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Aliases for ATP5J2 Gene

Aliases for ATP5J2 Gene

  • ATP Synthase, H+ Transporting, Mitochondrial Fo Complex, Subunit F2 2 3
  • F1Fo-ATP Synthase Complex Fo Membrane Domain F Subunit 2 3
  • F1Fo-ATPase Synthase F Subunit 2 3
  • ATP5JL 3 4
  • ATP Synthase, H+ Transporting, Mitochondrial F0 Complex, Subunit F, Isoform 2 2
  • ATP Synthase, H+ Transporting, Mitochondrial F0 Complex, Subunit F2 2
  • ATP Synthase, H+ Transporting, Mitochondrial F0 Complex, Subunit F 3
  • ATP Synthase Subunit F, Mitochondrial 3
  • ATP Synthase F Chain, Mitochondrial 3
  • F1F0-Type ATPase Subunit F 3
  • ATP Synthase F Chain 2
  • Mitochondrial 2

External Ids for ATP5J2 Gene

Previous GeneCards Identifiers for ATP5J2 Gene

  • GC07M097590
  • GC07M098653
  • GC07M098667
  • GC07M098700
  • GC07M098893
  • GC07M099046
  • GC07M093692

Summaries for ATP5J2 Gene

Entrez Gene Summary for ATP5J2 Gene

  • Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. It is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, which comprises the proton channel. The catalytic portion of mitochondrial ATP synthase consists of five different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and single representatives of the gamma, delta, and epsilon subunits. The proton channel likely has nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the f subunit of the Fo complex. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. This gene has multiple pseudogenes. Naturally occurring read-through transcription also exists between this gene and the downstream pentatricopeptide repeat domain 1 (PTCD1) gene. [provided by RefSeq, Nov 2010]

GeneCards Summary for ATP5J2 Gene

ATP5J2 (ATP Synthase, H+ Transporting, Mitochondrial Fo Complex, Subunit F2) is a Protein Coding gene. Among its related pathways are Metabolism and Metabolism. GO annotations related to this gene include ATPase activity and transmembrane transporter activity.

UniProtKB/Swiss-Prot for ATP5J2 Gene

  • Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane

Gene Wiki entry for ATP5J2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP5J2 Gene

Genomics for ATP5J2 Gene

Regulatory Elements for ATP5J2 Gene

Genomic Location for ATP5J2 Gene

Start:
99,448,475 bp from pter
End:
99,466,331 bp from pter
Size:
17,857 bases
Orientation:
Minus strand

Genomic View for ATP5J2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ATP5J2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP5J2 Gene

Proteins for ATP5J2 Gene

  • Protein details for ATP5J2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P56134-ATPK_HUMAN
    Recommended name:
    ATP synthase subunit f, mitochondrial
    Protein Accession:
    P56134
    Secondary Accessions:
    • C9J8H9
    • F8W7V3
    • O76079
    • Q6IBB3
    • Q96L83
    • Q9BTI8

    Protein attributes for ATP5J2 Gene

    Size:
    94 amino acids
    Molecular mass:
    10918 Da
    Quaternary structure:
    • F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(0) seems to have nine subunits: a, b, c, d, e, f, g, F6 and 8 (or A6L). Component of an ATP synthase complex composed of ATP5F1, ATP5G1, ATP5E, ATP5H, ATP5I, ATP5J, ATP5J2, MT-ATP6, MT-ATP8, ATP5A1, ATP5B, ATP5D, ATP5C1, ATP5O, ATP5L, USMG5 and MP68 (By similarity).

    Alternative splice isoforms for ATP5J2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ATP5J2 Gene

Proteomics data for ATP5J2 Gene at MOPED

Post-translational modifications for ATP5J2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ATP5J2 Gene

No data available for DME Specific Peptides for ATP5J2 Gene

Domains for ATP5J2 Gene

Gene Families for ATP5J2 Gene

HGNC:
  • F1ATP :ATPases / F-type
  • FATP :Mitochondrial respiratory chain complex / Complex V
IUPHAR :

Protein Domains for ATP5J2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ATP5J2 Gene

Graphical View of Domain Structure for InterPro Entry

P56134

UniProtKB/Swiss-Prot:

ATPK_HUMAN :
  • P56134
Family:
  • Belongs to the ATPase F chain family.
genes like me logo Genes that share domains with ATP5J2: view

Function for ATP5J2 Gene

Molecular function for ATP5J2 Gene

GENATLAS Biochemistry: ATP synthase H+ transporting,inner mitochondrial membrane (F0 segment),subunit F6,isoform 2,complex V of oxidative phosphorylation (OXPHOS)
UniProtKB/Swiss-Prot Function: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane

Gene Ontology (GO) - Molecular Function for ATP5J2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016887 contributes_to ATPase activity IDA 12110673
GO:0022857 transmembrane transporter activity IC 12110673
genes like me logo Genes that share ontologies with ATP5J2: view

miRNA for ATP5J2 Gene

miRTarBase miRNAs that target ATP5J2

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ATP5J2 Gene

Localization for ATP5J2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ATP5J2 Gene

