Aliases for AA06 Gene

Aliases for AA06 Gene

  • Uncharacterized LOC100506677 3
  • Novel Transcript, Sense Intronic ASIC2 5
  • NONHSAG021500.2 91
  • HSALNG0115830 164
  • Lnc-MYO1D-3 165
  • AC011824.3 5
  • AA02 3
  • AA04 3
  • AA05 3

External Ids for AA06 Gene

Previous GeneCards Identifiers for AA06 Gene

  • GC17M031856

Summaries for AA06 Gene

GeneCards Summary for AA06 Gene

AA06 (Uncharacterized LOC100506677) is a Pseudogene.

Additional gene information for AA06 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AA06 Gene

Genomics for AA06 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AA06 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J033519 Enhancer 0.8 Ensembl ENCODE 0.4 +13.1 13112 2.2 CTCF REST RAD21 EGR1 ESR1 CTBP1 ESRRA SMC3 MBD2 NCOA3 ASIC2 AA06 lnc-MYO1D-8 SPACA3
GH17J033507 Enhancer 0.8 Ensembl 0.3 +26.6 26590 0.7 PKNOX1 HDAC1 SOX6 FOXJ2 TCF12 EP300 ZNF766 CTBP1 NFE2 HES1 lnc-MYO1D-8 AA06 SPACA3 ASIC2
GH17J033521 Enhancer 0.5 ENCODE 0.4 +11.8 11833 0.1 CTCF REST YY1 ZNF143 RAD21 AA06 lnc-MYO1D-8 SPACA3 ASIC2
GH17J033529 Enhancer 0.3 Ensembl 0.7 +3.8 3759 0.4 MNT AA06 lnc-MYO1D-8 ASIC2 SPACA3
GH17J033493 Enhancer 0.3 Ensembl 0.3 +40.0 39960 0.4 ZNF407 lnc-MYO1D-8 AA06 ASIC2 SPACA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AA06 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AA06 Gene

Genomic Locations for AA06 Gene
chr17:33,529,787-33,533,760
(GRCh38/hg38)
Size:
3,974 bases
Orientation:
Minus strand
chr17:31,856,806-31,860,779
(GRCh37/hg19)
Size:
3,974 bases
Orientation:
Minus strand

Genomic View for AA06 Gene

Genes around AA06 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AA06 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AA06 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AA06 Gene

Proteins for AA06 Gene

No data available for DME Specific Peptides for AA06 Gene

Domains & Families for AA06 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AA06 Gene

Function for AA06 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AA06 Gene

Localization for AA06 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AA06 Gene

Pathways & Interactions for AA06 Gene

PathCards logo

SuperPathways for AA06 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AA06 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AA06 Gene

Drugs & Compounds for AA06 Gene

No Compound Related Data Available

Transcripts for AA06 Gene

mRNA/cDNA for AA06 Gene

4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 RNACentral transcripts :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AA06 Gene

No ASD Table

Relevant External Links for AA06 Gene

GeneLoc Exon Structure for
AA06

Expression for AA06 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AA06 Gene

mRNA differential expression in normal tissues according to GTEx for AA06 Gene

This gene is overexpressed in Testis (x51.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for AA06

SOURCE GeneReport for Unigene cluster for AA06 Gene:

Hs.652571
genes like me logo Genes that share expression patterns with AA06: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AA06 Gene

Orthologs for AA06 Gene

Evolution for AA06 Gene

ENSEMBL:
Gene Tree for AA06 (if available)
TreeFam:
Gene Tree for AA06 (if available)

No data available for Orthologs for AA06 Gene

Paralogs for AA06 Gene

No data available for Paralogs for AA06 Gene

Variants for AA06 Gene

Structural Variations from Database of Genomic Variants (DGV) for AA06 Gene

Variant ID Type Subtype PubMed ID
nsv510706 CNV deletion 20534489
nsv521841 CNV loss 19592680
nsv833421 CNV gain 17160897
nsv9539 CNV loss 18304495

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for AA06 Gene

Disorders for AA06 Gene

No disorders were found for AA06 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AA06 Gene

Publications for AA06 Gene

  1. Localization of the 17q breakpoint of a constitutional 1;17 translocation in a patient with neuroblastoma within a 25-kb segment located between the ACCN1 and TLK2 genes and near the distal breakpoints of two microdeletions in neurofibromatosis type 1 patients. (PMID: 12203774) Van Roy N … Speleman F (Genes, chromosomes & cancer 2002) 3

No data available for Mastermind for AA06 Gene

Products for AA06 Gene

Sources for AA06 Gene