AB372778-013 Gene (RNA Gene)

 

GC17M050585
GIFtS:
3
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Aliases for AB372778-013 Gene

Subcategory (RNA class) for AB372778-013 Gene

miRNA

Number of RNA Genes sources:

1 / 17

Aliases for AB372778-013 Gene

No Aliases found

No data available for External Ids for AB372778-013 Gene

Summaries for AB372778-013 Gene

GeneCards Summary for AB372778-013 Gene

AB372778-013 is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for AB372778-013 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AB372778-013 Gene

Genomics for AB372778-013 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for AB372778-013 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J050584 Enhancer 0.5 Ensembl 600.7 -0.7 -729 2.4 KDM1A FOXA1 ZIC2 ZNF600 ZFHX2 GLIS1 ZNF398 ZMYM3 MAFK AB372778-013 SPATA20 CACNA1G-AS1 ENSG00000250286 EPN3 MYCBPAP ABCC3 LOC101927253 ACSF2 CHAD
GH17J050582 Enhancer 0.4 Ensembl 600.7 +1.8 1771 2.2 PKNOX1 SP2 MEIS2 AB372778-013 SPATA20 CACNA1G-AS1 ENSG00000250286 EPN3 MYCBPAP LOC101927253 ABCC3 ACSF2 CHAD
GH17J050588 Enhancer 0.6 Ensembl ENCODE 0.7 -4.3 -4329 2.4 CREB1 ZSCAN4 SCRT2 ESR1 NR2F2 ZNF335 SPATA20 CACNA1G-AS1 CACNA1G ENSG00000250286 EPN3 MYCBPAP LOC101927253 ABCC3 CHAD ACSF2
GH17J050593 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.4 -8.5 -8538 2.8 RFX1 POLR2A PATZ1 ZNF600 ZNF341 RFX3 BMI1 SPI1 RCOR1 GLI4 AB372778-013 CACNA1G LOC101927253 ABCC3
GH17J050623 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -39.7 -39729 3.6 HNRNPL GATAD2A CTCF TFE3 NFKBIZ RCOR2 ZIC2 ZNF24 RXRB REST ABCC3 SPATA20 LOC101927253 AB372778-013 CACNA1G
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AB372778-013 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AB372778-013 Gene

Genomic Locations for AB372778-013 Gene
chr17:50,585,255-50,585,272
(GRCh38/hg38)
Size:
18 bases
Orientation:
Minus strand

Genomic View for AB372778-013 Gene

Genes around AB372778-013 on UCSC Golden Path with GeneCards custom track
AB372778-013 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

AB372778-013 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AB372778-013 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for AB372778-013 Gene

Proteins for AB372778-013 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for AB372778-013 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AB372778-013 Gene

Domains & Families for AB372778-013 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AB372778-013 Gene

Function for AB372778-013 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for AB372778-013 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AB372778-013 Gene

Localization for AB372778-013 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AB372778-013 Gene

Pathways & Interactions for AB372778-013 Gene

PathCards logo

SuperPathways for AB372778-013 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AB372778-013 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AB372778-013 Gene

Drugs & Compounds for AB372778-013 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for AB372778-013 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AB372778-013 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000169307_9606 miRNA 18 1

ENA: AB372778.1:1..18:ncRNA,

AB372778-013 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for AB372778-013 Gene

No ASD Table

Relevant External Links for AB372778-013 Gene

GeneLoc Exon Structure for
AB372778-013

No data available for mRNA/cDNA for AB372778-013 Gene

Expression for AB372778-013 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AB372778-013 Gene

Orthologs for AB372778-013 Gene

No data available for Orthologs and Evolution for AB372778-013 Gene

Paralogs for AB372778-013 Gene

No data available for Paralogs for AB372778-013 Gene

Variants for AB372778-013 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for AB372778-013 Gene

Disorders for AB372778-013 Gene

No disorders were found for AB372778-013 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AB372778-013 Gene

Publications for AB372778-013 Gene

No publications were found for AB372778-013 Gene.

No data available for Mastermind for AB372778-013 Gene

Products for AB372778-013 Gene

Sources for AB372778-013 Gene