Mitochondrion. Mitochondrion inner membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ATP5J2 Gene COMPARTMENTS Subcellular localization image for ATP5J2 gene
Compartment Confidence
mitochondrion 5
cytosol 2
peroxisome 2
extracellular 1
golgi apparatus 1
nucleus 1

Gene Ontology (GO) - Cellular Components for ATP5J2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005739 mitochondrion --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005753 mitochondrial proton-transporting ATP synthase complex NAS 11959398
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ATP5J2: view

Pathways for ATP5J2 Gene

genes like me logo Genes that share pathways with ATP5J2: view

Gene Ontology (GO) - Biological Process for ATP5J2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006200 obsolete ATP catabolic process --
GO:0015992 proton transport NAS 11959398
GO:0022904 respiratory electron transport chain TAS --
GO:0042776 mitochondrial ATP synthesis coupled proton transport TAS --
GO:0044237 cellular metabolic process TAS --
genes like me logo Genes that share ontologies with ATP5J2: view

Compounds for ATP5J2 Gene

(4) HMDB Compounds for ATP5J2 Gene

Compound Synonyms Cas Number PubMed IDs
Adenosine triphosphate
  • 5'-(tetrahydrogen triphosphate) Adenosine
56-65-5
ADP
  • adenosindiphosphorsaeure
58-64-0
Phosphate
  • NFB Orthophosphate
14265-44-2
Water
  • Dihydrogen oxide
7732-18-5
genes like me logo Genes that share compounds with ATP5J2: view

Transcripts for ATP5J2 Gene

Unigene Clusters for ATP5J2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ATP5J2 Gene

No ASD Table

Relevant External Links for ATP5J2 Gene

GeneLoc Exon Structure for
ATP5J2
ECgene alternative splicing isoforms for
ATP5J2

Expression for ATP5J2 Gene

mRNA expression in normal human tissues for ATP5J2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ATP5J2 Gene

SOURCE GeneReport for Unigene cluster for ATP5J2 Gene Hs.521056

genes like me logo Genes that share expressions with ATP5J2: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ATP5J2 Gene

Orthologs for ATP5J2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ATP5J2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ATP5J2 35
  • 80.68 (n)
  • 81.82 (a)
ATP5J2 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 36
  • 78 (a)
OneToMany
-- 36
  • 80 (a)
OneToMany
-- 36
  • 69 (a)
OneToMany
-- 36
  • 72 (a)
OneToMany
-- 36
  • 76 (a)
OneToMany
LOC102151856 35
  • 80.23 (n)
  • 81.4 (a)
mouse
(Mus musculus)
Mammalia Atp5j2 35
  • 80.56 (n)
  • 80.95 (a)
Atp5j2 16
Atp5j2 36
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ATP5J2 36
  • 56 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ATP5J2 36
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Atp5j2 35
  • 80.56 (n)
  • 80.95 (a)
chicken
(Gallus gallus)
Aves ATP5J2 35
  • 70.2 (n)
  • 69.41 (a)
ATP5J2 36
  • 48 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia atp5j2 35
  • 61.18 (n)
  • 52.94 (a)
zebrafish
(Danio rerio)
Actinopterygii ATP5J2 36
  • 8 (a)
OneToOne
LOC402883 35
  • 64.02 (n)
  • 54.55 (a)
Species with no ortholog for ATP5J2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ATP5J2 Gene

ENSEMBL:
Gene Tree for ATP5J2 (if available)
TreeFam:
Gene Tree for ATP5J2 (if available)

Paralogs for ATP5J2 Gene

Selected SIMAP similar genes for ATP5J2 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with ATP5J2: view

No data available for Paralogs for ATP5J2 Gene

Variants for ATP5J2 Gene

Structural Variations from Database of Genomic Variants (DGV) for ATP5J2 Gene

Variant ID Type Subtype PubMed ID
nsv831069 CNV Loss 17160897

Relevant External Links for ATP5J2 Gene

HapMap Linkage Disequilibrium report
ATP5J2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for ATP5J2 Gene

Disorders for ATP5J2 Gene

Relevant External Links for ATP5J2

Genetic Association Database (GAD)
ATP5J2
Human Genome Epidemiology (HuGE) Navigator
ATP5J2
genes like me logo Genes that share disorders with ATP5J2: view

No data available for UniProtKB/Swiss-Prot for ATP5J2 Gene

Publications for ATP5J2 Gene

  1. Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full- length cDNA cloning. (PMID: 9653160) Mao M. … Chen Z. (Proc. Natl. Acad. Sci. U.S.A. 1998) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Polymorphisms in mitochondrial genes and prostate cancer risk. (PMID: 19064571) Wang L. … Thibodeau S.N. (Cancer Epidemiol. Biomarkers Prev. 2008) 3 48
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 48
  5. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4

Products for ATP5J2 Gene

Sources for ATP5J2 Gene

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