Our Publications and Presentations

1. Stelzer, G, Dalah, I, Iny Stein, T, Satanower, Y, Rosen, N, Nativ, N, Oz-Levi, D, Olender, T, Belinky, F, Bahir, I, Krug, H, Perco, P, Mayer, B, Kolker, E, Safran, M and Lancet, D. In-silico Human Genomics with GeneCards, Human Genomics, 2011 Oct;5(6):709-17. [PDF]
2. Harel A, Dalah I, Pietrokovski M, Safran M and Lancet D. Omics Data Management and Annotation, Chapter 3 Bioinformatics for Omics Data: Methods and Protocols Series: Methods in Molecular Biology, Vol. 719, ISBN: 978-1-61779-026-3, Mayer, Bernd (Ed.), Humana Press, March, 2011
3. Safran M, Dalah I, Alexander J, Rosen N, Iny Stein T, Shmoish M, Nativ N, Bahir I, Doniger T, Krug H, Sirota-Madi A, Olender T, Golan Y, Stelzer G, Harel A and Lancet D. GeneCards Version 3: the human gene integrator Database 2010; doi: 10.1093/database/baq020 [PDF]

4. Stelzer G, Inger A, Olender T, Iny Stein T, Dalah I, Harel A, Safran M and Lancet D. GeneDecks: paralog hunting and gene-set distillation with GeneCards annotation OMICS, 2009, 13(6)

5. Harel A, Inger A, Stelzer G, Strichman-Almashanu L, Dalah I, Safran M and Lancet D. GIFtS: annotation landscape analysis with GeneCards BMC Bioinformatics 2009, 10:348 [PDF]

6. Stelzer G, Harel A, Inger A, Olender T, Dalah I, Shmoish M, Ron S, Safran M and Lancet D. GeneDecks: GeneCards-based paralog hunting and gene set distillation. CSB2008 Aug, 2008

7. Lancet D, Safran M, Olender T, Dalah I, Iny-Stein T, Inger A, Harel A and Stelzer G. GeneCards tools for combinatorial annotation and dissemination of human genome information GIACS Conference on Data in Complex Systems April, 2008

8. Stelzer G, Harel A, Dalah A, Rosen N, Shmoish M, Iny Stein T, Sirota A, Madi A, Safran M and Lancet D. GeneCards: One stop site for human gene research FISEB (ILANIT), Jan, 2008

9. Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli G A, and Bicciato S. Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinformatics 2007, 8:446 (15 NOV 2007). [PDF]

10. Safran M, Dalah I, Ron S, Shmoish M, Iny-Stein T, Rosen N, Madi A, Sirota A, Stelzer G and Lancet D. GeneDecks annotation combinatorics and unification for human genes. ISMB ECCB 2007

11. Ron S, Strichman-Almashanu L, Shmoish M, Greenshpan O, Sirota A, Madi A, Iny-Stein T, Rosen N, Dalah I, Shmueli O, Safran M, Aumann Y, and Lancet D. GeneDecks: Gene-Set Analyses of GeneCards Annotations. ECCB 2006.

12. Lancet D, Ron S, Shmoish M, Madi A, Sirota A, Noy K, Rosen N, Greenshpan O, Shmueli O, Safran M, Aumann Y, and Strichman-Almashanu L. GeneDecks: A Systems Biology Facilitator with Combinatorial GeneCards Display. Transcriptome 2005. [PDF]

13. Ron S, Strichman-Almashanu L, Shmoish M, Madi A, Sirota A, Noy K, Rosen N, Shmueli O, Safran M, and Lancet D. GeneDecks: A Systems Biology Facilitator With Combinatorial GeneCards Outlook. Poster and abstract at ISMB 2005. [PDF]

14. Shklar M, Strichman-Almashanu L, Shmueli O, Shmoish M, Safran M, and Lancet D. GeneTide--Terra Incognita Discovery Endeavor: a new transcriptome focused member of the GeneCards/GeneNote suite of databases. Nucleic Acids Res. 33: D556 - D561 (2005). [PDF]

15. Yanai I, Benjamin H, Shmoish M, Chalifa-Caspi V, Shklar M, Ophir R, Bar-Even A, Horn-Saban S, Safran M, Domany E, Lancet D, Shmueli O. Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 21, 5: 650-659 (2005). [PDF]

