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Aliases for ABALON Gene

Subcategory (RNA class) for ABALON Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ABALON Gene

  • Apoptotic BCL2L1-Antisense Long Non-Coding RNA 2 3 5
  • Apoptotic BCL-X-Associated Long NcRNA 2 3
  • Intronic BCL-XS-Inducing LncRNA 2 3
  • INXS 3

External Ids for ABALON Gene

Previous GeneCards Identifiers for ABALON Gene

  • GC20U900831

Summaries for ABALON Gene

GeneCards Summary for ABALON Gene

ABALON (Apoptotic BCL2L1-Antisense Long Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with ABALON include Melanoma.

Additional gene information for ABALON Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABALON Gene

Genomics for ABALON Gene

GeneHancer (GH) Regulatory Elements for ABALON Gene

Promoters and enhancers for ABALON Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J031709 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.3 -4319 14.7 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 BCL2L1 ASXL1 TM9SF4 PLAGL2 MYLK2 COX4I2 PDRG1 DEFB121 RNU1-94P DEFB122
GH20J031702 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -15.3 -15301 6.8 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 COX4I2 ASXL1 TM9SF4 TPX2 ID1 BAK1P1 HM13 BCL2L1 ABALON LOC105372589
GH20J031693 Enhancer 1.5 Ensembl ENCODE dbSUPER 0.3 -23.7 -23743 9.2 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 FOS COX4I2 ASXL1 BCL2L1 ID1 PDRG1 HM13 DEFB121 ABALON LOC105372589
GH20J031683 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -35.2 -35187 4.7 HDAC1 IRF2 ZNF146 PKNOX1 ZNF133 EBF1 ZNF48 GATA3 POLR2A EED COX4I2 BCL2L1 TPX2 RNU6-384P HM13-AS1 MYLK2 LOC105372589 ABALON
GH20J031690 Enhancer 0.9 ENCODE dbSUPER 0.3 -29.8 -29753 2.4 KLF1 TFAP4 TEAD4 ZFHX2 EGR1 ZSCAN5C PRDM10 IKZF2 RUNX3 EGR2 BCL2L1 COX4I2 ID1 LOC105372589 ABALON
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ABALON on UCSC Golden Path with GeneCards custom track

Genomic Locations for ABALON Gene

Genomic Locations for ABALON Gene
chr20:31,721,507-31,723,409
(GRCh38/hg38)
Size:
1,903 bases
Orientation:
Plus strand

Genomic View for ABALON Gene

Genes around ABALON on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABALON Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABALON Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABALON Gene

Proteins for ABALON Gene

Post-translational modifications for ABALON Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABALON Gene

Domains & Families for ABALON Gene

Gene Families for ABALON Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ABALON: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABALON Gene

Function for ABALON Gene

Phenotypes From GWAS Catalog for ABALON Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABALON Gene

Localization for ABALON Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ABALON gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABALON Gene

Pathways & Interactions for ABALON Gene

SuperPathways for ABALON Gene

No Data Available

Interacting Proteins for ABALON Gene

Gene Ontology (GO) - Biological Process for ABALON Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABALON Gene

Drugs & Compounds for ABALON Gene

No Compound Related Data Available

Transcripts for ABALON Gene

mRNA/cDNA for ABALON Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ABALON Gene

No ASD Table

Relevant External Links for ABALON Gene

GeneLoc Exon Structure for
ABALON
ECgene alternative splicing isoforms for
ABALON

Expression for ABALON Gene

NURSA nuclear receptor signaling pathways regulating expression of ABALON Gene:

ABALON
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABALON Gene

Orthologs for ABALON Gene

Evolution for ABALON Gene

ENSEMBL:
Gene Tree for ABALON (if available)
TreeFam:
Gene Tree for ABALON (if available)

No data available for Orthologs for ABALON Gene

Paralogs for ABALON Gene

No data available for Paralogs for ABALON Gene

Variants for ABALON Gene

Sequence variations from dbSNP and Humsavar for ABALON Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000803301 -- 31,721,222(+) G/A upstream_transcript_variant
rs1001164696 -- 31,722,993(+) G/A non_coding_transcript_variant
rs1002278830 -- 31,720,572(+) G/C upstream_transcript_variant
rs1002477706 -- 31,722,684(+) G/C non_coding_transcript_variant
rs1004973591 -- 31,721,432(+) T/C upstream_transcript_variant

Additional Variant Information for ABALON Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABALON

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABALON Gene

Disorders for ABALON Gene

MalaCards: The human disease database

(1) MalaCards diseases for ABALON Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
melanoma
  • malignant melanoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ABALON

genes like me logo Genes that share disorders with ABALON: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ABALON Gene

Publications for ABALON Gene

  1. Long non-coding RNA INXS is a critical mediator of BCL-XS induced apoptosis. (PMID: 24992962) DeOcesano-Pereira C … Verjovski-Almeida S (Nucleic acids research 2014) 2 58

Products for ABALON Gene

Sources for ABALON Gene

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