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Aliases for ST3GAL5 Gene

Aliases for ST3GAL5 Gene

  • ST3 Beta-Galactoside Alpha-2,3-Sialyltransferase 5 2 3
  • ST3GalV 3 4 6
  • SIAT9 3 4 6
  • Sialyltransferase 9 (CMP-NeuAc:Lactosylceramide Alpha-2,3-Sialyltransferase; GM3 Synthase) 2 3
  • CMP-NeuAc:Lactosylceramide Alpha-2,3-Sialyltransferase 3 4
  • Ganglioside GM3 Synthase 3 4
  • EC 4 63
  • ST3Gal V 3 4
  • Lactosylceramide Alpha-2,3-Sialyltransferase 3
  • Alpha 2,3-Sialyltransferase V 3
  • Sialyltransferase 9 4
  • GM3 Synthase 3
  • SIATGM3S 3
  • SATI 3

External Ids for ST3GAL5 Gene

Previous HGNC Symbols for ST3GAL5 Gene

  • SIAT9

Previous GeneCards Identifiers for ST3GAL5 Gene

  • GC02M085978
  • GC02M085919
  • GC02M086066
  • GC02M085963

Summaries for ST3GAL5 Gene

Entrez Gene Summary for ST3GAL5 Gene

  • Ganglioside GM3 is known to participate in the induction of cell differentiation, modulation of cell proliferation, maintenance of fibroblast morphology, signal transduction, and integrin-mediated cell adhesion. The protein encoded by this gene is a type II membrane protein which catalyzes the formation of GM3 using lactosylceramide as the substrate. The encoded protein is a member of glycosyltransferase family 29 and may be localized to the Golgi apparatus. Mutation in this gene has been associated with Amish infantile epilepsy syndrome. Transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for ST3GAL5 Gene

ST3GAL5 (ST3 Beta-Galactoside Alpha-2,3-Sialyltransferase 5) is a Protein Coding gene. Diseases associated with ST3GAL5 include amish infantile epilepsy syndrome and salt-and-pepper syndrome. Among its related pathways are Metabolism and Glycosphingolipid biosynthesis - ganglio series. GO annotations related to this gene include sialyltransferase activity and lactosylceramide alpha-2,3-sialyltransferase activity. An important paralog of this gene is ST3GAL4.

UniProtKB/Swiss-Prot for ST3GAL5 Gene

  • Catalyzes the formation of ganglioside GM3 (alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1, 4-beta-D-glucosylceramide).

Gene Wiki entry for ST3GAL5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST3GAL5 Gene

Genomics for ST3GAL5 Gene

Regulatory Elements for ST3GAL5 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ST3GAL5 Gene

85,839,144 bp from pter
85,889,034 bp from pter
49,891 bases
Minus strand

Genomic View for ST3GAL5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ST3GAL5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST3GAL5 Gene

Proteins for ST3GAL5 Gene

  • Protein details for ST3GAL5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Lactosylceramide alpha-2,3-sialyltransferase
    Protein Accession:
    Secondary Accessions:
    • B3KM82
    • D6W5L9
    • O94902
    • Q53QU1
    • Q6NZX4
    • Q6YFL1

    Protein attributes for ST3GAL5 Gene

    418 amino acids
    Molecular mass:
    47990 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAD14634.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAF66146.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAQ89463.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAY24147.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=BAA33950.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ST3GAL5 Gene


neXtProt entry for ST3GAL5 Gene

Proteomics data for ST3GAL5 Gene at MOPED

Post-translational modifications for ST3GAL5 Gene

Other Protein References for ST3GAL5 Gene

Domains for ST3GAL5 Gene

Gene Families for ST3GAL5 Gene

Protein Domains for ST3GAL5 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the glycosyltransferase 29 family.
  • Belongs to the glycosyltransferase 29 family.
genes like me logo Genes that share domains with ST3GAL5: view

Function for ST3GAL5 Gene

Molecular function for ST3GAL5 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
CMP-N-acetylneuraminate + beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1)-ceramide = CMP + alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1)-ceramide
UniProtKB/Swiss-Prot Function:
Catalyzes the formation of ganglioside GM3 (alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1, 4-beta-D-glucosylceramide).

