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Aliases for AATBC Gene

Subcategory (RNA class) for AATBC Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for AATBC Gene

  • Apoptosis Associated Transcript In Bladder Cancer 2 3 5
  • Apoptosis-Associated Transcript In Bladder Cancer 2

External Ids for AATBC Gene

Summaries for AATBC Gene

GeneCards Summary for AATBC Gene

AATBC (Apoptosis Associated Transcript In Bladder Cancer) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with AATBC include Bladder Cancer.

Additional gene information for AATBC Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AATBC Gene

Genomics for AATBC Gene

GeneHancer (GH) Regulatory Elements for AATBC Gene

Promoters and enhancers for AATBC Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043809 Enhancer 1.2 Ensembl ENCODE 658.8 +1.0 977 3.4 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 ZBTB7B ZNF213 ZNF207 ZNF143 AATBC ENSG00000184441 CSTB WDR4 PWP2 TRAPPC10 RRP1B C21orf2 RRP1 GC21P043803
GH21J043974 Enhancer 1.4 Ensembl ENCODE dbSUPER 17.7 -162.9 -162912 1 HDGF ATF1 ARNT SIN3A YBX1 GLI4 TCF12 ZNF280A POLR2B CBX5 RRP1B PWP2 U2AF1 TRAPPC10 AATBC SIK1 UBE2G2 RNU6-859P AGPAT3 RRP1
GH21J043892 Enhancer 1.2 Ensembl ENCODE dbSUPER 16.9 -81.2 -81229 2 HDAC1 HDGF NFXL1 BATF IRF4 ZNF766 ATF7 BCLAF1 RUNX3 CREM AATBC AGPAT3 RNU6-859P GC21M043897
GH21J043863 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 7 -53.9 -53876 5.4 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 YY1 AGPAT3 RNU6-859P UBE2G2 RRP1B HSF2BP WDR4 PWP2 AATBC GC21M043897
GH21J043788 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 8.3 +22.8 22811 2.4 SMAD1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZBTB7B IRF4 YY1 RRP1 RRP1B ENSG00000184441 WDR4 PKNOX1 SIK1 PWP2 U2AF1 C21orf2 AATBC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AATBC on UCSC Golden Path with GeneCards custom track

Genomic Locations for AATBC Gene

Genomic Locations for AATBC Gene
chr21:43,805,758-43,812,567
(GRCh38/hg38)
Size:
6,810 bases
Orientation:
Minus strand
chr21:45,225,639-45,232,448
(GRCh37/hg19)
Size:
6,810 bases
Orientation:
Minus strand

Genomic View for AATBC Gene

Genes around AATBC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AATBC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AATBC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AATBC Gene

Proteins for AATBC Gene

Post-translational modifications for AATBC Gene

No Post-translational modifications

No data available for DME Specific Peptides for AATBC Gene

Domains & Families for AATBC Gene

Gene Families for AATBC Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AATBC: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AATBC Gene

Function for AATBC Gene

Phenotypes From GWAS Catalog for AATBC Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AATBC Gene

Localization for AATBC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AATBC Gene

Pathways & Interactions for AATBC Gene

SuperPathways for AATBC Gene

No Data Available

Interacting Proteins for AATBC Gene

Gene Ontology (GO) - Biological Process for AATBC Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AATBC Gene

Drugs & Compounds for AATBC Gene

No Compound Related Data Available

Transcripts for AATBC Gene

mRNA/cDNA for AATBC Gene

(1) REFSEQ mRNAs :
(12) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AATBC Gene

No ASD Table

Relevant External Links for AATBC Gene

GeneLoc Exon Structure for
AATBC
ECgene alternative splicing isoforms for
AATBC

Expression for AATBC Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AATBC Gene

NURSA nuclear receptor signaling pathways regulating expression of AATBC Gene:

AATBC
genes like me logo Genes that share expression patterns with AATBC: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AATBC Gene

Orthologs for AATBC Gene

Evolution for AATBC Gene

ENSEMBL:
Gene Tree for AATBC (if available)
TreeFam:
Gene Tree for AATBC (if available)

No data available for Orthologs for AATBC Gene

Paralogs for AATBC Gene

No data available for Paralogs for AATBC Gene

Variants for AATBC Gene

Sequence variations from dbSNP and Humsavar for AATBC Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000236248 -- 43,810,315(-) CC/ non_coding_transcript_variant
rs1000664766 -- 43,811,614(-) G/A/T non_coding_transcript_variant
rs1001605027 -- 43,813,134(-) G/A upstream_transcript_variant
rs1001907691 -- 43,812,028(-) G/A non_coding_transcript_variant
rs1001938863 -- 43,809,261(-) C/T non_coding_transcript_variant

Additional Variant Information for AATBC Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AATBC

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AATBC Gene

Disorders for AATBC Gene

MalaCards: The human disease database

(1) MalaCards diseases for AATBC Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
bladder cancer
  • bladder cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
Search AATBC in MalaCards View complete list of genes associated with diseases

Additional Disease Information for AATBC

genes like me logo Genes that share disorders with AATBC: view

No data available for UniProtKB/Swiss-Prot and Genatlas for AATBC Gene

Publications for AATBC Gene

  1. Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer. (PMID: 25473900) Zhao F … Xie W (Oncotarget 2015) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for AATBC Gene

Sources for AATBC Gene

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