Aliases for CHD9 Gene
Aliases for CHD9 Gene
- Chromodomain Helicase DNA Binding Protein 9 2 3 5
- Peroxisomal Proliferator-Activated Receptor A-Interacting Complex 320 KDa Protein 3 4
- PPAR-Alpha-Interacting Complex Protein 320 KDa 3 4
- Chromatin-Related Mesenchymal Modulator 3 4
- ATP-Dependent Helicase CHD9 3 4
- Kismet Homolog 2 3 4
- PRIC320 3 4
- CHD-9 3 4
- CReMM 3 4
- KISH2 3 4
- Chromodomain-Helicase-DNA-Binding Protein 9 3
External Ids for CHD9 Gene
- HGNC: 25701
- Entrez Gene: 80205
- Ensembl: ENSG00000177200
- OMIM: 616936
- UniProtKB: Q3L8U1
Previous GeneCards Identifiers for CHD9 Gene
- GC16P051646
- GC16P051747
- GC16P038976
Summaries for CHD9 Gene
GeneCards Summary for CHD9 Gene
CHD9 (Chromodomain Helicase DNA Binding Protein 9) is a Protein Coding gene. Among its related pathways are Organelle biogenesis and maintenance and Gene Expression. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and helicase activity. An important paralog of this gene is CHD7.
UniProtKB/Swiss-Prot for CHD9 Gene
-
Acts as a transcriptional coactivator for PPARA and possibly other nuclear receptors. Proposed to be a ATP-dependent chromatin remodeling protein. Has DNA-dependent ATPase activity and binds to A/T-rich DNA. Associates with A/T-rich regulatory regions in promoters of genes that participate in the differentiation of progenitors during osteogenesis (By similarity).
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHD9 Gene
Genomics for CHD9 Gene
GeneHancer (GH) Regulatory Elements for CHD9 Gene
Promoters and enhancers for CHD9 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around CHD9 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for CHD9 Gene
Genomic Locations for CHD9 Gene
- chr16:53,054,998-53,329,150
- (GRCh38/hg38)
- Size:
- 274,153 bases
- Orientation:
- Plus strand
- chr16:53,088,945-53,363,062
- (GRCh37/hg19)
Genomic View for CHD9 Gene
Genes around CHD9 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 16q12.2 by Ensembl
- 16q12.2 by Entrez Gene
- 16q12.2 by HGNC
CHD9 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CHD9 Gene
Proteins for CHD9 Gene
-
Protein details for CHD9 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q3L8U1-CHD9_HUMAN
- Recommended name:
- Chromodomain-helicase-DNA-binding protein 9
- Protein Accession:
- Q3L8U1
- B2RTU2
- B9ZVQ0
- O15025
- Q1WF12
- Q6DTK9
- Q9H9V7
- Q9UHM2
Protein attributes for CHD9 Gene
- Size:
- 2897 amino acids
- Molecular mass:
- 326022 Da
- Quaternary structure:
-
- Interacts with PPARA. Probably interacts with ESR1 and NR1I3.
- SequenceCaution:
-
- Sequence=AAF24170.1; Type=Erroneous translation; Note=Wrong choice of frame.; Evidence={ECO:0000305}; Sequence=BAB14112.1; Type=Erroneous initiation; Evidence={ECO:0000305};
Protein Expression for CHD9 Gene
Selected DME Specific Peptides for CHD9 Gene
- Q3L8U1:
-
- VLIFSQMVR
- PKQKRHRCRNPNKLD
- PVPRGRKGK
- GAEEKIL
- ILKPMMLRRLK
- IFDSDWNP
- KASFVAS
- RRGRRKNVEG
- MCRRVCR
- DEMGLGKT
- SRQMIQQYEM
- AVLQSMSG
- FCEEDIDQIL
- TITIESEG
- DFYRVVSTFG
- DEAHRLK
- TGTPLQN
- ETIIEVELT
- KDKRIQQKIKRFK
- LDILEDY
- ECFRVEKNLL
- MGLGKTIQ
- DSDWNPQ
- QKKYYRAILE
- QNLQNLQSLQ
- RADPALCFLE
- ITTFEMIL
- FNPDYVE
- SRRGRRPKS
- MLRRLKEDV
- AGGLGINL
- RCHRIGQ
- KAVKVYRL
- KQEKANRI
- YLVKWCSLPYE
- WPKDRVMINRLD
- PITEERASRTLYR
- CNKVLLRVRMLY
- NWEREFRTWT
- LLIGVFK
- NTMMELRKCCNHPYLI
- EDPEYKP
- QQRWTRRE
Post-translational modifications for CHD9 Gene
- Phosphorylated on serine and tyrosine residues.
