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Aliases for TBX19 Gene

Aliases for TBX19 Gene

  • T-Box 19 2 3 5
  • T-Box Factor, Pituitary 3 4
  • T-Box Protein 19 3 4
  • TBS 19 2 3
  • TPIT 3 4
  • T-Box Transcription Factor TBX19 3
  • DJ747L4.1 3
  • TBS19 3

External Ids for TBX19 Gene

Previous GeneCards Identifiers for TBX19 Gene

  • GC01P165885
  • GC01P163846
  • GC01P164892
  • GC01P165437
  • GC01P164982
  • GC01P166461
  • GC01P166516
  • GC01P139494

Summaries for TBX19 Gene

Entrez Gene Summary for TBX19 Gene

  • This gene is a member of a phylogenetically conserved family of genes that share a common DNA-binding domain, the T-box. T-box genes encode transcription factors involved in the regulation of developmental processes. Mutations in this gene were found in patients with isolated deficiency of pituitary POMC-derived ACTH, suggesting an essential role for this gene in differentiation of the pituitary POMC lineage. ACTH deficiency is characterized by adrenal insufficiency symptoms such as weight loss, lack of appetite (anorexia), weakness, nausea, vomiting, and low blood pressure. [provided by RefSeq, Jul 2008]

GeneCards Summary for TBX19 Gene

TBX19 (T-Box 19) is a Protein Coding gene. Diseases associated with TBX19 include Acth Deficiency, Isolated and Late-Onset Isolated Acth Deficiency. Among its related pathways are Corticotropin-releasing hormone signaling pathway. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity and enhancer sequence-specific DNA binding. An important paralog of this gene is TBXT.

UniProtKB/Swiss-Prot for TBX19 Gene

  • Transcriptional regulator involved in developmental processes. Can activate POMC gene expression and repress the alpha glycoprotein subunit and thyroid-stimulating hormone beta promoters.

Gene Wiki entry for TBX19 Gene

Additional gene information for TBX19 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBX19 Gene

Genomics for TBX19 Gene

GeneHancer (GH) Regulatory Elements for TBX19 Gene

Promoters and enhancers for TBX19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I168280 Promoter 0.5 EPDnew 550.8 0.0 -41 0.1 TBX19 RNU6-1310P GC01M168263 GC01M168113
GH01I168225 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 17.5 -53.9 -53933 4.2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 SLC30A9 POLR2B ZNF766 CBX5 SFT2D2 TBX19 RNU6-1310P TIPRL MPZL1 PIR32870 GC01P168246 GC01M168113
GH01I168242 Enhancer 0.7 ENCODE 19 -37.6 -37566 1.3 HDAC1 CEBPG ZIC2 ZBTB40 CTBP1 ZNF766 RUNX3 SMARCC1 CEBPB EP300 TBX19 GC01P168246 PIR32870 SFT2D2 GC01M168113
GH01I168407 Enhancer 1.1 Ensembl ENCODE 9.8 +128.0 127998 3 ATF1 KLF17 BMI1 FEZF1 BATF ZBTB40 ZNF335 ZNF366 ATF7 FOS ENSG00000283255 MIR557 TBX19 LOC101928596 ATP1B1 RCSD1 GPR161 LOC100505918 ENSG00000228697
GH01I168300 Enhancer 0.9 Ensembl ENCODE 11.5 +20.7 20723 2.6 MXI1 JUN MAX SIN3A RAD21 BRCA1 RFX5 NFYB SMARCC2 RCOR1 TBX19 MIR557 SFT2D2 LOC441914 GC01M168113
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TBX19 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TBX19 gene promoter:

Genomic Locations for TBX19 Gene

Genomic Locations for TBX19 Gene
chr1:168,281,040-168,314,426
(GRCh38/hg38)
Size:
33,387 bases
Orientation:
Plus strand
chr1:168,250,278-168,283,664
(GRCh37/hg19)

Genomic View for TBX19 Gene

Genes around TBX19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBX19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBX19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBX19 Gene

