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Aliases for ITM2A Gene

Aliases for ITM2A Gene

  • Integral Membrane Protein 2A 2 3 5
  • BRICHOS Domain Containing 2A 2 3
  • Protein E25 4
  • BRICD2A 3
  • E25A 3

External Ids for ITM2A Gene

Previous GeneCards Identifiers for ITM2A Gene

  • GC0XM074161
  • GC0XM075577
  • GC0XM076657
  • GC0XM077371
  • GC0XM078422
  • GC0XM078615
  • GC0XM072195

Summaries for ITM2A Gene

Entrez Gene Summary for ITM2A Gene

  • This gene encodes a type II membrane protein that belongs to the ITM2 family. Studies in mouse suggest that it may be involved in osteo- and chondrogenic differentiation. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2010]

GeneCards Summary for ITM2A Gene

ITM2A (Integral Membrane Protein 2A) is a Protein Coding gene. An important paralog of this gene is ITM2B.

Gene Wiki entry for ITM2A Gene

Additional gene information for ITM2A Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITM2A Gene

Genomics for ITM2A Gene

Regulatory Elements for ITM2A Gene

Enhancers for ITM2A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH079142 1.7 FANTOM5 Ensembl ENCODE dbSUPER 15.9 +217.0 216951 15.5 TBL1XR1 MAX YBX1 BATF RELA POLR2A ZNF366 EED SCRT2 ATF7 ITM2A P2RY10 GPR174 RTL3 LPAR4 GC0XM079072
GH0XH079106 1.6 FANTOM5 Ensembl ENCODE dbSUPER 15.1 +259.3 259253 3.8 TBL1XR1 RELA ATF7 RUNX3 IKZF2 CREM SMARCA5 ZNF687 NR2F1 JUNB ITM2A GPR174 P2RY10 LPAR4 GC0XM079072
GH0XH078942 1.6 FANTOM5 Ensembl ENCODE dbSUPER 13.8 +420.8 420794 8.9 PKNOX1 TBL1XR1 MAX SIN3A EBF1 BATF RELA RFX5 POLR2A EED ITM2A TAF9B P2RY10 GC0XM078915
GH0XH079257 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +108.3 108284 4.7 PKNOX1 TBL1XR1 RB1 BMI1 YBX1 BATF ZNF207 ATF7 ETV6 RUNX3 GPR174 ITM2A RTL3 P2RY10 GC0XM079265 GC0XM079197
GH0XH079159 1.2 Ensembl ENCODE dbSUPER 13.7 +203.4 203415 9 PKNOX1 CBFB JUNB EBF1 DPF2 BATF TARDBP IKZF1 NBN MLLT1 ITM2A RTL3 LPAR4 GPR174 GC0XM079072
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ITM2A on UCSC Golden Path with GeneCards custom track

Promoters for ITM2A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000247389 1066 2400 HDAC1 PKNOX1 ATF1 TCF12 GATA2 EGR1 ATF7 CREM ZBTB2 NCOA1

Genomic Locations for ITM2A Gene

Genomic Locations for ITM2A Gene
7,284 bases
Minus strand

Genomic View for ITM2A Gene

Genes around ITM2A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITM2A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITM2A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITM2A Gene

Proteins for ITM2A Gene

  • Protein details for ITM2A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Integral membrane protein 2A
    Protein Accession:
    Secondary Accessions:
    • B2R7X5
    • B4E062
    • Q6IBC9

    Protein attributes for ITM2A Gene

    263 amino acids
    Molecular mass:
    29741 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ITM2A Gene


neXtProt entry for ITM2A Gene

Post-translational modifications for ITM2A Gene

  • Ubiquitination at posLast=33, posLast=1414, and posLast=3737
  • Glycosylation at posLast=166166
  • Modification sites at PhosphoSitePlus

Other Protein References for ITM2A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ITM2A Gene

Domains & Families for ITM2A Gene

Gene Families for ITM2A Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for ITM2A Gene


Suggested Antigen Peptide Sequences for ITM2A Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the ITM2 family.
  • Belongs to the ITM2 family.
genes like me logo Genes that share domains with ITM2A: view

Function for ITM2A Gene

Molecular function for ITM2A Gene

GENATLAS Biochemistry:
integral membrane protein,type 2,involved in osteo and chondrogenic differentiation,involved in transcriptional regulation of cartilage or bone specific gene

Phenotypes From GWAS Catalog for ITM2A Gene

Gene Ontology (GO) - Molecular Function for ITM2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001540 beta-amyloid binding IBA --
GO:0005515 protein binding IPI 15983050
genes like me logo Genes that share ontologies with ITM2A: view
genes like me logo Genes that share phenotypes with ITM2A: view

Animal Models for ITM2A Gene

MGI Knock Outs for ITM2A:

