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Aliases for TSIX Gene

Subcategory (RNA class) for TSIX Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TSIX Gene

  • TSIX Transcript, XIST Antisense RNA 2 3
  • TSIX Transcript, XIST Antisense RNA (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 13 2 3
  • XIST Antisense RNA (Non-Protein Coding) 2 3
  • X (Inactive)-Specific Transcript, Antisense (Non-Protein Coding) 3
  • X-Inactivation-Specific Transcript-Antisense 3
  • X (Inactive)-Specific Transcript, Antisense 2
  • NCRNA00013 3
  • LINC00013 3
  • XIST-AS1 3
  • XIST-AS 3
  • XISTAS 3

External Ids for TSIX Gene

ORGUL Members for TSIX Gene

Previous GeneCards Identifiers for TSIX Gene

  • GC0XU990273
  • GC0XP073013

Summaries for TSIX Gene

Entrez Gene Summary for TSIX Gene

  • In mammals, dosage compensation of genes on the X chromosome occurs by X inactivation, which is regulated in cis by the X-inactivation center (XIC) and expression of the XIST non-coding RNA. This gene expresses a non-coding antisense transcript across the 3' end of the XIST locus, and is coexpressed with XIST only from the inactive X chromosome. The mouse ortholog of this locus is required for imprinted X inactivation in extraembryonic tissues and silences Xist through modification of the chromatin structure in the Xist promoter region. In contrast, imprinted X inactivation does not occur in human extraembryonic tissues and transcripts from this locus do not repress XIST expression or affect random X chromosome inactivation in embryonic cells. This transcript is thought to be unspliced and extend over more than 30 kb, but its exact nature has not been determined. [provided by RefSeq, Jul 2008]

GeneCards Summary for TSIX Gene

TSIX (TSIX Transcript, XIST Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSIX Gene

Genomics for TSIX Gene

Regulatory Elements for TSIX Gene

Genomic Location for TSIX Gene

Start:
73,792,205 bp from pter
End:
73,829,231 bp from pter
Size:
37,027 bases
Orientation:
Plus strand

Genomic View for TSIX Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TSIX Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSIX Gene

Proteins for TSIX Gene

Post-translational modifications for TSIX Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSIX Gene

Domains for TSIX Gene

Gene Families for TSIX Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TSIX: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSIX Gene

Function for TSIX Gene

Molecular function for TSIX Gene

GENATLAS Biochemistry:
gene antisense to XIST,involved in the early steps of X-inactivation

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSIX Gene

Localization for TSIX Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TSIX Gene

Pathways for TSIX Gene

SuperPathways for TSIX Gene

No Data Available

Interacting Proteins for TSIX Gene

Gene Ontology (GO) - Biological Process for TSIX Gene

None

No data available for Pathways by source for TSIX Gene

Transcripts for TSIX Gene

mRNA/cDNA for TSIX Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TSIX Gene

No ASD Table

Relevant External Links for TSIX Gene

GeneLoc Exon Structure for
TSIX
ECgene alternative splicing isoforms for
TSIX

Expression for TSIX Gene

No Expression Related Data Available

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for TSIX Gene

Orthologs for TSIX Gene

Evolution for TSIX Gene

ENSEMBL:
Gene Tree for TSIX (if available)
TreeFam:
Gene Tree for TSIX (if available)

No data available for Orthologs for TSIX Gene

Paralogs for TSIX Gene

No data available for Paralogs for TSIX Gene

Variants for TSIX Gene

Sequence variations from dbSNP and Humsavar for TSIX Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1088592 -- 73,807,095(-) gactc(A/G)tccca nc-transcript-variant
rs1088594 -- 73,805,305(-) catca(A/G)tctca nc-transcript-variant
rs1137202 -- 73,805,876(-) agaca(C/T)tttaa nc-transcript-variant
rs5939045 -- 73,792,307(+) gacca(G/T)cgtgg nc-transcript-variant
rs6648383 -- 73,794,288(+) gaggg(A/G)aggga nc-transcript-variant

Relevant External Links for TSIX Gene

HapMap Linkage Disequilibrium report
TSIX

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TSIX Gene

Disorders for TSIX Gene

No disorders were found for TSIX Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for TSIX Gene

Publications for TSIX Gene

  1. Tsix, a gene antisense to Xist at the X-inactivation centre. (PMID: 10192391) Lee J.T. … Warshawsky D. (Nat. Genet. 1999) 2 3 23
  2. CTCF, a candidate trans-acting factor for X-inactivation choice. (PMID: 11743158) Chao W. … Lee J.T. (Science 2002) 3 23
  3. Forty years of decoding the silence in X-chromosome inactivation. (PMID: 11673405) Boumil R.M. … Lee J.T. (Hum. Mol. Genet. 2001) 23
  4. X inactivation: Tsix and Xist as yin and yang. (PMID: 11137025) Mlynarczyk S.K. … Panning B. (Curr. Biol. 2000) 23
  5. A functional role for Tsix transcription in blocking Xist RNA accumulation but not in X-chromosome choice. (PMID: 11481444) Stavropoulos N. … Lee J.T. (Proc. Natl. Acad. Sci. U.S.A. 2001) 23

Products for TSIX Gene

Sources for TSIX Gene

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