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Aliases for NRIP1 Gene

Aliases for NRIP1 Gene

  • Nuclear Receptor Interacting Protein 1 2 3
  • Nuclear Factor RIP140 2 3 4
  • Receptor Interacting Protein 140 2 3
  • Receptor-Interacting Protein 140 3 4
  • RIP140 3 6
  • Nuclear Receptor-Interacting Protein 1 3

External Ids for NRIP1 Gene

Summaries for NRIP1 Gene

Entrez Gene Summary for NRIP1 Gene

  • Nuclear receptor interacting protein 1 (NRIP1) is a nuclear protein that specifically interacts with the hormone-dependent activation domain AF2 of nuclear receptors. Also known as RIP140, this protein modulates transcriptional activity of the estrogen receptor. [provided by RefSeq, Jul 2008]

GeneCards Summary for NRIP1 Gene

NRIP1 (Nuclear Receptor Interacting Protein 1) is a Protein Coding gene. Diseases associated with NRIP1 include granuloma inguinale. Among its related pathways are GPCR Pathway and AHR Pathway (Qiagen). GO annotations related to this gene include transcription coactivator activity and histone deacetylase binding.

UniProtKB/Swiss-Prot for NRIP1 Gene

  • Modulates transcriptional activation by steroid receptors such as NR3C1, NR3C2 and ESR1. Also modulates transcriptional repression by nuclear hormone receptors. Positive regulator of the circadian clock gene expression: stimulates transcription of ARNTL/BMAL1, CLOCK and CRY1 by acting as a coactivator for RORA and RORC.

Gene Wiki entry for NRIP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NRIP1 Gene

Genomics for NRIP1 Gene

Genomic Location for NRIP1 Gene

Start:
14,961,235 bp from pter
End:
15,065,000 bp from pter
Size:
103,766 bases
Orientation:
Minus strand

Genomic View for NRIP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NRIP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NRIP1 Gene

Regulatory Elements for NRIP1 Gene

Proteins for NRIP1 Gene

  • Protein details for NRIP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P48552-NRIP1_HUMAN
    Recommended name:
    Nuclear receptor-interacting protein 1
    Protein Accession:
    P48552
    Secondary Accessions:
    • Q8IWE8

    Protein attributes for NRIP1 Gene

    Size:
    1158 amino acids
    Molecular mass:
    126942 Da
    Quaternary structure:
    • Interacts with RARA and RXRB homodimers and RARA/RXRB heterodimers in the presence of ligand. Interacts with HDAC1 and HDAC3 via its N-terminal domain. Interacts with NR2C1 (sumoylated form and via the ligand-binding domain); the interaction results in promoting the repressor activity of NR2C1 (By similarity). Interacts with CTBP1, CTBP2, ESR1, HDAC1, HDAC2, HDAC5, HDAC6, NR2C2, NR3C1, NR3C2, YWHAH, JUN and FOS. Found in a complex with both NR3C1 and YWHAH. Interacts with ZNF366. Interacts with RORA.

    Three dimensional structures from OCA and Proteopedia for NRIP1 Gene

neXtProt entry for NRIP1 Gene

Proteomics data for NRIP1 Gene at MOPED

Post-translational modifications for NRIP1 Gene

  • Acetylation regulates its nuclear translocation and corepressive activity (By similarity). Acetylation abolishes interaction with CTBP1. Phosphorylation enhances interaction with YWHAH.
  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys1115

Other Protein References for NRIP1 Gene

No data available for DME Specific Peptides for NRIP1 Gene

Domains for NRIP1 Gene

Protein Domains for NRIP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NRIP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P48552

UniProtKB/Swiss-Prot:

NRIP1_HUMAN
Domain:
  • Contains 9 Leu-Xaa-Xaa-Leu-Leu (LXXLL) motifs, which have different affinities for nuclear receptors. The C-terminal LTKTNPILYYMLQK motif is required for ligand-dependent interaction with RAAR and RXRB homodimers and heterodimers, for the corepressor activity, and for the formation of an HDAC3 complex with RARA/RXRB (By similarity). Contains at least four autonomous repression domains (RD1-4). RD1 functions via a histone deacetylase (HDAC)-independent mechanism, whereas RD2, RD3 and RD4 can function by HDAC-dependent or independent mechanisms, depending on cell type. RD2 is dependent on CTBP binding.:
    • P48552
genes like me logo Genes that share domains with NRIP1: view