Enzyme Numbers (IUBMB) for ST3GAL5 Gene

Gene Ontology (GO) - Molecular Function for ST3GAL5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004513 neolactotetraosylceramide alpha-2,3-sialyltransferase activity TAS 9822625
GO:0008373 sialyltransferase activity TAS 10092602
GO:0047291 lactosylceramide alpha-2,3-sialyltransferase activity IDA 9822625
genes like me logo Genes that share ontologies with ST3GAL5: view

Phenotypes for ST3GAL5 Gene

MGI mutant phenotypes for ST3GAL5:
inferred from 1 alleles
GenomeRNAi human phenotypes for ST3GAL5:
genes like me logo Genes that share phenotypes with ST3GAL5: view

Animal Models for ST3GAL5 Gene

MGI Knock Outs for ST3GAL5:

Animal Model Products

miRNA for ST3GAL5 Gene

miRTarBase miRNAs that target ST3GAL5

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ST3GAL5

In Situ Assay Products

Flow Cytometry Products

No data available for Transcription Factor Targeting and HOMER Transcription for ST3GAL5 Gene

Localization for ST3GAL5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ST3GAL5 Gene

Golgi apparatus membrane; Single-pass type II membrane protein.

Subcellular locations from

Jensen Localization Image for ST3GAL5 Gene COMPARTMENTS Subcellular localization image for ST3GAL5 gene
Compartment Confidence
golgi apparatus 5
plasma membrane 4
cytosol 2
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for ST3GAL5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005887 integral component of plasma membrane TAS 9822625
GO:0016021 integral component of membrane TAS 10092602
GO:0030173 integral component of Golgi membrane IEA --
genes like me logo Genes that share ontologies with ST3GAL5: view

Pathways for ST3GAL5 Gene

genes like me logo Genes that share pathways with ST3GAL5: view

Pathways by source for ST3GAL5 Gene

1 BioSystems pathway for ST3GAL5 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for ST3GAL5 Gene

Gene Ontology (GO) - Biological Process for ST3GAL5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001574 ganglioside biosynthetic process NAS 9822625
GO:0005975 carbohydrate metabolic process TAS 9822625
GO:0006486 protein glycosylation --
GO:0006488 dolichol-linked oligosaccharide biosynthetic process TAS --
GO:0006688 glycosphingolipid biosynthetic process TAS 10092602
genes like me logo Genes that share ontologies with ST3GAL5: view

Compounds for ST3GAL5 Gene

(1) Drugbank Compounds for ST3GAL5 Gene

Compound Status Synonyms Cas Number PubChem ID Type Actions PubMed IDs
99mTc-14 F7 Mab
Target investigational

(106) HMDB Compounds for ST3GAL5 Gene

Compound Synonyms Cas Number PubMed IDs
Cytidine monophosphate
  • 5'-CMP
Cytidine monophosphate N-acetylneuraminic acid
  • CMP-N-acetylneuraminate
Ganglioside GA1 (d18:1/12:0)
  • Asialo GM1
Ganglioside GA1 (d18:1/16:0)
  • Asialo GM1
Ganglioside GA1 (d18:1/18:0)
  • Asialo GM1

(1) Novoseek inferred chemical compound relationships for ST3GAL5 Gene

Compound -log(P) Hits PubMed IDs
ganglioside 78.8 4
genes like me logo Genes that share compounds with ST3GAL5: view

Transcripts for ST3GAL5 Gene

Unigene Clusters for ST3GAL5 Gene

ST3 beta-galactoside alpha-2,3-sialyltransferase 5:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ST3GAL5

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ST3GAL5 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8a · 8b · 8c ^ 9a · 9b ^ 10a · 10b · 10c · 10d ^ 11 ^ 12a · 12b ^ 13 ^ 14a · 14b ·
SP1: - - - - - - - -
SP2: - - - - - - - - - - - -
SP3: - - - - - - - - - -
SP4: - - - - - -
SP5: - - - -
SP7: - - - - - - - - -
SP8: - - -
SP9: - -
SP10: - - - -
SP11: - - -

ExUns: 14c · 14d

Relevant External Links for ST3GAL5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ST3GAL5 Gene

mRNA expression in normal human tissues for ST3GAL5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for ST3GAL5 Gene

This gene is overexpressed in Heart (61.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ST3GAL5 Gene

SOURCE GeneReport for Unigene cluster for ST3GAL5 Gene Hs.415117

mRNA Expression by UniProt/SwissProt for ST3GAL5 Gene

Tissue specificity: Ubiquitous. High expression in brain, skeletal muscle, placenta, and testis
genes like me logo Genes that share expressions with ST3GAL5: view

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and Expression partners for ST3GAL5 Gene

