Free for academic non-profit institutions. Other users need a Commercial license

Aliases for A1BG-AS1 Gene

Subcategory (RNA class) for A1BG-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for A1BG-AS1 Gene

  • A1BG Antisense RNA 1 2 3 5
  • A1BG Antisense RNA 1 (Non-Protein Coding) 2 3
  • A1BG Antisense RNA (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 181 2
  • NCRNA00181 3
  • A1BG-AS 3
  • A1BGAS 3

External Ids for A1BG-AS1 Gene

Previous HGNC Symbols for A1BG-AS1 Gene

  • NCRNA00181
  • A1BGAS
  • A1BG-AS

Previous GeneCards Identifiers for A1BG-AS1 Gene

  • GC19P059058
  • GC19P059072
  • GC19P059085
  • GC19P059104
  • GC19P059146
  • GC19P059203
  • GC19P058860

Summaries for A1BG-AS1 Gene

GeneCards Summary for A1BG-AS1 Gene

A1BG-AS1 (A1BG Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for A1BG-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for A1BG-AS1 Gene

Genomics for A1BG-AS1 Gene

GeneHancer (GH) Regulatory Elements for A1BG-AS1 Gene

Promoters and enhancers for A1BG-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J058346 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 650.7 -0.2 -176 1.7 HDGF PKNOX1 ATF1 SIN3A ZNF2 GLIS2 ZNF207 ZNF143 ATF7 SP3 A1BG A1BG-AS1 TRIM28 ZNF548 ZNF417 ZNF274 ZNF446 ZNF134 ZSCAN22 RPS5
GH19J057487 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 3.9 -859.7 -859707 1.9 HDGF PKNOX1 ATF1 ARID4B SIN3A YBX1 ZNF48 YY1 ETS1 ELK1 ZNF419 ENSG00000268107 GC19P057489 VN1R1 ZNF264 ZNF773 ZNF543 ZNF805 ZNF550 ZNF544
GH19J058353 Promoter 1.1 EPDnew 0.4 +5.7 5732 0.1 ELF3 FOXA2 DMAP1 RAD21 RARA YY1 EGR1 CREM THAP11 RXRA A1BG ENSG00000279611 A1BG-AS1 ENSG00000268230
GH19J058339 Enhancer 0.5 ENCODE 0.4 -8.4 -8411 0.1 CTCF MEIS2 PKNOX1 ZNF143 ZBTB33 PIR61497 ZBTB45 ZNF324B ZNF446 RNU6-1337P A1BG-AS1 ZSCAN22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around A1BG-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for A1BG-AS1 Gene

Genomic Locations for A1BG-AS1 Gene
chr19:58,347,751-58,355,183
(GRCh38/hg38)
Size:
7,433 bases
Orientation:
Plus strand
chr19:58,859,117-58,866,549
(GRCh37/hg19)
Size:
7,433 bases
Orientation:
Plus strand

Genomic View for A1BG-AS1 Gene

Genes around A1BG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
A1BG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for A1BG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for A1BG-AS1 Gene

Function for A1BG-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for A1BG-AS1 Gene

Localization for A1BG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for A1BG-AS1 Gene

Pathways & Interactions for A1BG-AS1 Gene

SuperPathways for A1BG-AS1 Gene

No Data Available

Interacting Proteins for A1BG-AS1 Gene

Gene Ontology (GO) - Biological Process for A1BG-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for A1BG-AS1 Gene

Drugs & Compounds for A1BG-AS1 Gene

No Compound Related Data Available

Transcripts for A1BG-AS1 Gene

mRNA/cDNA for A1BG-AS1 Gene

(6) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Unigene Clusters for A1BG-AS1 Gene

A1BG antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for A1BG-AS1 Gene

No ASD Table

Relevant External Links for A1BG-AS1 Gene

GeneLoc Exon Structure for
A1BG-AS1
ECgene alternative splicing isoforms for
A1BG-AS1

Expression for A1BG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for A1BG-AS1 Gene

SOURCE GeneReport for Unigene cluster for A1BG-AS1 Gene:

Hs.709582
genes like me logo Genes that share expression patterns with A1BG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for A1BG-AS1 Gene

Orthologs for A1BG-AS1 Gene

Evolution for A1BG-AS1 Gene

ENSEMBL:
Gene Tree for A1BG-AS1 (if available)
TreeFam:
Gene Tree for A1BG-AS1 (if available)

No data available for Orthologs for A1BG-AS1 Gene

Paralogs for A1BG-AS1 Gene

No data available for Paralogs for A1BG-AS1 Gene

Variants for A1BG-AS1 Gene

Sequence variations from dbSNP and Humsavar for A1BG-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000277711 -- 58,351,766(+) G/A upstream_transcript_variant
rs1001334782 -- 58,353,284(+) G/C intron_variant
rs1001651855 -- 58,350,697(+) C/T upstream_transcript_variant
rs1003820585 -- 58,354,663(+) C/T non_coding_transcript_variant
rs1003942142 -- 58,351,733(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for A1BG-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv515731 CNV gain+loss 19592680
nsv817878 CNV loss 17921354
nsv833887 CNV loss 17160897
nsv833888 CNV loss 17160897

Additional Variant Information for A1BG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
A1BG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for A1BG-AS1 Gene

Disorders for A1BG-AS1 Gene

Additional Disease Information for A1BG-AS1

No disorders were found for A1BG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for A1BG-AS1 Gene

Publications for A1BG-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for A1BG-AS1 Gene

Sources for A1BG-AS1 Gene

Content
Loading form....