No data available for Gene Families for NRIP1 Gene

Function for NRIP1 Gene

Molecular function for NRIP1 Gene

GENATLAS Biochemistry: nuclear receptor interacting protein,widely expressed,modulating transcriptional activation by the estrogen receptor
UniProtKB/Swiss-Prot Function: Modulates transcriptional activation by steroid receptors such as NR3C1, NR3C2 and ESR1. Also modulates transcriptional repression by nuclear hormone receptors. Positive regulator of the circadian clock gene expression: stimulates transcription of ARNTL/BMAL1, CLOCK and CRY1 by acting as a coactivator for RORA and RORC.
UniProtKB/Swiss-Prot Induction: Expressed in a circadian manner in the liver (at protein level).

Gene Ontology (GO) - Molecular Function for NRIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001046 core promoter sequence-specific DNA binding IDA 21628546
GO:0003713 transcription coactivator activity NAS 15572661
GO:0003714 transcription corepressor activity IDA 10364267
GO:0005102 receptor binding --
GO:0005515 protein binding IPI 1266503
genes like me logo Genes that share ontologies with NRIP1: view
genes like me logo Genes that share phenotypes with NRIP1: view

miRNA for NRIP1 Gene

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for NRIP1 Gene

Localization for NRIP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NRIP1 Gene

Nucleus. Note=Localized to discrete foci and redistributes to larger nuclear domains upon binding to ligand-bound NR3C1.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NRIP1 Gene COMPARTMENTS Subcellular localization image for NRIP1 gene
Compartment Confidence
nucleus 5
cytosol 2
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for NRIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000118 histone deacetylase complex IEA --
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
GO:0005730 nucleolus IDA --
GO:0016607 nuclear speck IEA --
genes like me logo Genes that share ontologies with NRIP1: view

Pathways for NRIP1 Gene

genes like me logo Genes that share pathways with NRIP1: view

Gene Ontology (GO) - Biological Process for NRIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IDA 10364267
GO:0001543 ovarian follicle rupture IEA --
GO:0006351 transcription, DNA-templated IEA --
GO:0006357 regulation of transcription from RNA polymerase II promoter --
GO:0007623 circadian rhythm TAS --
genes like me logo Genes that share ontologies with NRIP1: view

Compounds for NRIP1 Gene

(1) Drugbank Compounds for NRIP1 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
4-HYDROXY-N'-(4-ISOPROPYLBENZYL)BENZOHYDRAZIDE
target

(13) Novoseek inferred chemical compound relationships for NRIP1 Gene

Compound -log(P) Hits PubMed IDs
retinoid 68 18
retinoic acid 61 57
estrogen 57.6 29
steroid 37.5 10
4-hydroxytamoxifen 37.1 1
genes like me logo Genes that share compounds with NRIP1: view

Transcripts for NRIP1 Gene

Unigene Clusters for NRIP1 Gene

Nuclear receptor interacting protein 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NRIP1 Gene

No ASD Table

Relevant External Links for NRIP1 Gene

GeneLoc Exon Structure for
NRIP1
ECgene alternative splicing isoforms for
NRIP1

Expression for NRIP1 Gene

mRNA expression in normal human tissues for NRIP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NRIP1 Gene

This gene is overexpressed in Muscle - Skeletal (4.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for NRIP1 Gene

SOURCE GeneReport for Unigene cluster for NRIP1 Gene Hs.155017

genes like me logo Genes that share expressions with NRIP1: view

No data available for mRNA Expression by UniProt/SwissProt for NRIP1 Gene

Orthologs for NRIP1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for NRIP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NRIP1 35
  • 99.34 (n)
  • 99.05 (a)
NRIP1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia NRIP1 35
  • 88.09 (n)
  • 87.8 (a)
NRIP1 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NRIP1 35
  • 80.08 (n)
  • 80.54 (a)
NRIP1 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nrip1 35
  • 83.12 (n)
  • 84.7 (a)
Nrip1 16
Nrip1 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NRIP1 36
  • 58 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NRIP1 36
  • 69 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nrip1 35
  • 83.9 (n)
  • 85.74 (a)
chicken
(Gallus gallus)
Aves NRIP1 35
  • 76.09 (n)
  • 71.22 (a)
NRIP1 36
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NRIP1 36
  • 61 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC68665 35
tropical clawed frog
(Silurana tropicalis)
Amphibia nrip1 35
  • 61 (n)
  • 52.14 (a)
Str.17425 35
zebrafish
(Danio rerio)
Actinopterygii nrip1a 36
  • 34 (a)
OneToMany
nrip1b 35
  • 50.51 (n)
  • 42.84 (a)
nrip1b 36
  • 35 (a)
OneToMany
Species with no ortholog for NRIP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NRIP1 Gene