Orthologs for ST3GAL5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ST3GAL5 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia ST3GAL5 35
  • 85.33 (n)
  • 86.12 (a)
ST3GAL5 36
  • 87 (a)
(Canis familiaris)
Mammalia ST3GAL5 35
  • 89.63 (n)
  • 91.63 (a)
ST3GAL5 36
  • 92 (a)
(Mus musculus)
Mammalia St3gal5 35
  • 83.62 (n)
  • 83.05 (a)
St3gal5 16
St3gal5 36
  • 84 (a)
(Pan troglodytes)
Mammalia ST3GAL5 35
  • 99.26 (n)
  • 98.62 (a)
ST3GAL5 36
  • 99 (a)
(Rattus norvegicus)
Mammalia St3gal5 35
  • 84.37 (n)
  • 83.16 (a)
(Monodelphis domestica)
Mammalia ST3GAL5 36
  • 73 (a)
(Ornithorhynchus anatinus)
Mammalia ST3GAL5 36
  • 76 (a)
(Gallus gallus)
Aves ST3GAL5 35
  • 72.56 (n)
  • 69.89 (a)
ST3GAL5 36
  • 68 (a)
(Anolis carolinensis)
Reptilia ST3GAL5 36
  • 66 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia st3gal5 35
  • 61.97 (n)
  • 60.26 (a)
(Danio rerio)
Actinopterygii st3gal5 35
  • 53.06 (n)
  • 48.42 (a)
st3gal5 36
  • 45 (a)
Species with no ortholog for ST3GAL5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ST3GAL5 Gene

Gene Tree for ST3GAL5 (if available)
Gene Tree for ST3GAL5 (if available)

Paralogs for ST3GAL5 Gene

Paralogs for ST3GAL5 Gene

(5) SIMAP similar genes for ST3GAL5 Gene using alignment to 5 proteins: Pseudogenes for ST3GAL5 Gene

genes like me logo Genes that share paralogs with ST3GAL5: view

Variants for ST3GAL5 Gene

Sequence variations from dbSNP and Humsavar for ST3GAL5 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs13191 -- 85,850,356(-) AGGTA(A/G)AGGCT intron-variant
rs1000374 -- 85,839,050(+) CTACT(A/G)GCATC downstream-variant-500B
rs1054936 -- 85,850,160(+) CATCC(C/G)AAGAA intron-variant
rs1138484 Benign 85,861,188(-) TGACC(A/G)TGTAA reference, missense, nc-transcript-variant
rs1518990 -- 85,852,218(-) GACAC(A/G)AGTTT intron-variant

Relevant External Links for ST3GAL5 Gene

HapMap Linkage Disequilibrium report
Human Gene Mutation Database (HGMD)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ST3GAL5 Gene

Disorders for ST3GAL5 Gene

(1) OMIM Diseases for ST3GAL5 Gene (604402)


  • Amish infantile epilepsy syndrome (AIES) [MIM:609056]: An autosomal recessive, infantile-onset symptomatic epilepsy associated with developmental stagnation and blindness. {ECO:0000269 PubMed:15502825}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(1) University of Copenhagen DISEASES for ST3GAL5 Gene

Relevant External Links for ST3GAL5

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
genes like me logo Genes that share disorders with ST3GAL5: view

No data available for Novoseek inferred disease relationships and Genatlas for ST3GAL5 Gene

Publications for ST3GAL5 Gene

  1. Expression cloning and functional characterization of human cDNA for ganglioside GM3 synthase. (PMID: 9822625) Ishii A. … Saito M. (J. Biol. Chem. 1998) 2 3 4 23
  2. Combinatorial PCR approach to homology-based cloning: cloning and expression of mouse and human GM3-synthase. (PMID: 10619706) Kapitonov D. … Yu R.K. (Glycoconj. J. 1999) 3 23
  3. Molecular mechanism for transcriptional activation of ganglioside GM3 synthase and its function in differentiation of HL-60 cells. (PMID: 15385432) Chung T.W. … Kim C.H. (Glycobiology 2005) 3 23
  4. Evaluation of candidate stromal epithelial cross-talk genes identifies association between risk of serous ovarian cancer and TERT, a cancer susceptibility &amp;quot;hot-spot&amp;quot;. (PMID: 20628624) Johnatty S.E. … . (PLoS Genet. 2010) 3 48
  5. Investigation of genetic susceptibility factors for human longevity - a targeted nonsynonymous SNP study. (PMID: 20800603) Flachsbart F. … Nebel A. (Mutat. Res. 2010) 3 48

Products for ST3GAL5 Gene

Sources for ST3GAL5 Gene

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