Other Protein References for CHD9 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
-
- NP_001295248.1
- NP_001339056.1
- NP_001339085.1
- NP_001339086.1
- NP_001339087.1
- NP_079410.4
- XP_005256225.1
- XP_005256226.1
- XP_005256229.1
- XP_005256233.1
- XP_006721344.1
- XP_006721346.1
- XP_011521649.1
- XP_016879207.1
- XP_016879208.1
- XP_016879209.1
- XP_016879210.1
- XP_016879211.1
- XP_016879212.1
- XP_016879213.1
- XP_016879214.1
- XP_016879215.1
- XP_016879216.1
- XP_016879217.1
Antibody Products
- Novus Biologicals Antibodies for CHD9
- Invitrogen Antibodies for CHD9
- Search GeneTex for Antibodies for CHD9
-
Santa Cruz Biotechnology (SCBT) Antibodies for CHD9
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CHD9
- Origene Custom Protein Services for CHD9
- Novus Biologicals proteins for CHD9
- antibodies-online: Search results for available CHD9 related products ranked by validation data
- Search GeneTex for Proteins for CHD9
Assay Products
- antibodies-online: Search results for 1 available CHD9 Elisa Kits ranked by validation data
- Compare Top CHD9 Elisa Kits
-
Recommended
Domains & Families for CHD9 Gene
Gene Families for CHD9 Gene
- Human Protein Atlas (HPA):
-
- Enzymes
- Plasma proteins
- Predicted intracellular proteins
Protein Domains for CHD9 Gene
Suggested Antigen Peptide Sequences for CHD9 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q3L8U1- Family:
-
- Belongs to the SNF2/RAD54 helicase family.
Function for CHD9 Gene
Molecular function for CHD9 Gene
- UniProtKB/Swiss-Prot CatalyticActivity:
- ATP + H(2)O = ADP + phosphate.
- UniProtKB/Swiss-Prot Function:
- Acts as a transcriptional coactivator for PPARA and possibly other nuclear receptors. Proposed to be a ATP-dependent chromatin remodeling protein. Has DNA-dependent ATPase activity and binds to A/T-rich DNA. Associates with A/T-rich regulatory regions in promoters of genes that participate in the differentiation of progenitors during osteogenesis (By similarity).
Enzyme Numbers (IUBMB) for CHD9 Gene
Phenotypes From GWAS Catalog for CHD9 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | -- |
| GO:0004386 | helicase activity | IEA | -- |
| GO:0005524 | ATP binding | IEA | -- |
| GO:0016787 | hydrolase activity | IEA | -- |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | IEA | -- |
Phenotypes for CHD9 Gene
- MGI mutant phenotypes for CHD9:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for CHD9:
Animal Models for CHD9 Gene
- MGI Knock Outs for CHD9:
-
- Chd9 tm1a(EUCOMM)Wtsi
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CHD9
-
-
ViGene Biosciences lentiviral particle packaged cDNA for CHD9 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CHD9 gene
- Search ViGene Biosciences for CHD9
CRISPR Products
-
OriGene CRISPR knockouts for CHD9
- genomics-online: gRNA clones - Search results for 58 available CHD9 gene related products
- Overview of 58 available CHD9 gene related products
- Applied Biological Materials CRISPR for CHD9
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for CHD9
- GenScript: Design CRISPR guide RNA sequences for CHD9
miRNA for CHD9 Gene
- miRTarBase miRNAs that target CHD9
-
- hsa-mir-210-3p (MIRT003181)
- hsa-mir-155-5p (MIRT020560)
- hsa-mir-7-5p (MIRT025670)
- hsa-mir-26b-5p (MIRT028901)
- hsa-let-7e-5p (MIRT051555)
- hsa-mir-17-5p (MIRT074888)
- hsa-mir-19a-3p (MIRT074889)
- hsa-mir-19b-3p (MIRT074890)
- hsa-mir-20a-5p (MIRT074891)
- hsa-mir-93-5p (MIRT074892)
- hsa-mir-106b-5p (MIRT074897)
- hsa-mir-20b-5p (MIRT074900)
- hsa-mir-519d-3p (MIRT074905)
- hsa-mir-22-3p (MIRT143443)
- hsa-mir-181a-5p (MIRT143445)
- hsa-mir-181b-5p (MIRT143446)
- hsa-mir-181c-5p (MIRT143447)
- hsa-mir-376a-5p (MIRT143452)
- hsa-mir-181d-5p (MIRT143461)
- hsa-mir-376a-2-5p (MIRT143462)
- hsa-mir-944 (MIRT143466)
- hsa-mir-664a-3p (MIRT143469)
- hsa-mir-2052 (MIRT143470)
- hsa-mir-1193 (MIRT143473)
- hsa-mir-4262 (MIRT143475)
- hsa-mir-3607-3p (MIRT143477)
- hsa-mir-3668 (MIRT143480)
- hsa-mir-3686 (MIRT143481)
- hsa-mir-3935 (MIRT143483)
- hsa-mir-4663 (MIRT143486)
- hsa-mir-4682 (MIRT143487)
- hsa-mir-8077 (MIRT143493)
- hsa-mir-433-3p (MIRT143520)