Proteins for TBX19 Gene

  • Protein details for TBX19 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O60806-TBX19_HUMAN
    Recommended name:
    T-box transcription factor TBX19
    Protein Accession:
    O60806
    Secondary Accessions:
    • Q52M53

    Protein attributes for TBX19 Gene

    Size:
    448 amino acids
    Molecular mass:
    48238 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TBX19 Gene

Post-translational modifications for TBX19 Gene

No Post-translational modifications

Other Protein References for TBX19 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TBX19 Gene

Domains & Families for TBX19 Gene

Gene Families for TBX19 Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted intracellular proteins
  • Transcription factors

Suggested Antigen Peptide Sequences for TBX19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TBX19: view

No data available for UniProtKB/Swiss-Prot for TBX19 Gene

Function for TBX19 Gene

Molecular function for TBX19 Gene

GENATLAS Biochemistry:
murine T-box gene Tbx19 (T,brachyury) homolog,ortholog of chick TbxT
UniProtKB/Swiss-Prot Function:
Transcriptional regulator involved in developmental processes. Can activate POMC gene expression and repress the alpha glycoprotein subunit and thyroid-stimulating hormone beta promoters.

Gene Ontology (GO) - Molecular Function for TBX19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA --
GO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA --
GO:0001158 enhancer sequence-specific DNA binding IEA --
GO:0003677 DNA binding IEA --
GO:0003700 DNA binding transcription factor activity IEA --
genes like me logo Genes that share ontologies with TBX19: view
genes like me logo Genes that share phenotypes with TBX19: view

Human Phenotype Ontology for TBX19 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for TBX19 Gene

MGI Knock Outs for TBX19:

Animal Model Products

miRNA for TBX19 Gene

miRTarBase miRNAs that target TBX19

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Transcription Factor Targets and HOMER Transcription for TBX19 Gene

Localization for TBX19 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TBX19 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TBX19 gene
Compartment Confidence
nucleus 5
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear speckles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for TBX19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TBX19: view

Pathways & Interactions for TBX19 Gene

genes like me logo Genes that share pathways with TBX19: view

Pathways by source for TBX19 Gene

1 BioSystems pathway for TBX19 Gene

Gene Ontology (GO) - Biological Process for TBX19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006357 regulation of transcription by RNA polymerase II TAS 9888994
GO:0006366 transcription by RNA polymerase II IEA --
GO:0009653 anatomical structure morphogenesis TAS 9888994
genes like me logo Genes that share ontologies with TBX19: view

No data available for SIGNOR curated interactions for TBX19 Gene

Drugs & Compounds for TBX19 Gene

(1) Drugs for TBX19 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with TBX19: view

Transcripts for TBX19 Gene

Unigene Clusters for TBX19 Gene

T-box 19:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for TBX19 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9
SP1: - - -
SP2: - - - -
SP3: - -
SP4: - -
SP5:

Relevant External Links for TBX19 Gene

GeneLoc Exon Structure for
TBX19
ECgene alternative splicing isoforms for
TBX19

Expression for TBX19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TBX19 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TBX19 Gene

This gene is overexpressed in Pituitary (x15.7).

NURSA nuclear receptor signaling pathways regulating expression of TBX19 Gene:

TBX19

SOURCE GeneReport for Unigene cluster for TBX19 Gene:

Hs.716656

Evidence on tissue expression from TISSUES for TBX19 Gene

  • Nervous system(2.6)

Phenotype-based relationships between genes and organs from Gene ORGANizer for TBX19 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • endocrine
  • integumentary
  • nervous
Organs:
Head and neck:
  • brain
  • ear
  • head
Thorax:
  • heart
Abdomen:
  • adrenal gland
General:
  • peripheral nerve
  • peripheral nervous system
  • skin
  • sweat gland
genes like me logo Genes that share expression patterns with TBX19: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TBX19 Gene

Orthologs for TBX19 Gene

This gene was present in the common ancestor of animals.

