Aliases for AADACL2-AS1 Gene

Subcategory (RNA class) for AADACL2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for AADACL2-AS1 Gene

  • AADACL2 Antisense RNA 1 2 3 5
  • AADACL2-AS1 2 5 165
  • NONHSAG036403.2 91
  • HSALNG0029854 164
  • HSALNG0029842 164
  • Lnc-IGSF10-1 165

External Ids for AADACL2-AS1 Gene

Previous GeneCards Identifiers for AADACL2-AS1 Gene

  • GC03M151751

Summaries for AADACL2-AS1 Gene

GeneCards Summary for AADACL2-AS1 Gene

AADACL2-AS1 (AADACL2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AADACL2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AADACL2-AS1 Gene

Genomics for AADACL2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AADACL2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J151928 Promoter 0.4 EPDnew 600.7 0.0 -22 0.1 ZBTB33 AADACL2-AS1 piR-39098-157 SUCNR1 MBNL1
GH03J151925 Enhancer 0.4 ENCODE 600.7 +1.5 1460 2.3 JUND FOS MAX POLR2A AADACL2-AS1 piR-39098-157 AADAC SUCNR1 lnc-SUCNR1-3 MBNL1
GH03J151686 Enhancer 0.6 Ensembl 13.1 +241.8 241775 0.4 JUND CBX3 HMBOX1 FOSL1 ZFHX2 STAT5A MYNN NR2F1 CREM NR2F6 AADACL2-AS1 LINC02066 piR-57134-085 piR-33730-060 AADACL2 IGSF10
GH03J151676 Enhancer 0.7 Ensembl 12 +251.9 251875 1 ZNF24 ZNF740 ZNF766 MEF2D GTF2A2 RELA ZNF644 TFDP1 ZNF592 ZNF395 AADACL2-AS1 LINC02066 piR-33730-060 piR-57134-085 AADACL2 IGSF10
GH03J151708 Enhancer 0.2 Ensembl 15 +219.5 219475 1 AADACL2-AS1 piR-60184-006 lnc-AADACL2-3 AADACL2 IGSF10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AADACL2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AADACL2-AS1 Gene

Genomic Locations for AADACL2-AS1 Gene
chr3:151,538,966-151,928,176
(GRCh38/hg38)
Size:
389,211 bases
Orientation:
Minus strand
chr3:151,469,231-151,645,963
(GRCh37/hg19)
Size:
176,733 bases
Orientation:
Minus strand

Genomic View for AADACL2-AS1 Gene

Genes around AADACL2-AS1 on UCSC Golden Path with GeneCards custom track
AADACL2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AADACL2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AADACL2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AADACL2-AS1 Gene

Proteins for AADACL2-AS1 Gene

Post-translational modifications for AADACL2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AADACL2-AS1 Gene

Domains & Families for AADACL2-AS1 Gene

Gene Families for AADACL2-AS1 Gene

genes like me logo Genes that share domains with AADACL2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AADACL2-AS1 Gene

Function for AADACL2-AS1 Gene

Phenotypes From GWAS Catalog for AADACL2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AADACL2-AS1 Gene

Localization for AADACL2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AADACL2-AS1 Gene

Pathways & Interactions for AADACL2-AS1 Gene

PathCards logo

SuperPathways for AADACL2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AADACL2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AADACL2-AS1 Gene

Drugs & Compounds for AADACL2-AS1 Gene

No Compound Related Data Available

Transcripts for AADACL2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AADACL2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D0ED_9606 lncRNA 772 4

HGNC: 50301,

RefSeq: NR_110202,

LncBook: HSALNT0062305,

LNCipedia: AADACL2-AS1:2,

URS000075DB52_9606 lncRNA 712 4

RefSeq: NR_110203,

LncBook: HSALNT0062303,

LNCipedia: AADACL2-AS1:3,

NONCODE: NONHSAT196423.1,

URS000026572B_9606 lncRNA 628 3

Ensembl: ENST00000483843 (view in UCSC) ,

LNCipedia: AADACL2-AS1:4,

NONCODE: NONHSAT092734.2,

URS0000260A52_9606 lncRNA 480 3

Ensembl: ENST00000475855 (view in UCSC) ,

LNCipedia: AADACL2-AS1:1,

NONCODE: NONHSAT092735.2,

URS00008B53ED_9606 lncRNA 409 3

LncBook: HSALNT0062283,

LNCipedia: lnc-IGSF10-1:1,

NONCODE: NONHSAT092729.2,

AADACL2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for AADACL2-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for AADACL2-AS1 Gene

No ASD Table

Relevant External Links for AADACL2-AS1 Gene

GeneLoc Exon Structure for
AADACL2-AS1

Expression for AADACL2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AADACL2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for AADACL2-AS1

genes like me logo Genes that share expression patterns with AADACL2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AADACL2-AS1 Gene

Orthologs for AADACL2-AS1 Gene

Evolution for AADACL2-AS1 Gene

ENSEMBL:
Gene Tree for AADACL2-AS1 (if available)
TreeFam:
Gene Tree for AADACL2-AS1 (if available)

No data available for Orthologs for AADACL2-AS1 Gene

Paralogs for AADACL2-AS1 Gene

No data available for Paralogs for AADACL2-AS1 Gene

Variants for AADACL2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for AADACL2-AS1 Gene

SNP ID Clinical significance and condition Chr 03 pos Variation AA Info Type
713065 Benign: not provided 151,880,738(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for AADACL2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AADACL2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1419e212 CNV loss 25503493
dgv4919n100 CNV loss 25217958
dgv4920n100 CNV loss 25217958
dgv4921n100 CNV loss 25217958
dgv621n27 CNV loss 19166990
dgv622n27 CNV loss 19166990
dgv8652n54 CNV loss 21841781
dgv8653n54 CNV loss 21841781
dgv8654n54 CNV loss 21841781
dgv8655n54 CNV loss 21841781
esv25716 CNV loss 19812545
esv2659115 CNV deletion 23128226
esv2672544 CNV deletion 23128226
esv2678264 CNV deletion 23128226
esv2726061 CNV deletion 23290073
esv2726063 CNV deletion 23290073
esv2759189 CNV loss 17122850
esv2760783 CNV loss 21179565
esv2763771 CNV loss 21179565
esv3562725 CNV deletion 23714750
esv3562727 CNV deletion 23714750
esv3598186 CNV loss 21293372
esv3598187 CNV loss 21293372
esv3598188 CNV loss 21293372
esv3598189 CNV loss 21293372
esv3598191 CNV loss 21293372
esv3893786 CNV loss 25118596
nsv1131739 CNV deletion 24896259
nsv1133326 CNV tandem duplication 24896259
nsv4067 CNV insertion 18451855
nsv477315 CNV novel sequence insertion 20440878
nsv514175 CNV loss 21397061
nsv517155 CNV loss 19592680
nsv522472 CNV loss 19592680
nsv592055 CNV loss 21841781
nsv592056 CNV loss 21841781
nsv592069 CNV loss 21841781
nsv592070 CNV loss 21841781
nsv592072 CNV loss 21841781
nsv829758 CNV gain 17160897

Additional Variant Information for AADACL2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AADACL2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AADACL2-AS1 Gene

Disorders for AADACL2-AS1 Gene

No disorders were found for AADACL2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AADACL2-AS1 Gene

Publications for AADACL2-AS1 Gene

  1. Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency. (PMID: 20694011) Ferreira RC … Hammarström L (Nature genetics 2010) 3

Products for AADACL2-AS1 Gene

Sources for AADACL2-AS1 Gene