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Aliases for SORD Gene

Aliases for SORD Gene

  • Sorbitol Dehydrogenase 2 3
  • L-Iditol 2-Dehydrogenase 3 4
  • EC 1.1.1.14 4 63
  • SORD1 3 6
  • Epididymis Secretory Sperm Binding Protein Li 95n 3
  • HEL-S-95n 3
  • EC 1.1.1 63

External Ids for SORD Gene

Summaries for SORD Gene

Entrez Gene Summary for SORD Gene

  • Sorbitol dehydrogenase (SORD; EC 1.1.1.14) catalyzes the interconversion of polyols and their corresponding ketoses, and together with aldose reductase (ALDR1; MIM 103880), makes up the sorbitol pathway that is believed to play an important role in the development of diabetic complications (summarized by Carr and Markham, 1995 [PubMed 8535074]). The first reaction of the pathway (also called the polyol pathway) is the reduction of glucose to sorbitol by ALDR1 with NADPH as the cofactor. SORD then oxidizes the sorbitol to fructose using NAD(+) cofactor.[supplied by OMIM, Jul 2010]

GeneCards Summary for SORD Gene

SORD (Sorbitol Dehydrogenase) is a Protein Coding gene. Diseases associated with SORD include acute diffuse nephritis and mature cataract. Among its related pathways are Metabolism and Fructose and mannose metabolism. GO annotations related to this gene include carbohydrate binding and L-iditol 2-dehydrogenase activity.

UniProtKB/Swiss-Prot for SORD Gene

  • Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Gene Wiki entry for SORD Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SORD Gene

Genomics for SORD Gene

Genomic Location for SORD Gene

Start:
45,023,104 bp from pter
End:
45,077,185 bp from pter
Size:
54,082 bases
Orientation:
Plus strand

Genomic View for SORD Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SORD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SORD Gene

Regulatory Elements for SORD Gene

Proteins for SORD Gene

  • Protein details for SORD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q00796-DHSO_HUMAN
    Recommended name:
    Sorbitol dehydrogenase
    Protein Accession:
    Q00796
    Secondary Accessions:
    • B2R655
    • B7Z3A6
    • J3JZZ5
    • Q16682
    • Q9UMD6

    Protein attributes for SORD Gene

    Size:
    357 amino acids
    Molecular mass:
    38325 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Note=Binds 1 zinc ion per subunit.;
    Quaternary structure:
    • Homotetramer.
    Miscellaneous:
    • The polyol pathway is proposed to be involved the cellular toxicity of diabetic hyperglycemia

    Three dimensional structures from OCA and Proteopedia for SORD Gene

    Alternative splice isoforms for SORD Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SORD Gene

Proteomics data for SORD Gene at MOPED

Selected DME Specific Peptides for SORD Gene

Post-translational modifications for SORD Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys107 and Lys134

Other Protein References for SORD Gene

Domains for SORD Gene

Suggested Antigen Peptide Sequences for SORD Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q00796

UniProtKB/Swiss-Prot:

DHSO_HUMAN
Family:
  • Belongs to the zinc-containing alcohol dehydrogenase family.:
    • Q00796
genes like me logo Genes that share domains with SORD: view

No data available for Gene Families for SORD Gene

Function for SORD Gene

Molecular function for SORD Gene

GENATLAS Biochemistry: sorbitol dehydrogenase,including two homologous genes SORD1,SORD2 resulting of a recent gene duplication event
UniProtKB/Swiss-Prot CatalyticActivity: L-iditol + NAD(+) = L-sorbose + NADH
UniProtKB/Swiss-Prot Function: Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.
UniProtKB/Swiss-Prot Induction: Up-regulated by androgens and down-regulated by castration.

Enzyme Numbers (IUBMB) for SORD Gene

Gene Ontology (GO) - Molecular Function for SORD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003939 L-iditol 2-dehydrogenase activity ISS --
GO:0008270 zinc ion binding ISS --
GO:0016491 oxidoreductase activity --
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups --
GO:0030246 carbohydrate binding NAS 12962626
genes like me logo Genes that share ontologies with SORD: view
genes like me logo Genes that share phenotypes with SORD: view