Orthologs for TBX19 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TBX19 33 34
  • 99.4 (n)
dog
(Canis familiaris)
Mammalia TBX19 33 34
  • 91.39 (n)
cow
(Bos Taurus)
Mammalia TBX19 33 34
  • 90.85 (n)
mouse
(Mus musculus)
Mammalia Tbx19 33 16 34
  • 89.06 (n)
oppossum
(Monodelphis domestica)
Mammalia TBX19 34
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TBX19 34
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves TBX19 33 34
  • 74.85 (n)
lizard
(Anolis carolinensis)
Reptilia TBX19 34
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii LOC100538180 33
  • 64.77 (n)
tbx19 34
  • 60 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta byn 35 34
  • 75 (a)
worm
(Caenorhabditis elegans)
Secernentea tbx-9 35
  • 42 (a)
tbx-8 35
  • 41 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4353 34
  • 34 (a)
OneToMany
Species where no ortholog for TBX19 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TBX19 Gene

ENSEMBL:
Gene Tree for TBX19 (if available)
TreeFam:
Gene Tree for TBX19 (if available)

Paralogs for TBX19 Gene

Paralogs for TBX19 Gene

(6) SIMAP similar genes for TBX19 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with TBX19: view

Variants for TBX19 Gene

Sequence variations from dbSNP and Humsavar for TBX19 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000533 benign, ACTH deficiency 168,313,253(+) T/C 3_prime_UTR_variant
rs1003315 likely-benign, ACTH deficiency 168,313,481(+) G/C 3_prime_UTR_variant
rs10918869 likely-benign, ACTH deficiency 168,313,188(+) G/A 3_prime_UTR_variant
rs112010969 uncertain-significance, ACTH deficiency 168,314,237(+) G/A 3_prime_UTR_variant
rs12096093 benign, ACTH deficiency 168,293,289(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TBX19 Gene

Variant ID Type Subtype PubMed ID
nsv1002007 CNV gain 25217958
nsv1078878 OTHER inversion 25765185
nsv831825 CNV gain+loss 17160897

Variation tolerance for TBX19 Gene

Residual Variation Intolerance Score: 37% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.28; 25.56% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TBX19 Gene

Human Gene Mutation Database (HGMD)
TBX19
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBX19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TBX19 Gene

Disorders for TBX19 Gene

MalaCards: The human disease database

(3) MalaCards diseases for TBX19 Gene - From: HGMD, OMIM, ClinVar, Orphanet, Swiss-Prot, DISEASES, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search TBX19 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

TBX19_HUMAN
  • ACTH deficiency, isolated (IAD) [MIM:201400]: A disorder that is characterized by adrenal insufficiency symptoms, such as weight loss, lack of appetite (anorexia), weakness, nausea, vomiting and low blood pressure (hypotension). The pituitary hormone ACTH is decreased or absent, and other cortisol and other steroid hormone levels in the blood are abnormally low. {ECO:0000269 PubMed:11290323}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for TBX19

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with TBX19: view

No data available for Genatlas for TBX19 Gene

Publications for TBX19 Gene

  1. A pituitary cell-restricted T box factor, Tpit, activates POMC transcription in cooperation with Pitx homeoproteins. (PMID: 11290323) Lamolet B … Drouin J (Cell 2001) 3 4 22 58
  2. Identification, mapping, and phylogenomic analysis of four new human members of the T-box gene family: EOMES, TBX6, TBX18, and TBX19. (PMID: 9888994) Yi CH … Brook JD (Genomics 1999) 2 3 4 58
  3. Pre-B-cell leukemia homeobox 1 (PBX1) shows functional and possible genetic association with bone mineral density variation. (PMID: 19064610) Cheung CL … Kung AW (Human molecular genetics 2009) 3 44 58
  4. Follow-up of a major linkage peak on chromosome 1 reveals suggestive QTLs associated with essential hypertension: GenNet study. (PMID: 19536175) Ehret GB … Chakravarti A (European journal of human genetics : EJHG 2009) 3 44 58
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58

Products for TBX19 Gene

Sources for TBX19 Gene

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