- hsa-mir-7154-5p (MIRT143558)
- hsa-mir-34b-3p (MIRT375371)
- hsa-mir-6809-3p (MIRT659526)
- hsa-mir-6833-3p (MIRT659527)
- hsa-mir-4768-5p (MIRT659528)
- hsa-mir-6873-3p (MIRT659529)
- hsa-mir-6794-3p (MIRT659530)
- hsa-mir-627-3p (MIRT659531)
- hsa-mir-4639-3p (MIRT659532)
- hsa-mir-342-3p (MIRT659533)
- hsa-mir-548c-3p (MIRT659534)
- hsa-mir-3163 (MIRT669041)
- hsa-mir-628-5p (MIRT704712)
- hsa-mir-7641 (MIRT704713)
- hsa-mir-3171 (MIRT704714)
- hsa-mir-139-5p (MIRT704715)
miRNA Products
- Search ViGene Biosciences for CHD9
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for CHD9
- Browse OriGene Inhibitory RNA Products For CHD9
- genomics-online: shRNA clones - Search results for 58 available CHD9 gene related products
- Overview of 58 available CHD9 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for CHD9 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CHD9
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CHD9
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for CHD9
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for CHD9
-
ViGene Biosciences adenoviral particle packaged cDNA for CHD9 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for CHD9 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CHD9 gene
No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CHD9 Gene
Localization for CHD9 Gene
Subcellular locations from UniProtKB/Swiss-Prot for CHD9 Gene
- Cytoplasm. Nucleus.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytosol | 3 |
| plasma membrane | 2 |
- Cytosol (2)
- Plasma membrane (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IEA | -- |
| GO:0005654 | nucleoplasm | TAS | -- |
| GO:0005737 | cytoplasm | IEA | -- |
Pathways & Interactions for CHD9 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | BMAL1-CLOCK,NPAS2 activates circadian gene expression |
.68
|
|
| 2 | Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha) | ||
| 3 | Regulation of cholesterol biosynthesis by SREBP (SREBF) | ||
| 4 | Gene Expression |
.48
|
|
| 5 | Metabolism |
.37
|
|
Pathways by source for CHD9 Gene
Interacting Proteins for CHD9 Gene
Selected Interacting proteins:
ENSP00000455307
Q3L8U1-CHD9_HUMAN
for CHD9 Gene via
STRING
UniProtKB
IID
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006351 | transcription, DNA-templated | IEA | -- |
| GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
| GO:0016569 | covalent chromatin modification | IEA | -- |
| GO:0019216 | regulation of lipid metabolic process | TAS | -- |
No data available for SIGNOR curated interactions for CHD9 Gene
Drugs & Compounds for CHD9 Gene
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| ADP |
|
Full agonist, Agonist | 58-64-0 |
|
Transcripts for CHD9 Gene
mRNA/cDNA for CHD9 Gene
- (25) REFSEQ mRNAs :
- (17) Additional mRNA sequences :
- (240) Selected AceView cDNA sequences:
- (21) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CHD9 Gene
CRISPR Products
-
OriGene CRISPR knockouts for CHD9
- genomics-online: gRNA clones - Search results for 58 available CHD9 gene related products
- Overview of 58 available CHD9 gene related products
- Applied Biological Materials CRISPR for CHD9
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for CHD9
- GenScript: Design CRISPR guide RNA sequences for CHD9
miRNA Products
- Search ViGene Biosciences for CHD9
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for CHD9
- Browse OriGene Inhibitory RNA Products For CHD9
- genomics-online: shRNA clones - Search results for 58 available CHD9 gene related products
- Overview of 58 available CHD9 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for CHD9 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CHD9
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CHD9
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for CHD9
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12a | · | 12b | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17a | · | 17b | ^ | 18 | ^ | 19a | · | 19b | ^ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP2: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP3: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP4: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP5: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP6: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP7: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP8: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP9: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
