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Aliases for SUCLA2 Gene

Aliases for SUCLA2 Gene

  • Succinate-CoA Ligase ADP-Forming Beta Subunit 2 3
  • Succinate-CoA Ligase, ADP-Forming, Beta Subunit 2 3 5
  • ATP-Specific Succinyl-CoA Synthetase Subunit Beta 3 4
  • Succinyl-CoA Synthetase Beta-A Chain 3 4
  • Succinate--CoA Ligase (ADP-Forming) 2 3
  • Renal Carcinoma Antigen NY-REN-39 3 4
  • EC 6.2.1.5 4 63
  • SCS-BetaA 3 4
  • Mitochondrial Succinyl-CoA Ligase [ADP-Forming] Subunit Beta 3
  • ATP-Specific Succinyl-CoA Synthetase, Beta Subunit 3
  • Succinate-CoA Ligase Beta Subunit 3
  • EC 6.2.1 63
  • A-BETA 3
  • MTDPS5 3

External Ids for SUCLA2 Gene

Previous GeneCards Identifiers for SUCLA2 Gene

  • GC13M046516
  • GC13M042504
  • GC13M047215
  • GC13M046314
  • GC13M047414
  • GC13M048510
  • GC13M029309

Summaries for SUCLA2 Gene

Entrez Gene Summary for SUCLA2 Gene

  • Succinyl-CoA synthetase (SCS) is a mitochondrial matrix enzyme that acts as a heterodimer, being composed of an invariant alpha subunit and a substrate-specific beta subunit. The protein encoded by this gene is an ATP-specific SCS beta subunit that dimerizes with the SCS alpha subunit to form SCS-A, an essential component of the tricarboxylic acid cycle. SCS-A hydrolyzes ATP to convert succinate to succinyl-CoA. Defects in this gene are a cause of myopathic mitochondrial DNA depletion syndrome. A pseudogene of this gene has been found on chromosome 6. [provided by RefSeq, Jul 2008]

GeneCards Summary for SUCLA2 Gene

SUCLA2 (Succinate-CoA Ligase ADP-Forming Beta Subunit) is a Protein Coding gene. Diseases associated with SUCLA2 include mitochondrial dna depletion syndrome 5 and succinate-coa ligase deficiency. Among its related pathways are Metabolism and Valproic Acid Pathway, Pharmacodynamics. GO annotations related to this gene include succinate-CoA ligase (ADP-forming) activity. An important paralog of this gene is SUCLG2.

UniProtKB/Swiss-Prot for SUCLA2 Gene

  • Catalyzes the ATP-dependent ligation of succinate and CoA to form succinyl-CoA.

Gene Wiki entry for SUCLA2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUCLA2 Gene

Genomics for SUCLA2 Gene

Regulatory Elements for SUCLA2 Gene

Promoters for SUCLA2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SUCLA2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SUCLA2 Gene

Chromosome:
13
Start:
47,936,491 bp from pter
End:
48,001,354 bp from pter
Size:
64,864 bases
Orientation:
Minus strand

Genomic View for SUCLA2 Gene

Genes around SUCLA2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUCLA2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUCLA2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUCLA2 Gene

Proteins for SUCLA2 Gene

  • Protein details for SUCLA2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P2R7-SUCB1_HUMAN
    Recommended name:
    Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
    Protein Accession:
    Q9P2R7
    Secondary Accessions:
    • B2RDE7
    • O95194
    • Q5T9Q4
    • Q5T9Q6
    • Q9NV21
    • Q9NVP7

    Protein attributes for SUCLA2 Gene

    Size:
    463 amino acids
    Molecular mass:
    50317 Da
    Quaternary structure:
    • Heterodimer of an alpha and a beta subunit. Interacts with ALAS2.

    Alternative splice isoforms for SUCLA2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SUCLA2 Gene

Proteomics data for SUCLA2 Gene at MOPED

Post-translational modifications for SUCLA2 Gene

  • Ubiquitination at Lys 417
  • Modification sites at PhosphoSitePlus

Other Protein References for SUCLA2 Gene

Antibody Products

Domains & Families for SUCLA2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9P2R7

UniProtKB/Swiss-Prot:

SUCB1_HUMAN :
  • Contains 1 ATP-grasp domain.
  • Belongs to the succinate/malate CoA ligase beta subunit family.
Domain:
  • Contains 1 ATP-grasp domain.
Family:
  • Belongs to the succinate/malate CoA ligase beta subunit family.
genes like me logo Genes that share domains with SUCLA2: view

No data available for Gene Families for SUCLA2 Gene

Function for SUCLA2 Gene

Molecular function for SUCLA2 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + succinate + CoA = ADP + phosphate + succinyl-CoA.
UniProtKB/Swiss-Prot Function:
Catalyzes the ATP-dependent ligation of succinate and CoA to form succinyl-CoA.

Enzyme Numbers (IUBMB) for SUCLA2 Gene

Gene Ontology (GO) - Molecular Function for SUCLA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004775 succinate-CoA ligase (ADP-forming) activity IEA,TAS 10727444
GO:0005515 protein binding IPI 10727444
genes like me logo Genes that share ontologies with SUCLA2: view
genes like me logo Genes that share phenotypes with SUCLA2: view

Human Phenotype Ontology for SUCLA2 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

  • Taconic Biosciences Mouse Models for SUCLA2

miRNA for SUCLA2 Gene

No data available for Animal Models , Transcription Factor Targets and HOMER Transcription for SUCLA2 Gene

Localization for SUCLA2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SUCLA2 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SUCLA2 Gene COMPARTMENTS Subcellular localization image for SUCLA2 gene
Compartment Confidence
extracellular 5
mitochondrion 5
cytosol 2
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for SUCLA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043209 myelin sheath IEA --
genes like me logo Genes that share ontologies with SUCLA2: view

Pathways & Interactions for SUCLA2 Gene

genes like me logo Genes that share pathways with SUCLA2: view

UniProtKB/Swiss-Prot Q9P2R7-SUCB1_HUMAN

  • Pathway: Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.

Gene Ontology (GO) - Biological Process for SUCLA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006104 succinyl-CoA metabolic process IEA,TAS 9765291
GO:0006781 succinyl-CoA pathway NAS 10727444
GO:0008152 metabolic process IEA --
genes like me logo Genes that share ontologies with SUCLA2: view

No data available for SIGNOR curated interactions for SUCLA2 Gene

Drugs & Compounds for SUCLA2 Gene

(8) Drugs for SUCLA2 Gene - From: HMDB, Novoseek, and DrugBank

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Succinic acid Approved Nutra Full agonist, Agonist, Target 0
Adenosine triphosphate Approved Nutra 0
Guanosine diphosphate Experimental Pharma 0
Guanosine triphosphate Experimental Pharma 0
Succinyl-CoA Experimental Pharma 0

(7) Additional Compounds for SUCLA2 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
IDP
  • 5'-IDP
  • IDP
  • Inosine 5'-(trihydrogen diphosphate)
  • Inosine 5'-(trihydrogen pyrophosphate)
  • Inosine 5'-diphosphate
86-04-4
inosine triphosphate
  • 2'-Inosine-5'-triphosphate
  • 5'-ITP
  • 5-ITP
  • Inosine 5
  • Inosine 5'-(tetrahydrogen triphosphate)
132-06-9
Itaconic acid
  • Methylenebutanedioate
  • 2-Hydroxy-3-Naphthoyl-2-Naphthylamine
  • 2-Methylenesuccinate
  • 2-Methylenesuccinic acid
  • 2-Propene-1,2-dicarboxylate
97-65-4
Itaconyl-CoA
  • Itaconoyl CoA
  • Itaconoyl coenzyme A
  • S-(1-Hydrogen methylenesuccinate) CoA
  • S-(1-Hydrogen methylenesuccinate) Coenzyme A
  • S-3-Methylenesuccinate CoA
6008-93-1
genes like me logo Genes that share compounds with SUCLA2: view

Transcripts for SUCLA2 Gene

Unigene Clusters for SUCLA2 Gene

Succinate-CoA ligase, ADP-forming, beta subunit:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SUCLA2 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b
SP1: - - - -
SP2:
SP3: -
SP4: - -
SP5:

Relevant External Links for SUCLA2 Gene

GeneLoc Exon Structure for
SUCLA2
ECgene alternative splicing isoforms for
SUCLA2

Expression for SUCLA2 Gene

mRNA expression in normal human tissues for SUCLA2 Gene

mRNA differential expression in normal tissues according to GTEx for SUCLA2 Gene

This gene is overexpressed in Muscle - Skeletal (x4.1).

Protein differential expression in normal tissues from HIPED for SUCLA2 Gene

This gene is overexpressed in Heart (10.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SUCLA2 Gene



SOURCE GeneReport for Unigene cluster for SUCLA2 Gene Hs.743361

mRNA Expression by UniProt/SwissProt for SUCLA2 Gene

Q9P2R7-SUCB1_HUMAN
Tissue specificity: Widely expressed. Not expressed in liver and lung.
genes like me logo Genes that share expression patterns with SUCLA2: view

Protein tissue co-expression partners for SUCLA2 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for SUCLA2 Gene

Orthologs for SUCLA2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SUCLA2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SUCLA2 35
  • 91.94 (n)
  • 93.3 (a)
SUCLA2 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SUCLA2 35
  • 93.78 (n)
  • 94.47 (a)
SUCLA2 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sucla2 35
  • 88.05 (n)
  • 91.14 (a)
Sucla2 16
Sucla2 36
  • 91 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SUCLA2 35
  • 99.21 (n)
  • 99.78 (a)
SUCLA2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sucla2 35
  • 87.26 (n)
  • 89.2 (a)
oppossum
(Monodelphis domestica)
Mammalia SUCLA2 36
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SUCLA2 36
  • 21 (a)
OneToOne
chicken
(Gallus gallus)
Aves SUCLA2 35
  • 81.63 (n)
  • 85.68 (a)
SUCLA2 36
  • 85 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 74 (a)
OneToMany
-- 36
  • 71 (a)
OneToMany
-- 36
  • 69 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC75984 35
sucla2 35
  • 76.25 (n)
  • 81.05 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.9091 35
zebrafish
(Danio rerio)
Actinopterygii sucla2 35
  • 71.44 (n)
  • 79.18 (a)
wufj90d07 35
sucla2 36
  • 78 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG11963 37
  • 59 (a)
Sucb 37
  • 49 (a)
skap 35
  • 58.33 (n)
  • 59.47 (a)
skap 36
  • 50 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004744 35
  • 61.23 (n)
  • 61.8 (a)
worm
(Caenorhabditis elegans)
Secernentea C50F7.4 37
  • 49 (a)
F47B10.1 37
  • 63 (a)
suca-1 35
  • 60.69 (n)
  • 63.2 (a)
suca-1 36
  • 60 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AEL211W 35
  • 49.62 (n)
  • 50.89 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A05478g 35
  • 52.96 (n)
  • 51.78 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes LSC2 35
  • 54.85 (n)
  • 48.61 (a)
LSC2 36
  • 45 (a)
OneToMany
LSC2 38
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G20420 35
  • 57.35 (n)
  • 52.94 (a)
rice
(Oryza sativa)
Liliopsida Os.9758 35
Os02g0621700 35
  • 57.38 (n)
  • 53.3 (a)
corn
(Zea mays)
Liliopsida Zm.6580 35
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4817 35
bread mold
(Neurospora crassa)
Ascomycetes NCU08471 35
  • 54.8 (n)
  • 58.6 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPCC1620.08 35
  • 56.26 (n)
  • 55.21 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7264 36
  • 70 (a)
OneToOne
Species with no ortholog for SUCLA2:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SUCLA2 Gene

ENSEMBL:
Gene Tree for SUCLA2 (if available)
TreeFam:
Gene Tree for SUCLA2 (if available)

Paralogs for SUCLA2 Gene

Paralogs for SUCLA2 Gene

(4) SIMAP similar genes for SUCLA2 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with SUCLA2: view

Variants for SUCLA2 Gene

Sequence variations from dbSNP and Humsavar for SUCLA2 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs7320366 - 47,973,332(+) AGGAG(A/T)CTCAG nc-transcript-variant, reference, missense
VAR_046214 -
VAR_046215 Mitochondrial DNA depletion syndrome 5 (MTDPS5)
VAR_046216 Mitochondrial DNA depletion syndrome 5 (MTDPS5)
VAR_070123 Mitochondrial DNA depletion syndrome 5 (MTDPS5)

Structural Variations from Database of Genomic Variants (DGV) for SUCLA2 Gene

Variant ID Type Subtype PubMed ID
nsv1029 CNV Insertion 18451855
nsv832601 CNV Gain 17160897

Variation tolerance for SUCLA2 Gene

Residual Variation Intolerance Score: 68.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.37; 63.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SUCLA2 Gene

HapMap Linkage Disequilibrium report
SUCLA2
Human Gene Mutation Database (HGMD)
SUCLA2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SUCLA2 Gene

Disorders for SUCLA2 Gene

MalaCards: The human disease database

(7) MalaCards diseases for SUCLA2 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
mitochondrial dna depletion syndrome 5
  • encephalomyopathic mitochondrial dna depletion syndrome with or without methylmalonic aciduria
succinate-coa ligase deficiency
  • mitochondrial dna depletion syndrome, encephalomyopathic form, with mild methylmalonic aciduria
sucla2-related mitochondrial dna depletion syndrome, encephalomyopathic form, with mild methylmalonic aciduria
  • sucla2 deficiency
mitochondrial dna depletion syndrome, encephalomyopathic form
mitochondrial encephalomyopathy
  • mitochondrial encephalomyopathies
- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

SUCB1_HUMAN
  • Mitochondrial DNA depletion syndrome 5 (MTDPS5) [MIM:612073]: A disorder due to mitochondrial dysfunction. It is characterized by infantile onset of hypotonia, neurologic deterioration, a hyperkinetic-dystonic movement disorder, external ophthalmoplegia, deafness, variable renal tubular dysfunction, and mild methylmalonic aciduria in some patients. {ECO:0000269 PubMed:15877282, ECO:0000269 PubMed:17287286, ECO:0000269 PubMed:17301081, ECO:0000269 PubMed:23759946}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for SUCLA2

Genetic Association Database (GAD)
SUCLA2
Human Genome Epidemiology (HuGE) Navigator
SUCLA2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SUCLA2
genes like me logo Genes that share disorders with SUCLA2: view

No data available for Genatlas for SUCLA2 Gene

Publications for SUCLA2 Gene

  1. Genetic evidence for the expression of ATP- and GTP-specific succinyl-CoA synthetases in multicellular eucaryotes. (PMID: 9765291) Johnson J.D. … Lambeth D.O. (J. Biol. Chem. 1998) 2 3 4 67
  2. Drugs, their targets and the nature and number of drug targets. (PMID: 17016423) Imming P. … Meyer A. (Nat Rev Drug Discov 2006) 25 26
  3. How many drug targets are there? (PMID: 17139284) Overington J.P. … Hopkins A.L. (Nat Rev Drug Discov 2006) 25 26
  4. Interaction between succinyl CoA synthetase and the heme-biosynthetic enzyme ALAS-E is disrupted in sideroblastic anemia. (PMID: 10727444) Furuyama K. … Shigeru S. (J. Clin. Invest. 2000) 3 23
  5. The Protein Data Bank. (PMID: 10592235) Berman H.M. … Bourne P.E. (Nucleic Acids Res. 2000) 25 26

Products for SUCLA2 Gene

Sources for SUCLA2 Gene

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