Our Publications and Presentations

• Stelzer G, Inger A, Olender T, Iny Stein T, Dalah I, Harel A, Safran M and Lancet D. GeneDecks: paralog hunting and gene-set distillation with GeneCards annotation OMICS, 2009, 13(6)

• Harel A, Inger A, Stelzer G, Strichman-Almashanu L, Dalah I, Safran M and Lancet D. GIFtS: annotation landscape analysis with GeneCards BMC Bioinformatics 2009, 10:348 [PDF]

• Stelzer G, Harel A, Inger A, Olender T, Dalah I, Shmoish M, Ron S, Safran M and Lancet D. GeneDecks: GeneCards-based paralog hunting and gene set distillation. CSB2008 Aug, 2008

• Lancet D, Safran M, Olender T, Dalah I, Iny-Stein T, Inger A, Harel A and Stelzer G. GeneCards tools for combinatorial annotation and dissemination of human genome information GIACS Conference on Data in Complex Systems April, 2008

• Stelzer G, Harel A, Dalah A, Rosen N, Shmoish M, Iny Stein T, Sirota A, Madi A, Safran M and Lancet D. GeneCards: One stop site for human gene research FISEB (ILANIT), Jan, 2008

• Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli G A, and Bicciato S. Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinformatics 2007, 8:446 (15 NOV 2007). [PDF]

• Safran M, Dalah I, Ron S, Shmoish M, Iny-Stein T, Rosen N, Madi A, Sirota A, Stelzer G and Lancet D. GeneDecks annotation combinatorics and unification for human genes. ISMB ECCB 2007 [PDF]

• Ron S, Strichman-Almashanu L, Shmoish M, Greenshpan O, Sirota A, Madi A, Iny-Stein T, Rosen N, Dalah I, Shmueli O, Safran M, Aumann Y, and Lancet D. GeneDecks: Gene-Set Analyses of GeneCards Annotations. ECCB 2006.

• Lancet D, Ron S, Shmoish M, Madi A, Sirota A, Noy K, Rosen N, Greenshpan O, Shmueli O, Safran M, Aumann Y, and Strichman-Almashanu L. GeneDecks: A Systems Biology Facilitator with Combinatorial GeneCards Display. Transcriptome 2005. [PDF]

• Ron S, Strichman-Almashanu L, Shmoish M, Madi A, Sirota A, Noy K, Rosen N, Shmueli O, Safran M, and Lancet D. GeneDecks: A Systems Biology Facilitator With Combinatorial GeneCards Outlook. Poster and abstract at ISMB 2005. [PDF]

• Shklar M, Strichman-Almashanu L, Shmueli O, Shmoish M, Safran M, and Lancet D. GeneTide--Terra Incognita Discovery Endeavor: a new transcriptome focused member of the GeneCards/GeneNote suite of databases. Nucleic Acids Res. 33: D556 - D561 (2005). [PDF]

• Yanai I, Benjamin H, Shmoish M, Chalifa-Caspi V, Shklar M, Ophir R, Bar-Even A, Horn-Saban S, Safran M, Domany E, Lancet D, Shmueli O. Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 21, 5: 650-659 (2005). [PDF]

• Shklar, M., Shmueli, O., Strichman-Almashanu, L., Shmoish, M., Iny-Stein, T., Safran, M. and Lancet, D. TIDE--Terra Incognita Discovery Endeavor: Comprehensive EST assignment to GeneCards genes. Short paper and talk at ISMB/ECCB 2004. [PDF]

• Chalifa-Caspi, V., Yanai, I., Ophir, R., Rosen, N., Shmoish, M., Benjamin-Rodrig, H., Iny Stein, T., Shmueli, O., Safran, M. and Lancet, D. GeneAnnot: comprehensive two-way linking between oligonucleotide array probesets and GeneCards genes. Bioinformatics 20, 9: 1457-1458 (2004).[PDF]

• Chalifa-Caspi, V., Shmueli, O., Benjamin-Rodrig, H., Rosen, N., Shmoish, M., Yanai, I., Ophir, R., Kats, P., Safran, M. and Lancet, D. GeneAnnot: Interfacing GeneCards with high throughput gene expression compendia. Briefings in Bioinformatics 4, 4: 349-360 (2003). [PDF]

• Safran, M., Chalifa-Caspi, V., Shmueli, O., Rosen, N., Benjamin-Rodrig, H., Ophir, R., Yanai, I., Shmoish, M., and Lancet, D. The GeneCards Family of Databases: GeneCards, GeneLoc, GeneNote and GeneAnnot. Proceedings of the IEEE Computer Science Bioinformatics Conference CSB2003, (2003) (Poster Abstract at CSB2003).

• Shmueli, O., Horn-Saban, S., Chalifa-Caspi, V., Shmoish, M., Ophir, R., Benjamin-Rodrig, H., Safran, M., Domany, E., and Lancet, D. GeneNote: whole genome expression profiles in normal human tissues. Comptes Rendus Biologies: 326, 10-11:1067-1072 (2003).[PDF]

• Chalifa-Caspi, V., Yanai, I., Ophir, R., Shmoish,M., Benjamin-Rodrig, H., Rosen, N., Kats, P., Safran, M., Shmueli, O., and Lancet, D. GeneAnnot: Annotation of high-density oligunocleotide arrays and their linking with GeneCards. Poster Abstract at ISMB 2003

• Rosen, N., Chalifa-Caspi, V., Shmueli, O., Adato, A., Lapidot, M., Stampnitzky, J., Safran, M., and Lancet, D. GeneLoc: Exon-based integration of human genome maps. Bioinformatics: 19,S1: 222-224 (2003).[PDF]

• Safran, M., Chalifa-Caspi, V., Shmueli, O., Olender, T., Lapidot, M., Rosen, N., Shmoish, M., Peter, Y., Glusman, G., Feldmesser, E., Adato, A., Peter, I., Khen, M., Atarot, T., Groner, Y., and Lancet, D. Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE . Nucleic Acids Research 31,1:142-146 (2003).[PDF]

• Safran, M., Solomon, I., Shmueli, O., Lapidot, M., Shen-Orr, S., Adato, A., Ben-Dor, U., Esterman, N., Rosen, N., Peter, I., Olender, T., Chalifa-Caspi, V., and Lancet, D. GeneCards 2002: towards a complete, object-oriented, human gene compendium. Bioinformatics: 18,11: 1542-1543 (2002).[PDF]

• Safran, M., Solomon, I., Shmueli, O., Lapidot, M., Shen-Orr, S., Adato, A., Ben-Dor, U., Esterman, N., Rosen, N., Peter, I., Olender, T., Chalifa-Caspi, V., and Lancet, D. GeneCards 2002: An Evolving Human Gene Compendium. Proceedings of the IEEE Computer Science Bioinformatics Conference CSB2002, p. 339 (2002).

• Rebhan, M., Chalifa-Caspi, V., Prilusky, J., and Lancet, D. GeneCards: A novel functional genomics compendium with automated data mining and query reformulation support. Bioinformatics: 14: 656-664 (1998). [PDF]

• Rebhan, M., Prilusky, J. Rapid access to biomedical knowledge with GeneCards and HotMolecBase: Implications for the electrophoretic analysis of large sets of gene products. Electrophoresis, special issue on 'Biomedicine and Biocomputing', vol. 18: 2774-80 (1997).

• Rebhan, M., Chalifa-Caspi, V., Prilusky, J., Lancet, D. GeneCards: integrating information about genes, proteins and diseases. Trends in Genetics 13: 163 (1997). [PDF]