miRNA for SORD Gene

miRTarBase miRNAs that target SORD

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for SORD Gene

Localization for SORD Gene

Subcellular locations from UniProtKB/Swiss-Prot for SORD Gene

Mitochondrion membrane; Peripheral membrane protein. Cell projection, cilium, flagellum. Note=Associated with mitochondria of the midpiece and near the plasma membrane in the principal piece of the flagellum. Also found in the epididymosome, secreted by the epididymal epithelium and that transfers proteins from the epididymal fluid to the sperm surface. {ECO:0000250 UniProtKB:Q64442}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SORD Gene COMPARTMENTS Subcellular localization image for SORD gene
Compartment Confidence
extracellular 5
mitochondrion 5
cytosol 3
nucleus 2
endoplasmic reticulum 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for SORD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space TAS 6177277
GO:0005739 mitochondrion --
GO:0005829 cytosol TAS --
GO:0016020 membrane IDA 8487505
GO:0031514 motile cilium ISS --
genes like me logo Genes that share ontologies with SORD: view

Pathways for SORD Gene

genes like me logo Genes that share pathways with SORD: view

Pathways by source for SORD Gene

2 BioSystems pathways for SORD Gene
2 KEGG pathways for SORD Gene

Gene Ontology (GO) - Biological Process for SORD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005975 carbohydrate metabolic process TAS --
GO:0006000 fructose metabolic process TAS --
GO:0006006 glucose metabolic process TAS 14965227
GO:0006060 sorbitol metabolic process --
GO:0006062 sorbitol catabolic process IDA 12962626
genes like me logo Genes that share ontologies with SORD: view

Compounds for SORD Gene

(13) HMDB Compounds for SORD Gene

Compound Synonyms Cas Number PubMed IDs
1-Butanol
  • 1-Butanol
71-36-3
1-Hexanol
  • 1-Hexyl alcohol
111-27-3
1-Pentanol
  • 1-Pentol
71-41-0
D-Fructose
  • Beta-d-arabino-hexulose
53188-23-1
Ethanol
  • 1-Hydroxyethane
64-17-5

(3) Drugbank Compounds for SORD Gene

(34) Novoseek inferred chemical compound relationships for SORD Gene

Compound -log(P) Hits PubMed IDs
mannitol 92.8 164
aldose 88.4 36
zopolrestat 82.1 1
glyceraldehyde 77.4 5
fructose 73.9 17
genes like me logo Genes that share compounds with SORD: view

Transcripts for SORD Gene

Unigene Clusters for SORD Gene

Sorbitol dehydrogenase:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SORD Gene

No ASD Table

Relevant External Links for SORD Gene

GeneLoc Exon Structure for
SORD
ECgene alternative splicing isoforms for
SORD

Expression for SORD Gene

mRNA expression in normal human tissues for SORD Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SORD Gene

This gene is overexpressed in Liver (10.1), Prostate (8.9), and Thyroid (7.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SORD Gene

SOURCE GeneReport for Unigene cluster for SORD Gene Hs.878

mRNA Expression by UniProt/SwissProt for SORD Gene

Q00796-DHSO_HUMAN
Tissue specificity: Expressed in kidney and epithelial cells of both benign and malignant prostate tissue. Expressed in epididymis (at protein level).
genes like me logo Genes that share expressions with SORD: view

Orthologs for SORD Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SORD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SORD 35
  • 99.07 (n)
  • 98.32 (a)
SORD 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SORD 35
  • 88.54 (n)
  • 89.01 (a)
SORD 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SORD 35
  • 86.95 (n)
  • 86.76 (a)
SORD 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sord 35
  • 81.51 (n)
  • 82.91 (a)
Sord 16
Sord 36
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SORD 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 91 (a)
OneToMany
-- 36
  • 86 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Sord 35
  • 82.63 (n)
  • 81.79 (a)
chicken
(Gallus gallus)
Aves SORD 35
  • 74.58 (n)
  • 77.68 (a)
SORD 36
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 74 (a)
OneToMany
-- 36
  • 72 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia Xl.4026 35
tropical clawed frog
(Silurana tropicalis)
Amphibia sord 35
  • 72.49 (n)
  • 79.15 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC570613 35
  • 69.24 (n)
  • 77.14 (a)
sord 36
  • 76 (a)
OneToOne
zgc63674 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003584 35
  • 58.45 (n)
  • 58.36 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4836 36
  • 8 (a)
OneToMany
Sodh-1 35
  • 60.17 (n)
  • 56.16 (a)
Sodh-1 36
  • 54 (a)
OneToMany
Sodh-2 36
  • 54 (a)
OneToMany
Sodh-1 37
  • 55 (a)
Sodh-2 37
  • 55 (a)
CG4836 37
  • 28 (a)
worm
(Caenorhabditis elegans)
Secernentea CELE_R04B5.5 35
  • 54.13 (n)
  • 53.64 (a)
R04B5.5 36
  • 53 (a)
OneToMany
R04B5.6 36
  • 50 (a)
OneToMany
R04B5.5 37
  • 53 (a)
R04B5.6 37
  • 50 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ABR229C 35
  • 50.72 (n)
  • 43.56 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SOR1 35
  • 49 (n)
  • 43.98 (a)
SOR1 36
  • 41 (a)
OneToMany
SOR2 36
  • 41 (a)
OneToMany
XYL2 36
  • 40 (a)
OneToMany
XYL2 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D05511g 35
  • 48.51 (n)
  • 42.77 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G51970 35
  • 52.79 (n)
  • 46.92 (a)
rice
(Oryza sativa)
Liliopsida Os08g0545200 35
  • 50.43 (n)
  • 46.7 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU00891 35
  • 51.81 (n)
  • 43.99 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes tms1 35
  • 47.36 (n)
  • 40.3 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.15386 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 47 (a)
OneToOne
Species with no ortholog for SORD:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SORD Gene

