Aliases for A2M-AS1 Gene

Subcategory (RNA class) for A2M-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for A2M-AS1 Gene

  • A2M Antisense RNA 1 2 3 5
  • A2M Antisense RNA 1 (Non-Protein Coding) 2 3
  • A2M-AS1 2 5
  • A2M Antisense RNA 1 (Head To Head) 3
  • NONHSAG010430.2 91
  • HSALNG0089113 164
  • Lnc-KLRG1-9 165

External Ids for A2M-AS1 Gene

Previous GeneCards Identifiers for A2M-AS1 Gene

  • GC12P009218

Summaries for A2M-AS1 Gene

GeneCards Summary for A2M-AS1 Gene

A2M-AS1 (A2M Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with A2M-AS1 include Gastric Cancer.

Additional gene information for A2M-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for A2M-AS1 Gene

Genomics for A2M-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for A2M-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J009063 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 612.1 -0.4 -354 2.4 HNRNPL CREB1 CTCF TEAD4 TFE3 ZNF692 ZIC2 RBFOX2 POLR2A PATZ1 A2M-AS1 LINC00612 A2M KRT17P8 BTG1P1 VDAC2P2 KLRG1
GH12J008695 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 5.3 -365.4 -365373 7.6 BRCA1 TEAD4 PRDM10 RFX1 IKZF1 ZNF692 PRDM1 MTA2 ZSCAN4 PKNOX1 RIMKLB LINC02367 ENSG00000214776 ENSG00000256673 A2M-AS1 HE855925 MN309535 A2ML1
GH12J009072 Enhancer 0.6 ENCODE 12.7 +8.0 8003 1.3 REST RBFOX2 SP1 FOXA2 YY1 RBM22 JUND POLR2A RAD21 SSRP1 lnc-PZP-8 A2M-AS1 A2M RF00017-1085 KLRG1
GH12J009167 Promoter/Enhancer 0.8 EPDnew Ensembl ENCODE 6.3 +103.8 103842 4.4 NR2F2 PZP A2M BTG1P1 KRT17P8 KLRB1 DDX12P A2M-AS1 KLRG1 ENSG00000111788 piR-41457
GH12J009050 Enhancer 0.4 Ensembl 11.7 -14.0 -13958 1.2 SPI1 GABPA POLR2A A2M-AS1 LINC00612 VDAC2P2 A2M KLRG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around A2M-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for A2M-AS1 Gene

Genomic Locations for A2M-AS1 Gene
chr12:9,065,159-9,068,689
(GRCh38/hg38)
Size:
3,531 bases
Orientation:
Plus strand
chr12:9,217,773-9,220,651
(GRCh37/hg19)
Size:
2,879 bases
Orientation:
Plus strand

Genomic View for A2M-AS1 Gene

Genes around A2M-AS1 on UCSC Golden Path with GeneCards custom track
A2M-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
A2M-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for A2M-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for A2M-AS1 Gene

Proteins for A2M-AS1 Gene

Post-translational modifications for A2M-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for A2M-AS1 Gene

Domains & Families for A2M-AS1 Gene

Gene Families for A2M-AS1 Gene

genes like me logo Genes that share domains with A2M-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for A2M-AS1 Gene

Function for A2M-AS1 Gene

Phenotypes From GWAS Catalog for A2M-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for A2M-AS1 Gene

Localization for A2M-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for A2M-AS1 Gene

Pathways & Interactions for A2M-AS1 Gene

PathCards logo

SuperPathways for A2M-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for A2M-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for A2M-AS1 Gene

Drugs & Compounds for A2M-AS1 Gene

No Compound Related Data Available

Transcripts for A2M-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for A2M-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001F234A_9606 lncRNA 2187 4

HGNC: 27057,

RefSeq: NR_026971,

LncBook: HSALNT0185352,

NONCODE: NONHSAT026383.2,

URS00007680D3_9606 lncRNA 2192 2

Ensembl: ENST00000499762 (view in UCSC) ,

LncBook: HSALNT0185353,

URS0000EEBDE8_9606 lncRNA 2930 1

Ensembl: ENST00000667950 (view in UCSC) ,

URS0000EF160E_9606 lncRNA 2910 1

Ensembl: ENST00000670582 (view in UCSC) ,

URS0000A7685D_9606 lncRNA 2300 1

RefSeq: NR_137424,

A2M-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for A2M-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for A2M-AS1 Gene

No ASD Table

Relevant External Links for A2M-AS1 Gene

GeneLoc Exon Structure for
A2M-AS1

Expression for A2M-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for A2M-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for A2M-AS1 Gene

This gene is overexpressed in Liver (x5.3) and Lung (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for A2M-AS1

SOURCE GeneReport for Unigene cluster for A2M-AS1 Gene:

Hs.592432
genes like me logo Genes that share expression patterns with A2M-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for A2M-AS1 Gene

Orthologs for A2M-AS1 Gene

Evolution for A2M-AS1 Gene

ENSEMBL:
Gene Tree for A2M-AS1 (if available)
TreeFam:
Gene Tree for A2M-AS1 (if available)

No data available for Orthologs for A2M-AS1 Gene

Paralogs for A2M-AS1 Gene

No data available for Paralogs for A2M-AS1 Gene

Variants for A2M-AS1 Gene

Additional dbSNP identifiers (rs#s) for A2M-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for A2M-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1051530 CNV gain 25217958
nsv832327 CNV loss 17160897

Additional Variant Information for A2M-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
A2M-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for A2M-AS1 Gene

Disorders for A2M-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for A2M-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with A2M-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for A2M-AS1 Gene

Publications for A2M-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for A2M-AS1 Gene

Sources for A2M-AS1 Gene