CNV loss 25217958
nsv1006781 CNV gain 25217958
nsv1009336 CNV gain 25217958
nsv1012061 CNV loss 25217958
nsv1114478 CNV deletion 24896259
nsv461144 CNV loss 19166990
nsv461145 CNV gain 19166990
nsv469736 CNV loss 16826518
nsv517948 CNV loss 19592680
nsv521895 CNV loss 19592680
nsv593198 CNV loss 21841781
nsv593199 CNV loss 21841781
nsv593202 CNV gain 21841781
nsv593203 CNV loss 21841781
nsv964023 CNV duplication 23825009

Additional Variant Information for ABCA11P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCA11P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ABCA11P Gene

Disorders for ABCA11P Gene

Additional Disease Information for ABCA11P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for ABCA11P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCA11P Gene

Publications for ABCA11P Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3

Products for ABCA11P Gene

Sources for ABCA11P Gene

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