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ITM2A Gene

Localization for ITM2A Gene

Subcellular locations from UniProtKB/Swiss-Prot for ITM2A Gene

Membrane; Single-pass type II membrane protein.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ITM2A gene
Compartment Confidence
plasma membrane 4
golgi apparatus 4
extracellular 3
cytosol 3

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for ITM2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IBA --
GO:0005886 plasma membrane IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IBA --
genes like me logo Genes that share ontologies with ITM2A: view

Pathways & Interactions for ITM2A Gene

SuperPathways for ITM2A Gene

No Data Available

Interacting Proteins for ITM2A Gene

Gene Ontology (GO) - Biological Process for ITM2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002317 plasma cell differentiation IEA --
GO:0002377 immunoglobulin production IEA --
GO:0007399 nervous system development IBA --
GO:0042985 negative regulation of amyloid precursor protein biosynthetic process IBA --
genes like me logo Genes that share ontologies with ITM2A: view

No data available for Pathways by source and SIGNOR curated interactions for ITM2A Gene

Drugs & Compounds for ITM2A Gene

No Compound Related Data Available

Transcripts for ITM2A Gene

Unigene Clusters for ITM2A Gene

Integral membrane protein 2A:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ITM2A Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e · 2f ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b
SP1: - - -
SP2: -
SP3: - - - -
SP4: - - - - -
SP5: - - - - - - - -
SP6: - - - - - -
SP7: -

Relevant External Links for ITM2A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ITM2A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITM2A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ITM2A Gene

NURSA nuclear receptor signaling pathways regulating expression of ITM2A Gene:


SOURCE GeneReport for Unigene cluster for ITM2A Gene:


Evidence on tissue expression from TISSUES for ITM2A Gene

  • Nervous system(4.9)
  • Pancreas(4.5)
  • Blood(4.4)
  • Lung(3)
  • Bone(2.2)
  • Muscle(2.2)
genes like me logo Genes that share expression patterns with ITM2A: view

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITM2A Gene

Orthologs for ITM2A Gene

This gene was present in the common ancestor of animals.

Orthologs for ITM2A Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ITM2A 33 34
  • 99.49 (n)
(Mus musculus)
Mammalia Itm2a 33 16 34
  • 89.61 (n)
(Rattus norvegicus)
Mammalia Itm2a 33
  • 88.59 (n)
(Bos Taurus)
Mammalia ITM2A 33 34
  • 87.1 (n)
(Ornithorhynchus anatinus)
Mammalia ITM2A 34
  • 60 (a)
(Monodelphis domestica)
Mammalia ITM2A 34
  • 46 (a)
(Gallus gallus)
Aves ITM2A 33 34
  • 69.72 (n)
(Anolis carolinensis)
Reptilia ITM2A 34
  • 54 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia itm2a 33
  • 62.74 (n)
Str.6142 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.24778 33
fruit fly
(Drosophila melanogaster)
Insecta CG3662 34
  • 17 (a)
(Caenorhabditis elegans)
Secernentea C25F6.7 34
  • 16 (a)
Species where no ortholog for ITM2A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for ITM2A Gene

Gene Tree for ITM2A (if available)
Gene Tree for ITM2A (if available)

Paralogs for ITM2A Gene

Paralogs for ITM2A Gene

(2) SIMAP similar genes for ITM2A Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ITM2A: view

Variants for ITM2A Gene

Sequence variations from dbSNP and Humsavar for ITM2A Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000351665 -- 79,361,666(+) CCTTC(A/C)CCCAT intron-variant
rs1000398592 -- 79,361,328(+) ACTTA(A/C)CCAGC splice-donor-variant
rs1000610725 -- 79,367,996(+) TGAGA(C/T)AGAGA upstream-variant-2KB
rs1001860265 -- 79,367,762(+) AGGCC(C/T)CCAAA upstream-variant-2KB
rs1002527820 -- 79,363,812(+) TGCAT(C/T)AAGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ITM2A Gene

Variant ID Type Subtype PubMed ID
nsv519126 CNV gain 19592680

Variation tolerance for ITM2A Gene

Residual Variation Intolerance Score: 59.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.24; 24.89% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ITM2A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ITM2A Gene

Disorders for ITM2A Gene

Relevant External Links for ITM2A

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ITM2A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITM2A Gene

Publications for ITM2A Gene

  1. Many sequence variants affecting diversity of adult human height. (PMID: 18391951) Gudbjartsson DF … Stefansson K (Nature genetics 2008) 3 45 60
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 4 60
  5. Genomic organization and chromosomal localization of the Itm2a gene. (PMID: 9892734) Pittois K … Merregaert J (Mammalian genome : official journal of the International Mammalian Genome Society 1999) 2 3 60

Products for ITM2A Gene

Sources for ITM2A Gene

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