16. Shklar, M., Shmueli, O., Strichman-Almashanu, L., Shmoish, M., Iny-Stein, T., Safran, M. and Lancet, D. TIDE--Terra Incognita Discovery Endeavor: Comprehensive EST assignment to GeneCards genes. Short paper and talk at ISMB/ECCB 2004. [PDF]

17. Chalifa-Caspi, V., Yanai, I., Ophir, R., Rosen, N., Shmoish, M., Benjamin-Rodrig, H., Iny Stein, T., Shmueli, O., Safran, M. and Lancet, D. GeneAnnot: comprehensive two-way linking between oligonucleotide array probesets and GeneCards genes. Bioinformatics 20, 9: 1457-1458 (2004).[PDF]

18. Chalifa-Caspi, V., Shmueli, O., Benjamin-Rodrig, H., Rosen, N., Shmoish, M., Yanai, I., Ophir, R., Kats, P., Safran, M. and Lancet, D. GeneAnnot: Interfacing GeneCards with high throughput gene expression compendia. Briefings in Bioinformatics 4, 4: 349-360 (2003). [PDF]

19. Safran, M., Chalifa-Caspi, V., Shmueli, O., Rosen, N., Benjamin-Rodrig, H., Ophir, R., Yanai, I., Shmoish, M., and Lancet, D. The GeneCards Family of Databases: GeneCards, GeneLoc, GeneNote and GeneAnnot. Proceedings of the IEEE Computer Science Bioinformatics Conference CSB2003, (2003) (Poster Abstract at CSB2003).

20. Shmueli, O., Horn-Saban, S., Chalifa-Caspi, V., Shmoish, M., Ophir, R., Benjamin-Rodrig, H., Safran, M., Domany, E., and Lancet, D. GeneNote: whole genome expression profiles in normal human tissues. Comptes Rendus Biologies: 326, 10-11:1067-1072 (2003).[PDF]

21. Chalifa-Caspi, V., Yanai, I., Ophir, R., Shmoish,M., Benjamin-Rodrig, H., Rosen, N., Kats, P., Safran, M., Shmueli, O., and Lancet, D. GeneAnnot: Annotation of high-density oligunocleotide arrays and their linking with GeneCards. Poster Abstract at ISMB 2003

22. Rosen, N., Chalifa-Caspi, V., Shmueli, O., Adato, A., Lapidot, M., Stampnitzky, J., Safran, M., and Lancet, D. GeneLoc: Exon-based integration of human genome maps. Bioinformatics: 19,S1: 222-224 (2003).[PDF]

23. Safran, M., Chalifa-Caspi, V., Shmueli, O., Olender, T., Lapidot, M., Rosen, N., Shmoish, M., Peter, Y., Glusman, G., Feldmesser, E., Adato, A., Peter, I., Khen, M., Atarot, T., Groner, Y., and Lancet, D. Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE . Nucleic Acids Research 31,1:142-146 (2003).[PDF]

24. Safran, M., Solomon, I., Shmueli, O., Lapidot, M., Shen-Orr, S., Adato, A., Ben-Dor, U., Esterman, N., Rosen, N., Peter, I., Olender, T., Chalifa-Caspi, V., and Lancet, D. GeneCards 2002: towards a complete, object-oriented, human gene compendium. Bioinformatics: 18,11: 1542-1543 (2002).[PDF]

25. Safran, M., Solomon, I., Shmueli, O., Lapidot, M., Shen-Orr, S., Adato, A., Ben-Dor, U., Esterman, N., Rosen, N., Peter, I., Olender, T., Chalifa-Caspi, V., and Lancet, D. GeneCards 2002: An Evolving Human Gene Compendium. Proceedings of the IEEE Computer Science Bioinformatics Conference CSB2002, p. 339 (2002).

26. Rebhan, M., Chalifa-Caspi, V., Prilusky, J., and Lancet, D. GeneCards: A novel functional genomics compendium with automated data mining and query reformulation support. Bioinformatics: 14: 656-664 (1998). [PDF]

27. Rebhan, M., Prilusky, J. Rapid access to biomedical knowledge with GeneCards and HotMolecBase: Implications for the electrophoretic analysis of large sets of gene products. Electrophoresis, special issue on 'Biomedicine and Biocomputing', vol. 18: 2774-80 (1997).

28. Rebhan, M., Chalifa-Caspi, V., Prilusky, J., Lancet, D. GeneCards: integrating information about genes, proteins and diseases. Trends in Genetics 13: 163 (1997). [PDF]