Aliases for AATBC Gene

Subcategory (RNA class) for AATBC Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for AATBC Gene

  • Apoptosis Associated Transcript In Bladder Cancer 2 3 5
  • AATBC 2 170
  • Apoptosis-Associated Transcript In Bladder Cancer 2
  • NONHSAG032997 94
  • HSALNG0133454 169
  • HSALNG0133458 169

External Ids for AATBC Gene

Summaries for AATBC Gene

GeneCards Summary for AATBC Gene

AATBC (Apoptosis Associated Transcript In Bladder Cancer) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with AATBC include Bladder Cancer.

Additional gene information for AATBC Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AATBC Gene

Genomics for AATBC Gene

GeneHancer (GH) Regulatory Elements for AATBC Gene

Promoters and enhancers for AATBC Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043818 Promoter/Enhancer 0.6 FANTOM5 Ensembl 750.6 +0.8 773 0.4 CEBPB AATBC CSTB AGPAT3 TRAPPC10 ICOSLG RF00017-3724
GH21J043815 Enhancer 0.4 ENCODE 750.6 +1.9 1928 0.2 CTCF DPF2 NR2F1 GLIS1 AATBC RF00017-3724
GH21J043974 Enhancer 1.1 ENCODE dbSUPER 17.7 -156.7 -156716 1 ZNF785 CTCF CC2D1A L3MBTL2 RAD21 ZC3H8 BCL6B GTF2F1 POLR2A MLLT1 RRP1B U2AF1 PWP2 TRAPPC10 UBE2G2 AATBC SIK1 CFAP410 RNU6-859P AGPAT3
GH21J043788 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 8.2 +29.0 28962 2.8 ZNF24 SP1 ZBTB40 CTCF SREBF1 SIX5 ZBTB6 MLX RBPJ SMARCE1 RRP1 piR-43105-408 RRP1B WDR4 CFAP410 PKNOX1 ENSG00000184441 CSTB PWP2 U2AF1
GH21J043892 Enhancer 0.9 ENCODE dbSUPER 16.9 -75.0 -75033 2 SMARCE1 ELF1 L3MBTL2 ZNF148 GTF2F1 PRDM1 CREM HDAC1 LEF1 ZNF316 AATBC AGPAT3 RNU6-859P RF00994-608 piR-31432-434
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AATBC on UCSC Golden Path with GeneCards custom track

Genomic Locations for AATBC Gene

Genomic Locations for AATBC Gene
chr21:43,800,811-43,818,763
(GRCh38/hg38)
Size:
17,953 bases
Orientation:
Minus strand
chr21:45,225,639-45,232,448
(GRCh37/hg19)
Size:
6,810 bases
Orientation:
Minus strand

Genomic View for AATBC Gene

Genes around AATBC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AATBC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AATBC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AATBC Gene

Proteins for AATBC Gene

Post-translational modifications for AATBC Gene

No Post-translational modifications

No data available for DME Specific Peptides for AATBC Gene

Domains & Families for AATBC Gene

Gene Families for AATBC Gene

Suggested Antigen Peptide Sequences for AATBC Gene

GenScript: Design optimal peptide antigens:
  • LOC284837 protein (Q8N4G5_HUMAN)
genes like me logo Genes that share domains with AATBC: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AATBC Gene

Function for AATBC Gene

Phenotypes From GWAS Catalog for AATBC Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AATBC Gene

Localization for AATBC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AATBC Gene

Pathways & Interactions for AATBC Gene

PathCards logo

SuperPathways for AATBC Gene

No Data Available

Gene Ontology (GO) - Biological Process for AATBC Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AATBC Gene

Drugs & Compounds for AATBC Gene

No Compound Related Data Available

Transcripts for AATBC Gene

mRNA/cDNA for AATBC Gene

(2) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(20) RNACentral transcripts :
(18) LNCipedia transcripts :
(9) NONCODE transcripts :
(4) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AATBC Gene

No ASD Table

Relevant External Links for AATBC Gene

GeneLoc Exon Structure for
AATBC
ECgene alternative splicing isoforms for
AATBC

Expression for AATBC Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AATBC Gene

NURSA nuclear receptor signaling pathways regulating expression of AATBC Gene:

AATBC
genes like me logo Genes that share expression patterns with AATBC: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AATBC Gene

Orthologs for AATBC Gene

Evolution for AATBC Gene

ENSEMBL:
Gene Tree for AATBC (if available)
TreeFam:
Gene Tree for AATBC (if available)

No data available for Orthologs for AATBC Gene

Paralogs for AATBC Gene

No data available for Paralogs for AATBC Gene

Variants for AATBC Gene

Sequence variations from dbSNP and Humsavar for AATBC Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000236248 -- 43,810,315(-) CC/ non_coding_transcript_variant
rs1000664766 -- 43,811,614(-) G/A/T non_coding_transcript_variant
rs1001605027 -- 43,813,134(-) G/A upstream_transcript_variant
rs1001907691 -- 43,812,028(-) G/A non_coding_transcript_variant
rs1001938863 -- 43,809,261(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for AATBC Gene

Variant ID Type Subtype PubMed ID
esv33817 CNV loss 17666407
nsv470904 CNV loss 18288195
nsv509799 CNV insertion 20534489
nsv520305 CNV loss 19592680
nsv522204 CNV loss 19592680
nsv587718 CNV loss 21841781
nsv587719 CNV loss 21841781
nsv587720 CNV loss 21841781
nsv834107 CNV loss 17160897
nsv834108 CNV loss 17160897
nsv953642 CNV deletion 24416366

Additional Variant Information for AATBC Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AATBC

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AATBC Gene

Disorders for AATBC Gene

MalaCards: The human disease database

(1) MalaCards diseases for AATBC Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
bladder cancer
  • bladder cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
Search AATBC in MalaCards View complete list of genes associated with diseases

Additional Disease Information for AATBC

genes like me logo Genes that share disorders with AATBC: view

No data available for UniProtKB/Swiss-Prot and Genatlas for AATBC Gene

Publications for AATBC Gene

  1. Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer. (PMID: 25473900) Zhao F … Xie W (Oncotarget 2015) 2 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for AATBC Gene

Sources for AATBC Gene