Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VPS9D1 Gene

Aliases for VPS9D1 Gene

  • VPS9 Domain Containing 1 2 3 5
  • C16orf7 3 4
  • Chromosome 16 Open Reading Frame 7 2
  • Protein ATP-BL 4
  • ATP-BL 3
  • ATPBL 4

External Ids for VPS9D1 Gene

Previous HGNC Symbols for VPS9D1 Gene

  • C16orf7

Previous GeneCards Identifiers for VPS9D1 Gene

  • GC16M089774

Summaries for VPS9D1 Gene

GeneCards Summary for VPS9D1 Gene

VPS9D1 (VPS9 Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include GTPase activator activity and transporter activity.

Gene Wiki entry for VPS9D1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS9D1 Gene

Genomics for VPS9D1 Gene

Regulatory Elements for VPS9D1 Gene

Enhancers for VPS9D1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around VPS9D1 on UCSC Golden Path with GeneCards custom track

Promoters for VPS9D1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around VPS9D1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VPS9D1 Gene

89,707,133 bp from pter
89,721,272 bp from pter
14,140 bases
Minus strand

Genomic View for VPS9D1 Gene

Genes around VPS9D1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VPS9D1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VPS9D1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS9D1 Gene

Proteins for VPS9D1 Gene

  • Protein details for VPS9D1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    VPS9 domain-containing protein 1
    Protein Accession:

    Protein attributes for VPS9D1 Gene

    631 amino acids
    Molecular mass:
    68956 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA76711.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

    Alternative splice isoforms for VPS9D1 Gene


neXtProt entry for VPS9D1 Gene

Proteomics data for VPS9D1 Gene at MOPED

Post-translational modifications for VPS9D1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for VPS9D1 Gene

No data available for DME Specific Peptides for VPS9D1 Gene

Domains & Families for VPS9D1 Gene

Gene Families for VPS9D1 Gene

Protein Domains for VPS9D1 Gene

Suggested Antigen Peptide Sequences for VPS9D1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 VPS9 domain.
  • Contains 1 VPS9 domain.
genes like me logo Genes that share domains with VPS9D1: view

Function for VPS9D1 Gene

genes like me logo Genes that share phenotypes with VPS9D1: view

Animal Model Products

CRISPR Products

miRNA for VPS9D1 Gene

miRTarBase miRNAs that target VPS9D1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for VPS9D1 Gene

Localization for VPS9D1 Gene

Subcellular locations from

Jensen Localization Image for VPS9D1 Gene COMPARTMENTS Subcellular localization image for VPS9D1 gene
Compartment Confidence
cytosol 3
nucleus 3
endosome 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for VPS9D1 Gene

Pathways & Interactions for VPS9D1 Gene

SuperPathways for VPS9D1 Gene

No Data Available

Interacting Proteins for VPS9D1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: Q9Y2B5-VP9D1_HUMAN ENSP00000374037 for VPS9D1 Gene via MINT STRING I2D

Gene Ontology (GO) - Biological Process for VPS9D1 Gene


No data available for Pathways by source and SIGNOR curated interactions for VPS9D1 Gene

Drugs & Compounds for VPS9D1 Gene

No Compound Related Data Available

Transcripts for VPS9D1 Gene

Unigene Clusters for VPS9D1 Gene

VPS9 domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VPS9D1 Gene

No ASD Table

Relevant External Links for VPS9D1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for VPS9D1 Gene

mRNA expression in normal human tissues for VPS9D1 Gene

mRNA differential expression in normal tissues according to GTEx for VPS9D1 Gene

This gene is overexpressed in Whole Blood (x7.3).

Protein differential expression in normal tissues from HIPED for VPS9D1 Gene

This gene is overexpressed in Fetal Brain (31.4), Frontal cortex (26.7), and Retina (10.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for VPS9D1 Gene

SOURCE GeneReport for Unigene cluster for VPS9D1 Gene Hs.164410

mRNA Expression by UniProt/SwissProt for VPS9D1 Gene

Tissue specificity: Ubiquitous.
genes like me logo Genes that share expression patterns with VPS9D1: view

Protein tissue co-expression partners for VPS9D1 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for VPS9D1 Gene

Orthologs for VPS9D1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for VPS9D1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia VPS9D1 35
  • 83.64 (n)
  • 85.17 (a)
VPS9D1 36
  • 82 (a)
(Canis familiaris)
Mammalia VPS9D1 35
  • 82.78 (n)
  • 84.42 (a)
VPS9D1 36
  • 78 (a)
(Mus musculus)
Mammalia Vps9d1 35
  • 81.34 (n)
  • 84.05 (a)
Vps9d1 16
Vps9d1 36
  • 81 (a)
(Pan troglodytes)
Mammalia VPS9D1 35
  • 92.25 (n)
  • 90.26 (a)
VPS9D1 36
  • 99 (a)
(Rattus norvegicus)
Mammalia Vps9d1 35
  • 80.96 (n)
  • 83.04 (a)
(Monodelphis domestica)
Mammalia VPS9D1 36
  • 70 (a)
(Ornithorhynchus anatinus)
Mammalia VPS9D1 36
  • 69 (a)
(Gallus gallus)
Aves C11H16ORF7 35
  • 68.5 (n)
  • 65.98 (a)
VPS9D1 36
  • 61 (a)
(Anolis carolinensis)
Reptilia VPS9D1 36
  • 64 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.15453 35
vps9d1 35
  • 58.08 (n)
  • 56.69 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.29400 35
(Danio rerio)
Actinopterygii idibd5127 35
vps9d1 35
  • 60 (n)
  • 57.52 (a)
vps9d1 36
  • 52 (a)
Species with no ortholog for VPS9D1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VPS9D1 Gene

Gene Tree for VPS9D1 (if available)
Gene Tree for VPS9D1 (if available)

Paralogs for VPS9D1 Gene

No data available for Paralogs for VPS9D1 Gene

Variants for VPS9D1 Gene

Sequence variations from dbSNP and Humsavar for VPS9D1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs60990888 -- 89,709,133(+) CGGCA(C/G/T)GTGAC intron-variant
rs745710 -- 89,706,752(+) CTTCT(A/G)TGCAC downstream-variant-500B
rs61747704 -- 89,707,880(+) CTCCC(C/T)GGGGC nc-transcript-variant, reference, missense, utr-variant-3-prime
rs891107 -- 89,707,268(-) CCCTT(A/G)CTCAC nc-transcript-variant, utr-variant-3-prime
rs1110331 -- 89,707,988(-) TCGTT(C/T)AGATG intron-variant

Variation tolerance for VPS9D1 Gene

Residual Variation Intolerance Score: 58.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.07; 50.73% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for VPS9D1 Gene

Disorders for VPS9D1 Gene

Relevant External Links for VPS9D1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for VPS9D1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VPS9D1 Gene

Publications for VPS9D1 Gene

  1. Isolation and mapping of putative b subunit of human ATPase (ATP-BL) from human leukocytes. (PMID: 10231027) Sugimoto J. … Isobe M. (DNA Res. 1999) 2 3 4 67
  2. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  3. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  4. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy K.W. … Pang C.P. (Physiol. Genomics 2006) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for VPS9D1 Gene

Sources for VPS9D1 Gene