| SP10: | - | - |
| ExUns: | 20 | ^ | 21 | ^ | 22 | ^ | 23a | · | 23b | ^ | 24 | ^ | 25 | ^ | 26 | ^ | 27 | ^ | 28 | ^ | 29 | ^ | 30a | · | 30b | ^ | 31 | ^ | 32 | ^ | 33 | ^ | 34 | ^ | 35 | ^ | 36a | · | 36b | ^ | 37 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | ||||||||||||||||||||||||||||||||||||||
| SP2: | |||||||||||||||||||||||||||||||||||||||||
| SP3: | |||||||||||||||||||||||||||||||||||||||||
| SP4: | |||||||||||||||||||||||||||||||||||||||||
| SP5: | |||||||||||||||||||||||||||||||||||||||||
| SP6: | |||||||||||||||||||||||||||||||||||||||||
| SP7: | |||||||||||||||||||||||||||||||||||||||||
| SP8: | |||||||||||||||||||||||||||||||||||||||||
| SP9: | |||||||||||||||||||||||||||||||||||||||||
| SP10: |
Expression for CHD9 Gene
This gene is overexpressed in Pancreatic juice (23.9), Heart (11.9), Prostate (10.0), Retina (8.5), and Peripheral blood mononuclear cells (6.8).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CHD9 Gene
NURSA nuclear receptor signaling pathways regulating expression of CHD9 Gene:
CHD9SOURCE GeneReport for Unigene cluster for CHD9 Gene:
Hs.59159mRNA Expression by UniProt/SwissProt for CHD9 Gene:
Q3L8U1-CHD9_HUMAN
Tissue specificity:
Widely expressed at low levels. In bone marrow, expression is restricted to osteoprogenitor cells adjacent to mature osteoblasts.
Evidence on tissue expression from TISSUES for CHD9 Gene
- Lung(4.8)
- Nervous system(4.7)
- Bone(4.5)
- Adrenal gland(4.2)
- Kidney(2)
Primer Products
-
OriGene qPCR primer pairs for CHD9
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHD9 Gene
Orthologs for CHD9 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | CHD9 33 34 |
|
||
| dog (Canis familiaris) |
Mammalia | CHD9 33 34 |
|
||
| cow (Bos Taurus) |
Mammalia | CHD9 33 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | -- 34 |
|
OneToMany | |
| -- 34 |
|
OneToMany | |||
| mouse (Mus musculus) |
Mammalia | Chd9 33 16 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | CHD9 34 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Chd9 33 |
|
||
| chicken (Gallus gallus) |
Aves | CHD9 33 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | CHD9 34 |
|
OneToOne | |
| zebrafish (Danio rerio) |
Actinopterygii | chd9 33 34 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | kis 34 |
|
OneToMany | |
| worm (Caenorhabditis elegans) |
Secernentea | chd-7 34 |
|
OneToMany |
- Species where no ortholog for CHD9 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
Paralogs for CHD9 Gene
(11) SIMAP similar genes for CHD9 Gene using alignment to 10 proteins:
Variants for CHD9 Gene
| SNP ID | Clin | Chr 16 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000004960 | -- | 53,254,973(+) | TTTTTTTT/TTTTTTTTT | intron_variant | |
| rs1000024295 | -- | 53,129,311(+) | T/G | genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant | |
| rs1000031390 | -- | 53,093,956(+) | A/G | genic_upstream_transcript_variant, intron_variant | |
| rs1000069863 | -- | 53,076,354(+) | C/T | genic_upstream_transcript_variant, intron_variant | |
| rs1000076088 | -- | 53,124,191(+) | T/G | genic_upstream_transcript_variant, intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv2979n100 | CNV | loss | 25217958 |
| dgv521e214 | CNV | loss | 21293372 |
| esv1370771 | CNV | insertion | 17803354 |
| esv21460 | CNV | loss | 19812545 |
| esv2671644 | CNV | deletion | 23128226 |
| esv3582202 | CNV | loss | 25503493 |
| esv3582203 | CNV | loss | 25503493 |
| esv3638643 | CNV | gain | 21293372 |
| nsv1063647 | CNV | loss | 25217958 |
| nsv1066719 | CNV | loss | 25217958 |
| nsv476217 | CNV | novel sequence insertion | 20440878 |
| nsv510419 | OTHER | sequence alteration | 20534489 |
| nsv572617 | CNV | loss | 21841781 |
| nsv827652 | CNV | loss | 20364138 |
| nsv833232 | CNV | loss | 17160897 |
| nsv833233 | CNV | gain | 17160897 |
