Aliases for AB372742-001 Gene

Subcategory (RNA class) for AB372742-001 Gene

miRNA

Number of RNA Genes sources:

1 / 17

Aliases for AB372742-001 Gene

No Aliases found

No data available for External Ids for AB372742-001 Gene

Summaries for AB372742-001 Gene

GeneCards Summary for AB372742-001 Gene

AB372742-001 is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for AB372742-001 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AB372742-001 Gene

Genomics for AB372742-001 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AB372742-001 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J070670 Enhancer 0.4 Ensembl 600.7 -1.4 -1446 2 ZIC2 POLR2A CTCF SMARCA4 AB372742-001 ENSG00000207196 CTTN SHANK2
GH11J070661 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +7.4 7400 1.9 POLR2A RAD21 EZH2 TAF1 EGR2 SHANK2 AB372742-001 SHANK2-AS2 CTTN
GH11J070650 Enhancer 1 ENCODE 0.4 +19.1 19057 0.2 GATAD2A REST TFE3 NFKBIZ RCOR2 ZNF7 TARDBP MTA2 ZNF143 ZIC2 SHANK2-AS2 AB372742-001 CTTN SHANK2
GH11J070646 Enhancer 0.7 Ensembl ENCODE 0.4 +23.2 23247 1 ZNF140 ZNF266 ZNF623 ZBTB11 ZC3H11A ZFP64 ZNF781 ZNF518A ZNF558 ZNF697 LTO1 NADSYN1 FADD CTTN SHANK2-AS2 AB372742-001 SHANK2
GH11J070699 Enhancer 0.9 Ensembl ENCODE 0.3 -30.6 -30621 0.9 SIX5 ZNF143 REST IRF2 CEBPA USF2 RAD51 USF1 ZNF217 HCFC1 SHANK2-AS2 ENSG00000207196 AB372742-001 CTTN SHANK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AB372742-001 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AB372742-001 Gene

Genomic Locations for AB372742-001 Gene
chr11:70,669,521-70,669,548
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand

Genomic View for AB372742-001 Gene

Genes around AB372742-001 on UCSC Golden Path with GeneCards custom track
AB372742-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

AB372742-001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AB372742-001 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for AB372742-001 Gene

Proteins for AB372742-001 Gene

Post-translational modifications for AB372742-001 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AB372742-001 Gene

Domains & Families for AB372742-001 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AB372742-001 Gene

Function for AB372742-001 Gene

Phenotypes From GWAS Catalog for AB372742-001 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AB372742-001 Gene

Localization for AB372742-001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AB372742-001 Gene

Pathways & Interactions for AB372742-001 Gene

PathCards logo

SuperPathways for AB372742-001 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AB372742-001 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AB372742-001 Gene

Drugs & Compounds for AB372742-001 Gene

No Compound Related Data Available

Transcripts for AB372742-001 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AB372742-001 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004ECD62_9606 miRNA 21 1

ENA: AB372742.1:1..21:ncRNA,

AB372742-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for AB372742-001 Gene

No ASD Table

Relevant External Links for AB372742-001 Gene

GeneLoc Exon Structure for
AB372742-001

No data available for mRNA/cDNA for AB372742-001 Gene

Expression for AB372742-001 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AB372742-001 Gene

Orthologs for AB372742-001 Gene

No data available for Orthologs and Evolution for AB372742-001 Gene

Paralogs for AB372742-001 Gene

No data available for Paralogs for AB372742-001 Gene

Variants for AB372742-001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for AB372742-001 Gene

Disorders for AB372742-001 Gene

No disorders were found for AB372742-001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AB372742-001 Gene

Publications for AB372742-001 Gene

No publications were found for AB372742-001 Gene.

No data available for Mastermind for AB372742-001 Gene

Products for AB372742-001 Gene

Sources for AB372742-001 Gene