Aliases for AA06 Gene

Aliases for AA06 Gene

  • Uncharacterized LOC100506677 3
  • Novel Transcript, Sense Intronic ASIC2 5
  • HSALNG0115830 169
  • NONHSAG021500 94
  • Lnc-MYO1D-3 170
  • AC011824.3 5
  • AA02 3
  • AA04 3
  • AA05 3

External Ids for AA06 Gene

Previous GeneCards Identifiers for AA06 Gene

  • GC17M031856

Summaries for AA06 Gene

GeneCards Summary for AA06 Gene

AA06 (Uncharacterized LOC100506677) is a Pseudogene.

Additional gene information for AA06 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AA06 Gene

Genomics for AA06 Gene

GeneHancer (GH) Regulatory Elements for AA06 Gene

Promoters and enhancers for AA06 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J033519 Enhancer 0.8 Ensembl ENCODE 0.4 +13.1 13112 2.2 CTCF GATA3 SREBF1 ZNF217 RAD21 NCOA3 EGR1 REST CTBP1 ESRRA ASIC2 AA06 lnc-MYO1D-8
GH17J033507 Enhancer 0.7 Ensembl 0.3 +26.6 26590 0.7 SMARCE1 DACH1 TEAD4 MLLT1 CBFA2T2 SMARCA4 PKNOX1 HDAC1 EP300 NFE2 lnc-MYO1D-8 AA06 ASIC2
GH17J033529 Enhancer 0.3 Ensembl 0.6 +3.8 3759 0.4 MNT AA06 lnc-MYO1D-8 ASIC2
GH17J033521 Enhancer 0.4 ENCODE 0.4 +11.8 11833 0.1 CTCF REST ZNF143 AA06 lnc-MYO1D-8 ASIC2
GH17J033493 Enhancer 0.3 Ensembl 0.3 +40.0 39960 0.4 ZNF407 TLK2P1 lnc-MYO1D-8 AA06 ASIC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AA06 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AA06 Gene

Genomic Locations for AA06 Gene
chr17:33,529,787-33,533,760
(GRCh38/hg38)
Size:
3,974 bases
Orientation:
Minus strand
chr17:31,856,806-31,860,779
(GRCh37/hg19)
Size:
3,974 bases
Orientation:
Minus strand

Genomic View for AA06 Gene

Genes around AA06 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AA06 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AA06 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AA06 Gene

Proteins for AA06 Gene

No data available for DME Specific Peptides for AA06 Gene

Domains & Families for AA06 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AA06 Gene

Function for AA06 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AA06 Gene

Localization for AA06 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AA06 Gene

Pathways & Interactions for AA06 Gene

PathCards logo

SuperPathways for AA06 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AA06 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AA06 Gene

Drugs & Compounds for AA06 Gene

No Compound Related Data Available

Transcripts for AA06 Gene

mRNA/cDNA for AA06 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LncBook transcripts :
(1) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AA06 Gene

No ASD Table

Relevant External Links for AA06 Gene

GeneLoc Exon Structure for
AA06

Expression for AA06 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AA06 Gene

mRNA differential expression in normal tissues according to GTEx for AA06 Gene

This gene is overexpressed in Testis (x51.7).

SOURCE GeneReport for Unigene cluster for AA06 Gene:

Hs.652571
genes like me logo Genes that share expression patterns with AA06: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AA06 Gene

Orthologs for AA06 Gene

Evolution for AA06 Gene

ENSEMBL:
Gene Tree for AA06 (if available)
TreeFam:
Gene Tree for AA06 (if available)

No data available for Orthologs for AA06 Gene

Paralogs for AA06 Gene

No data available for Paralogs for AA06 Gene

Variants for AA06 Gene

Sequence variations from dbSNP and Humsavar for AA06 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000060415 -- 33,534,981(-) T/G upstream_transcript_variant
rs1000667568 -- 33,533,789(-) T/C upstream_transcript_variant
rs1000737061 -- 33,532,361(-) A/G intron_variant
rs1001394396 -- 33,534,018(-) A/G upstream_transcript_variant
rs1001994166 -- 33,532,680(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for AA06 Gene

Variant ID Type Subtype PubMed ID
nsv510706 CNV deletion 20534489
nsv521841 CNV loss 19592680
nsv833421 CNV gain 17160897
nsv9539 CNV loss 18304495

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for AA06 Gene

Disorders for AA06 Gene

No disorders were found for AA06 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AA06 Gene

Publications for AA06 Gene

  1. Localization of the 17q breakpoint of a constitutional 1;17 translocation in a patient with neuroblastoma within a 25-kb segment located between the ACCN1 and TLK2 genes and near the distal breakpoints of two microdeletions in neurofibromatosis type 1 patients. (PMID: 12203774) Van Roy N … Speleman F (Genes, chromosomes & cancer 2002) 3 56

No data available for External Links for AA06 Gene

Products for AA06 Gene

Sources for AA06 Gene