| nsv9443 | CNV | loss | 18304495 |
Residual Variation Intolerance Score:
0.566% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
7.75;
83.22% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for CHD9 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CHD9 Gene
Disorders for CHD9 Gene
Additional Disease Information for CHD9
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for CHD9 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHD9 Gene
Publications for CHD9 Gene
- Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9205841) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 1997) 2 3 4 58
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen JV … Mann M (Cell 2006) 3 4 58
- PRIC320, a transcription coactivator, isolated from peroxisome proliferator-binding protein complex. (PMID: 16554032) Surapureddi S … Reddy JK (Biochemical and biophysical research communications 2006) 3 4 58
- Characterization and functional analysis of CReMM, a novel chromodomain helicase DNA-binding protein. (PMID: 16095617) Shur I … Benayahu D (Journal of molecular biology 2005) 3 4 58
Products for CHD9 Gene
- Browse R&D Systems for Antibodies
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- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CHD9
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- OriGene qPCR primer pairs for CHD9
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- GenScript: Next-day shipping of latest version cDNA ORF clones for CHD9 in any vector
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- GenScript: Design CRISPR guide RNA sequences for CHD9
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for CHD9
- Browse Sino Biological cDNA Clones
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- Sino Biological Transfection Reagent
- Sino Biological Anti-His Tag Antibody
- Novus Biologicals Antibodies for CHD9
- Novus Biologicals proteins for CHD9
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Browse Antibodies at Cloud-Clone Corp.
- Browse Proteins at Cloud-Clone Corp.
- Browse Assay Kits at Cloud-Clone Corp.
- Browse Knockouts at Cloud-Clone Corp.
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- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Invitrogen Antibodies for CHD9
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Cyagen custom Knockout/knockin (KOKI) mouse models for CHD9
- VectorBuilder custom plasmid, inducible vectors for CHD9
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CHD9
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 13 available CHD9 Antibodies ranked by validation data
- Compare Top CHD9 Antibodies
- antibodies-online: Search results for 1 available CHD9 Elisa Kits ranked by validation data
- Compare Top CHD9 Elisa Kits
- Recommended
- antibodies-online: Search results for available CHD9 related products ranked by validation data
- Search GeneTex for Antibodies for CHD9
- Search GeneTex for Proteins for CHD9
- ViGene Biosciences adenoviral particle packaged cDNA for CHD9 gene
- ViGene Biosciences lentiviral particle packaged cDNA for CHD9 gene
- ViGene Biosciences ready-to-package AAV shRNAs for CHD9 gene
- Search ViGene Biosciences for CHD9
- Santa Cruz Biotechnology (SCBT) Antibodies for CHD9
- Search Santa Cruz Biotechnology (SCBT) for CHD9 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for CHD9
- Horizon Cell Lines for CHD9
- genomics-online: cdna clones - Search results for 58 available CHD9 gene related products
- Overview of 58 available CHD9 gene related products
- orf clones - Search results for 58 available CHD9 gene related products
- Overview of 58 available CHD9 gene related products
- genomics-online: gRNA clones - Search results for 58 available CHD9 gene related products
- Overview of 58 available CHD9 gene related products
- genomics-online: primer clones - Search results for 58 available CHD9 gene related products
- Overview of 58 available CHD9 gene related products
- genomics-online: shRNA clones - Search results for 58 available CHD9 gene related products
- Overview of 58 available CHD9 gene related products
Sources for CHD9 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew