Aliases for ABALON Gene

Subcategory (RNA class) for ABALON Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ABALON Gene

  • Apoptotic BCL2L1-Antisense Long Non-Coding RNA 2 3 5
  • Apoptotic BCL-X-Associated Long NcRNA 2 3
  • Intronic BCL-XS-Inducing LncRNA 2 3
  • ABALON 2 5
  • INXS 2 3
  • HSALNG0129511 164

External Ids for ABALON Gene

Previous GeneCards Identifiers for ABALON Gene

  • GC20U900831

Summaries for ABALON Gene

GeneCards Summary for ABALON Gene

ABALON (Apoptotic BCL2L1-Antisense Long Non-Coding RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ABALON include Melanoma.

Additional gene information for ABALON Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ABALON Gene

Genomics for ABALON Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ABALON Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J031709 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.3 -4318 14.7 SP1 HNRNPL CREB1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 TFE3 RFX1 BCL2L1 TM9SF4 ASXL1 PLAGL2 MYLK2 MCTS2P COX4I2 BAK1P1 POFUT1 TSPY26P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ABALON on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ABALON Gene

Genomic Locations for ABALON Gene
chr20:31,721,506-31,723,409
(GRCh38/hg38)
Size:
1,904 bases
Orientation:
Plus strand

Genomic View for ABALON Gene

Genes around ABALON on UCSC Golden Path with GeneCards custom track
ABALON in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ABALON Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABALON Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABALON Gene

Proteins for ABALON Gene

Post-translational modifications for ABALON Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABALON Gene

Domains & Families for ABALON Gene

Gene Families for ABALON Gene

genes like me logo Genes that share domains with ABALON: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ABALON Gene

Function for ABALON Gene

Phenotypes From GWAS Catalog for ABALON Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABALON Gene

Localization for ABALON Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ABALON gene
Compartment Confidence
plasma membrane 1
extracellular 1
mitochondrion 1
nucleus 1
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABALON Gene

Pathways & Interactions for ABALON Gene

PathCards logo

SuperPathways for ABALON Gene

No Data Available

Gene Ontology (GO) - Biological Process for ABALON Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ABALON Gene

Drugs & Compounds for ABALON Gene

No Compound Related Data Available

Transcripts for ABALON Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ABALON Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000047716D_9606 lncRNA 1903 4

HGNC: 49667,

RefSeq: NR_131907,

Ensembl: ENST00000629058 (view in UCSC) ,

ENA: KC505631.1:1..1903:ncRNA,

URS0000E99F19_9606 lncRNA 1904 1

LncBook: HSALNT0266298,

ABALON in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ABALON Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ABALON Gene

No ASD Table

Relevant External Links for ABALON Gene

GeneLoc Exon Structure for
ABALON

Expression for ABALON Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABALON Gene

Orthologs for ABALON Gene

Evolution for ABALON Gene

ENSEMBL:
Gene Tree for ABALON (if available)
TreeFam:
Gene Tree for ABALON (if available)

No data available for Orthologs for ABALON Gene

Paralogs for ABALON Gene

No data available for Paralogs for ABALON Gene

Variants for ABALON Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ABALON Gene

SNP ID Clinical significance and condition Chr 20 pos Variation AA Info Type
741517 Likely Benign: not provided 31,721,874(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
754757 Likely Benign: not provided 31,721,661(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for ABALON Gene

Additional Variant Information for ABALON Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABALON

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABALON Gene

Disorders for ABALON Gene

MalaCards: The human disease database

(1) MalaCards diseases for ABALON Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
melanoma
  • malignant melanoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ABALON: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ABALON Gene

Publications for ABALON Gene

No publications were found for ABALON Gene.

Products for ABALON Gene

Sources for ABALON Gene