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Aliases for A2M-AS1 Gene

Subcategory (RNA class) for A2M-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for A2M-AS1 Gene

  • A2M Antisense RNA 1 (Head To Head) 2 3 5
  • A2M Antisense RNA 1 (Non-Protein Coding) 2
  • A2M Antisense RNA 1 2

External Ids for A2M-AS1 Gene

Previous GeneCards Identifiers for A2M-AS1 Gene

  • GC12P009218

Summaries for A2M-AS1 Gene

GeneCards Summary for A2M-AS1 Gene

A2M-AS1 (A2M Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for A2M-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for A2M-AS1 Gene

Genomics for A2M-AS1 Gene

GeneHancer (GH) Regulatory Elements for A2M-AS1 Gene

Promoters and enhancers for A2M-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I009063 Promoter/Enhancer 1.4 Ensembl ENCODE 562.2 -0.4 -425 2.3 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 GLIS2 PAF1 RXRA A2M-AS1 LINC00612 A2M KRT17P8 BTG1P1 VDAC2P2
GH12I008695 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 5.3 -366.9 -366896 4.6 PKNOX1 ATF1 ARNT SIN3A GLI4 ZNF2 BRCA1 POLR2B GLIS2 ZNF213 RIMKLB A2M-AS1 RPSAP51
GH12I009072 Enhancer 0.6 ENCODE 12.7 +8.0 7985 1.3 PAF1 FOXA2 RXRA MAX RAD21 YY1 SSRP1 JUND POLR2A ATF3 A2M-AS1 A2M GC12M009066
GH12I009110 Enhancer 0.4 FANTOM5 6.2 +45.6 45551 0.4 HLF CEBPA A2M-AS1 KLRG1 KLRB1 A2M GC12M009066
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around A2M-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for A2M-AS1 Gene

Genomic Locations for A2M-AS1 Gene
chr12:9,065,177-9,068,060
(GRCh38/hg38)
Size:
2,884 bases
Orientation:
Plus strand
chr12:9,217,773-9,220,651
(GRCh37/hg19)

Genomic View for A2M-AS1 Gene

Genes around A2M-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
A2M-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for A2M-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for A2M-AS1 Gene

Proteins for A2M-AS1 Gene

Post-translational modifications for A2M-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for A2M-AS1 Gene

Domains & Families for A2M-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for A2M-AS1 Gene

Function for A2M-AS1 Gene

Phenotypes From GWAS Catalog for A2M-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for A2M-AS1 Gene

Localization for A2M-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for A2M-AS1 Gene

Pathways & Interactions for A2M-AS1 Gene

SuperPathways for A2M-AS1 Gene

No Data Available

Interacting Proteins for A2M-AS1 Gene

Gene Ontology (GO) - Biological Process for A2M-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for A2M-AS1 Gene

Drugs & Compounds for A2M-AS1 Gene

No Compound Related Data Available

Transcripts for A2M-AS1 Gene

mRNA/cDNA for A2M-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for A2M-AS1 Gene

A2M antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for A2M-AS1 Gene

No ASD Table

Relevant External Links for A2M-AS1 Gene

GeneLoc Exon Structure for
A2M-AS1
ECgene alternative splicing isoforms for
A2M-AS1

Expression for A2M-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for A2M-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for A2M-AS1 Gene

This gene is overexpressed in Liver (x5.3) and Lung (x5.1).

SOURCE GeneReport for Unigene cluster for A2M-AS1 Gene:

Hs.592432
genes like me logo Genes that share expression patterns with A2M-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for A2M-AS1 Gene

Orthologs for A2M-AS1 Gene

Evolution for A2M-AS1 Gene

ENSEMBL:
Gene Tree for A2M-AS1 (if available)
TreeFam:
Gene Tree for A2M-AS1 (if available)

No data available for Orthologs for A2M-AS1 Gene

Paralogs for A2M-AS1 Gene

No data available for Paralogs for A2M-AS1 Gene

Variants for A2M-AS1 Gene

Sequence variations from dbSNP and Humsavar for A2M-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000212841 -- 9,066,247(+) T/C non_coding_transcript_variant
rs1000476709 -- 9,066,387(+) G/C non_coding_transcript_variant
rs1000477784 -- 9,067,649(+) A/ non_coding_transcript_variant
rs1001617861 -- 9,066,975(+) C/T non_coding_transcript_variant
rs1001751772 -- 9,066,265(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for A2M-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1051530 CNV gain 25217958
nsv832327 CNV loss 17160897

Additional Variant Information for A2M-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
A2M-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for A2M-AS1 Gene

Disorders for A2M-AS1 Gene

Additional Disease Information for A2M-AS1

No disorders were found for A2M-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for A2M-AS1 Gene

Publications for A2M-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for A2M-AS1 Gene

Sources for A2M-AS1 Gene

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