Aliases for A2M-AS1 Gene

Subcategory (RNA class) for A2M-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for A2M-AS1 Gene

  • A2M Antisense RNA 1 2 3 5
  • A2M Antisense RNA 1 (Non-Protein Coding) 2 3
  • A2M Antisense RNA 1 (Head To Head) 3
  • HSALNG0089113 167
  • NONHSAG010430 92
  • Lnc-KLRG1-9 168
  • A2M-AS1 2

External Ids for A2M-AS1 Gene

Previous GeneCards Identifiers for A2M-AS1 Gene

  • GC12P009218

Summaries for A2M-AS1 Gene

GeneCards Summary for A2M-AS1 Gene

A2M-AS1 (A2M Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with A2M-AS1 include Gastric Cancer.

Additional gene information for A2M-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for A2M-AS1 Gene

Genomics for A2M-AS1 Gene

GeneHancer (GH) Regulatory Elements for A2M-AS1 Gene

Promoters and enhancers for A2M-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J009063 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas 512.1 -0.4 -354 2.4 CTCF POLR2G PHF8 TEAD4 ZFX ZIC2 POLR2A ZBTB10 CLOCK ZBTB26 A2M-AS1 LINC00612 A2M ENSG00000111788 DDX12P M6PR ENSG00000213443 KRT17P8 BTG1P1 ENSG00000255753
GH12J008695 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 5.3 -365.4 -365373 7.6 HNRNPK NRF1 USF1 PHF8 TEAD4 ZFX ZNF10 POLR2A ZBTB10 CLOCK RIMKLB LINC02367 ENSG00000214776 ENSG00000256673 A2M-AS1 HE855925
GH12J009072 Enhancer 0.6 ENCODE 12.7 +8.0 8003 1.3 POLR2G FOXA2 RBM22 JUND POLR2A SSRP1 RAD21 RXRA MAX HNF4A lnc-PZP-8 A2M-AS1 A2M RF00017-1085
GH12J009167 Promoter/Enhancer 0.9 EPDnew Ensembl ENCODE 6.3 +103.8 103842 4.4 NR2F2 POLR2A RBBP5 PZP A2M BTG1P1 KRT17P8 KLRB1 DDX12P A2M-AS1 KLRG1 ENSG00000111788 piR-41457
GH12J009050 Enhancer 0.4 Ensembl 11.7 -14.0 -13958 1.2 SPI1 GABPA POLR2A A2M-AS1 LINC00612 VDAC2P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around A2M-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for A2M-AS1 Gene

Genomic Locations for A2M-AS1 Gene
chr12:9,065,159-9,068,689
(GRCh38/hg38)
Size:
3,531 bases
Orientation:
Plus strand
chr12:9,217,773-9,220,651
(GRCh37/hg19)
Size:
2,879 bases
Orientation:
Plus strand

Genomic View for A2M-AS1 Gene

Genes around A2M-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
A2M-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for A2M-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for A2M-AS1 Gene

Proteins for A2M-AS1 Gene

Post-translational modifications for A2M-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for A2M-AS1 Gene

Domains & Families for A2M-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for A2M-AS1 Gene

Function for A2M-AS1 Gene

Phenotypes From GWAS Catalog for A2M-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for A2M-AS1 Gene

Localization for A2M-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for A2M-AS1 Gene

Pathways & Interactions for A2M-AS1 Gene

PathCards logo

SuperPathways for A2M-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for A2M-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for A2M-AS1 Gene

Drugs & Compounds for A2M-AS1 Gene

No Compound Related Data Available

Transcripts for A2M-AS1 Gene

mRNA/cDNA for A2M-AS1 Gene

14 RNACentral transcripts :
3 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
7 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for A2M-AS1 Gene

No ASD Table

Relevant External Links for A2M-AS1 Gene

GeneLoc Exon Structure for
A2M-AS1

Expression for A2M-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for A2M-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for A2M-AS1 Gene

This gene is overexpressed in Liver (x5.3) and Lung (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for A2M-AS1

SOURCE GeneReport for Unigene cluster for A2M-AS1 Gene:

Hs.592432
genes like me logo Genes that share expression patterns with A2M-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for A2M-AS1 Gene

Orthologs for A2M-AS1 Gene

Evolution for A2M-AS1 Gene

ENSEMBL:
Gene Tree for A2M-AS1 (if available)
TreeFam:
Gene Tree for A2M-AS1 (if available)

No data available for Orthologs for A2M-AS1 Gene

Paralogs for A2M-AS1 Gene

No data available for Paralogs for A2M-AS1 Gene

Variants for A2M-AS1 Gene

Additional dbSNP identifiers (rs#s) for A2M-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for A2M-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1051530 CNV gain 25217958
nsv832327 CNV loss 17160897

Additional Variant Information for A2M-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
A2M-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for A2M-AS1 Gene

Disorders for A2M-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for A2M-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for A2M-AS1

genes like me logo Genes that share disorders with A2M-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for A2M-AS1 Gene

Publications for A2M-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for A2M-AS1 Gene

Sources for A2M-AS1 Gene