ENSEMBL:
Gene Tree for NRIP1 (if available)
TreeFam:
Gene Tree for NRIP1 (if available)

Paralogs for NRIP1 Gene

Selected SIMAP similar genes for NRIP1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with NRIP1: view

No data available for Paralogs for NRIP1 Gene

Variants for NRIP1 Gene

Sequence variations from dbSNP and Humsavar for NRIP1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
rs881996 -- 14,978,433(+) AAAAG(G/T)TATCT intron-variant
rs909385 -- 14,976,936(+) TTGTG(A/T)CCATG intron-variant
rs909386 -- 14,977,624(+) CATTC(A/T)AGTGT intron-variant
rs909387 -- 14,978,164(+) AGACA(C/T)TCCTG intron-variant
rs909388 -- 14,979,127(+) TTAAC(A/C)AATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NRIP1 Gene

Variant ID Type Subtype PubMed ID
nsv834048 CNV Gain 17160897
esv268950 CNV Insertion 20981092
dgv4680n71 CNV Loss 21882294
nsv517307 CNV Gain 19592680
nsv527611 CNV Loss 19592680
esv2565555 CNV Insertion 19546169
esv2723186 CNV Deletion 23290073
esv1174346 CNV Deletion 17803354
esv22747 CNV Loss 19812545
esv1064466 CNV Deletion 17803354
esv1672496 CNV Deletion 17803354
esv2723187 CNV Deletion 23290073
esv2664247 CNV Deletion 23128226

Relevant External Links for NRIP1 Gene

HapMap Linkage Disequilibrium report
NRIP1
Human Gene Mutation Database (HGMD)
NRIP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NRIP1 Gene

Disorders for NRIP1 Gene

(1) MalaCards Diseases for NRIP1 Gene

Search for NRIP1 Gene in MalaCards »

(1) University of Copenhagen DISEASES for NRIP1 Gene

(9) Novoseek inferred disease relationships for NRIP1 Gene

Disease -log(P) Hits PubMed IDs
carcinoma embryonal 44.5 8
breast cancer 21.1 10
necrosis 17.5 5
down syndrome 0 1
ovarian cancer 0 1

Relevant External Links for NRIP1

Genetic Association Database (GAD)
NRIP1
Human Genome Epidemiology (HuGE) Navigator
NRIP1
genes like me logo Genes that share disorders with NRIP1: view

No data available for UniProtKB/Swiss-Prot for NRIP1 Gene

Publications for NRIP1 Gene

  1. Nuclear factor RIP140 modulates transcriptional activation by the estrogen receptor. (PMID: 7641693) Cavailles V. … Parker M.G. (EMBO J. 1995) 2 3 4 23
  2. Preliminary molecular genetic analysis of the receptor interacting protein 140 (RIP140) in women affected by endometriosis. (PMID: 16131398) Caballero V. … Ruiz A. (J. Exp. Clin. Assist. Reprod. 2005) 3 4 23 48
  3. Characterization of four autonomous repression domains in the corepressor receptor interacting protein 140. (PMID: 14736873) Christian M. … Parker M.G. (J. Biol. Chem. 2004) 3 4 23
  4. Multiple domains of the receptor-interacting protein 140 contribute to transcription inhibition. (PMID: 15060175) Castet A. … Cavailles V. (Nucleic Acids Res. 2004) 3 4 23
  5. Localisation of receptor interacting protein 140 (RIP140) within 100 kb of D21S13 on 21q11, a gene-poor region of the human genome. (PMID: 9521594) Katsanis N. … Fisher E.M. (Hum. Genet. 1998) 2 3 23

Products for NRIP1 Gene

Sources for NRIP1 Gene

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