ENSEMBL:
Gene Tree for SORD (if available)
TreeFam:
Gene Tree for SORD (if available)

Paralogs for SORD Gene

Selected SIMAP similar genes for SORD Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for SORD Gene

genes like me logo Genes that share paralogs with SORD: view

No data available for Paralogs for SORD Gene

Variants for SORD Gene

Sequence variations from dbSNP and Humsavar for SORD Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs172021 -- 45,027,790(-) CTTCT(A/G)TGGGG intron-variant
rs175224 -- 45,027,821(-) AGCTT(C/T)CCACC intron-variant
rs270818 -- 45,035,464(-) ccccc(A/C)gatta intron-variant
rs270819 -- 45,030,561(-) GTGTT(C/T)GGGTC intron-variant
rs270820 -- 45,028,851(-) AAAGT(A/G)TAGAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SORD Gene

Variant ID Type Subtype PubMed ID
dgv744e1 CNV Complex 17122850
dgv745e1 CNV Complex 17122850
nsv7264 OTHER Inversion 18451855
nsv436698 OTHER Inversion 17901297
nsv509570 CNV Insertion 20534489
nsv9259 CNV Gain 18304495
dgv435n67 CNV Gain 20364138
nsv827318 CNV Gain 20364138
nsv820141 CNV Gain 19587683
esv27178 CNV Gain 19812545
nsv9260 CNV Loss 18304495
nsv1519 CNV Insertion 18451855
nsv9261 CNV Loss 18304495
esv28190 CNV Loss 19812545

Relevant External Links for SORD Gene

HapMap Linkage Disequilibrium report
SORD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SORD Gene

Disorders for SORD Gene

(6) Novoseek inferred disease relationships for SORD Gene

Disease -log(P) Hits PubMed IDs
congenital cataract 47.5 3
cataract 39.3 3
hyperglycemia 25.4 1
diabetic retinopathy 20.9 1
diabetes mellitus 4.78 2

Relevant External Links for SORD

Genetic Association Database (GAD)
SORD
Human Genome Epidemiology (HuGE) Navigator
SORD
genes like me logo Genes that share disorders with SORD: view

No data available for UniProtKB/Swiss-Prot for SORD Gene

Publications for SORD Gene

  1. Structural organization of the human sorbitol dehydrogenase gene (SORD). (PMID: 7782086) Iwata T. … Carper D. (Genomics 1995) 2 3 4 23
  2. The human sorbitol dehydrogenase gene: cDNA cloning, sequence determination, and mapping by fluorescence in situ hybridization. (PMID: 8088829) Lee F.K. … Chung S. (Genomics 1994) 3 4 23
  3. Identification and characterisation of a sequence related to human sorbitol dehydrogenase. (PMID: 9183016) Carr I.M. … Coletta P.L. (Eur. J. Biochem. 1997) 3 4 23
  4. Polyol pathway in human epididymis and semen. (PMID: 16278369) Frenette G. … Sullivan R. (J. Androl. 2006) 3 4 23
  5. Sorbitol dehydrogenase expression is regulated by androgens in the human prostate. (PMID: 20372835) Szabo Z. … Vaarala M.H. (Oncol. Rep. 2010) 3 4 23

Products for SORD Gene

Sources for SORD Gene

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