Aliases for A1BG-AS1 Gene

Subcategory (RNA class) for A1BG-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for A1BG-AS1 Gene

  • A1BG Antisense RNA 1 2 3 5
  • A1BG-AS1 2 5 165
  • A1BG Antisense RNA 1 (Non-Protein Coding) 2 3
  • A1BG Antisense RNA (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 181 2
  • NONHSAG026719.2 91
  • HSALNG0127948 164
  • NCRNA00181 3
  • FLJ23569 2
  • A1BG-AS 3
  • A1BGAS 3

External Ids for A1BG-AS1 Gene

Previous HGNC Symbols for A1BG-AS1 Gene

  • NCRNA00181
  • A1BGAS
  • A1BG-AS

Previous GeneCards Identifiers for A1BG-AS1 Gene

  • GC19P059058
  • GC19P059072
  • GC19P059085
  • GC19P059104
  • GC19P059146
  • GC19P059203
  • GC19P058860

Summaries for A1BG-AS1 Gene

GeneCards Summary for A1BG-AS1 Gene

A1BG-AS1 (A1BG Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for A1BG-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for A1BG-AS1 Gene

Genomics for A1BG-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for A1BG-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J058346 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 600.7 +0.5 498 2.6 SP1 IKZF1 ZNF692 POLR2A BACH1 LARP7 ZNF143 ZIC2 RBFOX2 PKNOX1 A1BG A1BG-AS1 ZNF324 ZNF446 RNU6-1337P ENSG00000279611 ENSG00000268230 ZSCAN22
GH19J058345 Promoter 0.6 Ensembl 600.7 -1.3 -1302 0.2 ATF7 ZBTB17 ATF2 ATF3 A1BG-AS1 ZNF446 RNU6-1337P A1BG piR-38452 ZSCAN22
GH19J057487 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 3.9 -859.1 -859102 2.6 SP1 CREB1 TFE3 SIX5 IKZF1 NFKBIZ POLR2A FOS LARP7 GABPA ZNF419 ENSG00000268107 VN1R1 ZNF773 ZNF550 ZNF544 A1BG-AS1
GH19J058353 Promoter 0.9 EPDnew 0.4 +6.3 6280 0.1 GATAD2A RBFOX2 RXRB SP1 GABPA SOX13 TAF1 TCF7 YY1 ZNF205 A1BG ENSG00000279611 A1BG-AS1 ENSG00000268230 ZSCAN22
GH19J058350 Promoter 0.3 Ensembl 0.7 +3.1 3098 0.2 ENSG00000279611 A1BG A1BG-AS1 ENSG00000268230 ZSCAN22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around A1BG-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for A1BG-AS1 Gene

Genomic Locations for A1BG-AS1 Gene
chr19:58,347,203-58,355,509
(GRCh38/hg38)
Size:
8,307 bases
Orientation:
Plus strand
chr19:58,859,117-58,866,549
(GRCh37/hg19)
Size:
7,433 bases
Orientation:
Plus strand

Genomic View for A1BG-AS1 Gene

Genes around A1BG-AS1 on UCSC Golden Path with GeneCards custom track
A1BG-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
A1BG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for A1BG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for A1BG-AS1 Gene

Proteins for A1BG-AS1 Gene

Post-translational modifications for A1BG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for A1BG-AS1 Gene

Domains & Families for A1BG-AS1 Gene

Gene Families for A1BG-AS1 Gene

genes like me logo Genes that share domains with A1BG-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for A1BG-AS1 Gene

Function for A1BG-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for A1BG-AS1 Gene

Localization for A1BG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for A1BG-AS1 Gene

Pathways & Interactions for A1BG-AS1 Gene

PathCards logo

SuperPathways for A1BG-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for A1BG-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for A1BG-AS1 Gene

Drugs & Compounds for A1BG-AS1 Gene

No Compound Related Data Available

Transcripts for A1BG-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for A1BG-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000342A17_9606 lncRNA 1056 4

Ensembl: ENST00000600686 (view in UCSC) ,

LncBook: HSALNT0263082,

LNCipedia: A1BG-AS1:9,

NONCODE: NONHSAT068373.2,

URS0000292851_9606 lncRNA 712 3

Ensembl: ENST00000600379 (view in UCSC) ,

LncBook: HSALNT0263081,

NONCODE: NONHSAT068372.2,

URS000014F49C_9606 lncRNA 559 3

Ensembl: ENST00000599728 (view in UCSC) ,

LncBook: HSALNT0263073,

NONCODE: NONHSAT068371.2,

URS000002D602_9606 lncRNA 2130 2

Ensembl: ENST00000595302 (view in UCSC) ,

NONCODE: NONHSAT068374.2,

URS00007E4F6E_9606 lncRNA 2130 2

HGNC: 37133,

RefSeq: NR_015380,

A1BG-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for A1BG-AS1 Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for A1BG-AS1 Gene

No ASD Table

Relevant External Links for A1BG-AS1 Gene

GeneLoc Exon Structure for
A1BG-AS1

Expression for A1BG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for A1BG-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for A1BG-AS1

SOURCE GeneReport for Unigene cluster for A1BG-AS1 Gene:

Hs.709582
genes like me logo Genes that share expression patterns with A1BG-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for A1BG-AS1 Gene

Orthologs for A1BG-AS1 Gene

Evolution for A1BG-AS1 Gene

ENSEMBL:
Gene Tree for A1BG-AS1 (if available)
TreeFam:
Gene Tree for A1BG-AS1 (if available)

No data available for Orthologs for A1BG-AS1 Gene

Paralogs for A1BG-AS1 Gene

No data available for Paralogs for A1BG-AS1 Gene

Variants for A1BG-AS1 Gene

Additional dbSNP identifiers (rs#s) for A1BG-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for A1BG-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv515731 CNV gain+loss 19592680
nsv817878 CNV loss 17921354
nsv833887 CNV loss 17160897
nsv833888 CNV loss 17160897

Additional Variant Information for A1BG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
A1BG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for A1BG-AS1 Gene

Disorders for A1BG-AS1 Gene

No disorders were found for A1BG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for A1BG-AS1 Gene

Publications for A1BG-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for A1BG-AS1 Gene

Sources for A1BG-AS1 Gene