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Aliases for LSM10 Gene

Aliases for LSM10 Gene

  • LSM10, U7 Small Nuclear RNA Associated 2 3 5
  • U7 SnRNP-Specific Sm-Like Protein LSM10 3
  • MSTP074 3
  • MST074 3

External Ids for LSM10 Gene

Previous GeneCards Identifiers for LSM10 Gene

  • GC01P036417
  • GC01M035913
  • GC01M036285
  • GC01M036286
  • GC01M036528
  • GC01M036631
  • GC01M036856
  • GC01M034975

Summaries for LSM10 Gene

GeneCards Summary for LSM10 Gene

LSM10 (LSM10, U7 Small Nuclear RNA Associated) is a Protein Coding gene. Among its related pathways are Gene Expression and RNA Polymerase II Transcription Initiation And Promoter Clearance. GO annotations related to this gene include histone pre-mRNA DCP binding.

UniProtKB/Swiss-Prot for LSM10 Gene

  • Appears to function in the U7 snRNP complex that is involved in histone 3-end processing. Increases U7 snRNA levels but not histone 3-end pre-mRNA processing activity, when overexpressed. Required for cell cycle progression from G1 to S phases. Binds specifically to U7 snRNA. Binds to the downstream cleavage product (DCP) of histone pre-mRNA in a U7 snRNP dependent manner.

Gene Wiki entry for LSM10 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LSM10 Gene

Genomics for LSM10 Gene

Regulatory Elements for LSM10 Gene

Promoters for LSM10 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LSM10 on UCSC Golden Path with GeneCards custom track

Genomic Location for LSM10 Gene

Chromosome:
1
Start:
36,391,238 bp from pter
End:
36,397,959 bp from pter
Size:
6,722 bases
Orientation:
Minus strand

Genomic View for LSM10 Gene

Genes around LSM10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LSM10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LSM10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LSM10 Gene

Proteins for LSM10 Gene

  • Protein details for LSM10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969L4-LSM10_HUMAN
    Recommended name:
    U7 snRNA-associated Sm-like protein LSm10
    Protein Accession:
    Q969L4

    Protein attributes for LSM10 Gene

    Size:
    123 amino acids
    Molecular mass:
    14080 Da
    Quaternary structure:
    • Component of the heptameric ring U7 snRNP complex, or U7 Sm protein core complex, at least composed of LSM10, LSM11, SNRPB, SNRPD3, SNRPE, SNRPF, SNRPG and U7 snRNA. Formation of the U7 snRNP is an ATP-dependent process mediated by a specialized SMN complex containing at least the Sm protein core complex and additionally, the U7-specific LSM10 and LSM11 proteins. Interacts with CLNS1A and SMN.

neXtProt entry for LSM10 Gene

Proteomics data for LSM10 Gene at MOPED

Post-translational modifications for LSM10 Gene

  • Not methylated. Methylation is not necessary for interaction with SMN.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for LSM10 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LSM10 Gene

Domains & Families for LSM10 Gene

Suggested Antigen Peptide Sequences for LSM10 Gene

Graphical View of Domain Structure for InterPro Entry

Q969L4

UniProtKB/Swiss-Prot:

LSM10_HUMAN :
  • Belongs to the snRNP Sm proteins family.
Family:
  • Belongs to the snRNP Sm proteins family.
genes like me logo Genes that share domains with LSM10: view

No data available for Gene Families for LSM10 Gene

Function for LSM10 Gene

Molecular function for LSM10 Gene

UniProtKB/Swiss-Prot Function:
Appears to function in the U7 snRNP complex that is involved in histone 3-end processing. Increases U7 snRNA levels but not histone 3-end pre-mRNA processing activity, when overexpressed. Required for cell cycle progression from G1 to S phases. Binds specifically to U7 snRNA. Binds to the downstream cleavage product (DCP) of histone pre-mRNA in a U7 snRNP dependent manner.
genes like me logo Genes that share phenotypes with LSM10: view

Animal Models for LSM10 Gene

MGI Knock Outs for LSM10:

Animal Model Products

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for LSM10 Gene

Localization for LSM10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LSM10 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LSM10 Gene COMPARTMENTS Subcellular localization image for LSM10 gene
Compartment Confidence
nucleus 5
cytosol 1
extracellular 1
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for LSM10 Gene

Pathways & Interactions for LSM10 Gene

genes like me logo Genes that share pathways with LSM10: view

Gene Ontology (GO) - Biological Process for LSM10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006366 transcription from RNA polymerase II promoter TAS --
GO:0006397 mRNA processing IEA --
GO:0008334 histone mRNA metabolic process TAS --
GO:0008380 RNA splicing IEA --
GO:1900087 positive regulation of G1/S transition of mitotic cell cycle IMP 16914750
genes like me logo Genes that share ontologies with LSM10: view

No data available for SIGNOR curated interactions for LSM10 Gene

Drugs & Compounds for LSM10 Gene

No Compound Related Data Available

Transcripts for LSM10 Gene

mRNA/cDNA for LSM10 Gene

Unigene Clusters for LSM10 Gene

LSM10, U7 small nuclear RNA associated:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LSM10 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3 ^ 4
SP1: - -
SP2: -
SP3:

Relevant External Links for LSM10 Gene

GeneLoc Exon Structure for
LSM10
ECgene alternative splicing isoforms for
LSM10

Expression for LSM10 Gene

mRNA expression in normal human tissues for LSM10 Gene

Protein differential expression in normal tissues from HIPED for LSM10 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for LSM10 Gene



SOURCE GeneReport for Unigene cluster for LSM10 Gene Hs.603131

genes like me logo Genes that share expression patterns with LSM10: view

Protein tissue co-expression partners for LSM10 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for LSM10 Gene

Orthologs for LSM10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LSM10 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia LSM10 35
  • 90.71 (n)
  • 90.16 (a)
LSM10 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LSM10 35
  • 86.72 (n)
  • 91.06 (a)
LSM10 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Lsm10 35
  • 84.44 (n)
  • 90.83 (a)
Lsm10 16
Lsm10 36
  • 89 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LSM10 35
  • 99.73 (n)
  • 100 (a)
LSM10 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lsm10 35
  • 84.44 (n)
  • 91.67 (a)
oppossum
(Monodelphis domestica)
Mammalia LSM10 36
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia LSM10 36
  • 74 (a)
OneToOne
chicken
(Gallus gallus)
Aves LSM10 35
  • 73.44 (n)
  • 72.36 (a)
LSM10 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia LSM10 36
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia lsm10 35
  • 68.32 (n)
  • 70.25 (a)
Str.905 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.6554 35
zebrafish
(Danio rerio)
Actinopterygii LOC100536270 35
  • 67.51 (n)
  • 70.59 (a)
lsm10 36
  • 70 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4129 36
  • 28 (a)
OneToOne
Species with no ortholog for LSM10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LSM10 Gene

ENSEMBL:
Gene Tree for LSM10 (if available)
TreeFam:
Gene Tree for LSM10 (if available)

Paralogs for LSM10 Gene

(2) SIMAP similar genes for LSM10 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LSM10: view

No data available for Paralogs for LSM10 Gene

Variants for LSM10 Gene

Sequence variations from dbSNP and Humsavar for LSM10 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs7170 -- 36,393,562(-) ATCCT(A/G)TATGT utr-variant-3-prime
rs884925 -- 36,396,392(-) cagTC(C/T)GTTTC intron-variant
rs1126984 -- 36,397,855(-) TCCGT(C/T)CTGCT utr-variant-5-prime
rs2249083 -- 36,396,250(+) aaaaa(A/G)aaagc intron-variant
rs2994005 -- 36,395,978(+) gcact(C/T)tggga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LSM10 Gene

Variant ID Type Subtype PubMed ID
dgv47e1 CNV Complex 17122850

Variation tolerance for LSM10 Gene

Residual Variation Intolerance Score: 39.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.91; 18.88% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LSM10 Gene

HapMap Linkage Disequilibrium report
LSM10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LSM10 Gene

Disorders for LSM10 Gene

Relevant External Links for LSM10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LSM10

No disorders were found for LSM10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LSM10 Gene

Publications for LSM10 Gene

  1. Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein. (PMID: 11574479) Pillai R.S. … Mueller B. (EMBO J. 2001) 2 3 4 67
  2. ZFP100, a component of the active U7 snRNP limiting for histone pre- mRNA processing, is required for entry into S phase. (PMID: 16914750) Wagner E.J. … Marzluff W.F. (Mol. Cell. Biol. 2006) 3 23
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  4. The SMN interactome includes Myb-binding protein 1a. (PMID: 19928837) Fuller H.R. … Morris G.E. (J. Proteome Res. 2010) 3
  5. An empirical framework for binary interactome mapping. (PMID: 19060904) Venkatesan K. … Vidal M. (Nat. Methods 2009) 3

Products for LSM10 Gene

Sources for LSM10 Gene

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