Aliases for AADACL2-AS1 Gene

Subcategory (RNA class) for AADACL2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for AADACL2-AS1 Gene

  • AADACL2 Antisense RNA 1 2 3 5
  • AADACL2-AS1 2 170
  • HSALNG0029842 169
  • HSALNG0029854 169
  • NONHSAG036403 94
  • Lnc-IGSF10-1 170

External Ids for AADACL2-AS1 Gene

Previous GeneCards Identifiers for AADACL2-AS1 Gene

  • GC03M151751

Summaries for AADACL2-AS1 Gene

GeneCards Summary for AADACL2-AS1 Gene

AADACL2-AS1 (AADACL2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AADACL2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AADACL2-AS1 Gene

Genomics for AADACL2-AS1 Gene

GeneHancer (GH) Regulatory Elements for AADACL2-AS1 Gene

Promoters and enhancers for AADACL2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J151925 Enhancer 0.4 ENCODE 750.6 +1.5 1460 2.3 POLR2A JUND MAX FOS AADACL2-AS1 piR-39098-157 AADAC SUCNR1 lnc-SUCNR1-3
GH03J151686 Enhancer 0.6 Ensembl 13.1 +241.8 241775 0.4 TEAD4 EGR1 FOSL1 CREM ZFHX2 DPF2 MYNN ATF1 CHAMP1 CBFA2T3 AADACL2-AS1 LINC02066 piR-57134-085 piR-33730-060
GH03J151676 Enhancer 0.6 Ensembl 12 +251.9 251875 1 BACH1 ZNF639 CAVIN1 ZNF740 ZNF766 MEF2D GTF2A2 ZNF644 CEBPB ZNF592 ENSG00000243305 MBNL1 ENSG00000201217 AADACL2-AS1 LINC02066 MBNL1-AS1 piR-33730-060 piR-57134-085
GH03J151708 Enhancer 0.2 Ensembl 15 +219.5 219475 1 AADACL2-AS1 piR-60184-006 lnc-AADACL2-3
GH03J151687 Enhancer 0.2 Ensembl 14.6 +240.8 240775 0.4 AADACL2-AS1 LINC02066 AADACP1 piR-57134-085 piR-33730-060
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AADACL2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AADACL2-AS1 Gene

Genomic Locations for AADACL2-AS1 Gene
chr3:151,538,966-151,928,176
(GRCh38/hg38)
Size:
389,211 bases
Orientation:
Minus strand
chr3:151,469,231-151,645,963
(GRCh37/hg19)
Size:
176,733 bases
Orientation:
Minus strand

Genomic View for AADACL2-AS1 Gene

Genes around AADACL2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AADACL2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AADACL2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AADACL2-AS1 Gene

Proteins for AADACL2-AS1 Gene

Post-translational modifications for AADACL2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AADACL2-AS1 Gene

Domains & Families for AADACL2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AADACL2-AS1 Gene

Function for AADACL2-AS1 Gene

Phenotypes From GWAS Catalog for AADACL2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AADACL2-AS1 Gene

Localization for AADACL2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AADACL2-AS1 Gene

Pathways & Interactions for AADACL2-AS1 Gene

PathCards logo

SuperPathways for AADACL2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AADACL2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AADACL2-AS1 Gene

Drugs & Compounds for AADACL2-AS1 Gene

No Compound Related Data Available

Transcripts for AADACL2-AS1 Gene

mRNA/cDNA for AADACL2-AS1 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(7) NONCODE transcripts :
(7) LNCipedia transcripts :
(6) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AADACL2-AS1 Gene

No ASD Table

Relevant External Links for AADACL2-AS1 Gene

GeneLoc Exon Structure for
AADACL2-AS1
ECgene alternative splicing isoforms for
AADACL2-AS1

Expression for AADACL2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AADACL2-AS1 Gene

genes like me logo Genes that share expression patterns with AADACL2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AADACL2-AS1 Gene

Orthologs for AADACL2-AS1 Gene

Evolution for AADACL2-AS1 Gene

ENSEMBL:
Gene Tree for AADACL2-AS1 (if available)
TreeFam:
Gene Tree for AADACL2-AS1 (if available)

No data available for Orthologs for AADACL2-AS1 Gene

Paralogs for AADACL2-AS1 Gene

No data available for Paralogs for AADACL2-AS1 Gene

Variants for AADACL2-AS1 Gene

Sequence variations from dbSNP and Humsavar for AADACL2-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000028674 -- 151,783,811(-) T/C/G intron_variant
rs1000034320 -- 151,879,511(-) C/T intron_variant
rs1000037785 -- 151,788,528(-) G/C intron_variant
rs1000054581 -- 151,928,185(-) C/A/G/T upstream_transcript_variant
rs1000063439 -- 151,885,271(-) C/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for AADACL2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1419e212 CNV loss 25503493
dgv4919n100 CNV loss 25217958
dgv4920n100 CNV loss 25217958
dgv4921n100 CNV loss 25217958
dgv621n27 CNV loss 19166990
dgv622n27 CNV loss 19166990
dgv8652n54 CNV loss 21841781
dgv8653n54 CNV loss 21841781
dgv8654n54 CNV loss 21841781
dgv8655n54 CNV loss 21841781
esv25716 CNV loss 19812545
esv2659115 CNV deletion 23128226
esv2672544 CNV deletion 23128226
esv2678264 CNV deletion 23128226
esv2726061 CNV deletion 23290073
esv2726063 CNV deletion 23290073
esv2759189 CNV loss 17122850
esv2760783 CNV loss 21179565
esv2763771 CNV loss 21179565
esv3562725 CNV deletion 23714750
esv3562727 CNV deletion 23714750
esv3598186 CNV loss 21293372
esv3598187 CNV loss 21293372
esv3598188 CNV loss 21293372
esv3598189 CNV loss 21293372
esv3598191 CNV loss 21293372
esv3893786 CNV loss 25118596
nsv1131739 CNV deletion 24896259
nsv1133326 CNV tandem duplication 24896259
nsv4067 CNV insertion 18451855
nsv477315 CNV novel sequence insertion 20440878
nsv514175 CNV loss 21397061
nsv517155 CNV loss 19592680
nsv522472 CNV loss 19592680
nsv592055 CNV loss 21841781
nsv592056 CNV loss 21841781
nsv592069 CNV loss 21841781
nsv592070 CNV loss 21841781
nsv592072 CNV loss 21841781
nsv829758 CNV gain 17160897

Additional Variant Information for AADACL2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AADACL2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AADACL2-AS1 Gene

Disorders for AADACL2-AS1 Gene

Additional Disease Information for AADACL2-AS1

No disorders were found for AADACL2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AADACL2-AS1 Gene

Publications for AADACL2-AS1 Gene

  1. Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency. (PMID: 20694011) Ferreira RC … Hammarström L (Nature genetics 2010) 3 56

Products for AADACL2-AS1 Gene

Sources for AADACL2-AS1 Gene