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Aliases for CPED1 Gene

Aliases for CPED1 Gene

  • Cadherin-Like And PC-Esterase Domain Containing 1 2 3
  • C7orf58 3 4
  • Cadherin-Like And PC-Esterase Domain-Containing Protein 1 3
  • Chromosome 7 Open Reading Frame 58 2

External Ids for CPED1 Gene

Previous Symbols for CPED1 Gene

  • C7orf58

Summaries for CPED1 Gene

GeneCards Summary for CPED1 Gene

CPED1 (Cadherin-Like And PC-Esterase Domain Containing 1) is a Protein Coding gene.

Gene Wiki entry for CPED1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPED1 Gene

Genomics for CPED1 Gene

Genomic Location for CPED1 Gene

Start:
120,988,677 bp from pter
End:
121,297,444 bp from pter
Size:
308,768 bases
Orientation:
Plus strand

Genomic View for CPED1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CPED1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPED1 Gene

No data available for Regulatory Elements for CPED1 Gene

Proteins for CPED1 Gene

  • Protein details for CPED1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A4D0V7-CPED1_HUMAN
    Recommended name:
    Cadherin-like and PC-esterase domain-containing protein 1
    Protein Accession:
    A4D0V7
    Secondary Accessions:
    • A8K1R3
    • Q6UXT1
    • Q86T76
    • Q86T84
    • Q8N2T5
    • Q96NC9

    Protein attributes for CPED1 Gene

    Size:
    1026 amino acids
    Molecular mass:
    117491 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH30538.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for CPED1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CPED1 Gene

Proteomics data for CPED1 Gene at MOPED

Post-translational modifications for CPED1 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn251, Asn404, Asn413, Asn737, Asn791, and Asn985

No data available for DME Specific Peptides for CPED1 Gene

Domains for CPED1 Gene

Protein Domains for CPED1 Gene

Graphical View of Domain Structure for InterPro Entry

A4D0V7

UniProtKB/Swiss-Prot:

CPED1_HUMAN
Family:
  • Belongs to the PC-esterase family.:
    • A4D0V7
genes like me logo Genes that share domains with CPED1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for CPED1 Gene

Function for CPED1 Gene

miRNA for CPED1 Gene

miRTarBase miRNAs that target CPED1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for CPED1 Gene

Localization for CPED1 Gene

Gene Ontology (GO) - Cellular Components for CPED1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IDA --
genes like me logo Genes that share ontologies with CPED1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for CPED1 Gene

Pathways for CPED1 Gene

SuperPathways for CPED1 Gene

No Data Available

Interacting Proteins for CPED1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000309772%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000309772 for CPED1 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for CPED1 Gene

None

No data available for Pathways by source for CPED1 Gene

Transcripts for CPED1 Gene

Unigene Clusters for CPED1 Gene

Cadherin-like and PC-esterase domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CPED1 Gene

No ASD Table

Relevant External Links for CPED1 Gene

GeneLoc Exon Structure for
CPED1
ECgene alternative splicing isoforms for
CPED1

Expression for CPED1 Gene

mRNA expression in normal human tissues for CPED1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CPED1 Gene

This gene is overexpressed in Artery - Tibial (7.9), Artery - Coronary (4.5), and Artery - Aorta (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CPED1 Gene

SOURCE GeneReport for Unigene cluster for CPED1 Gene Hs.189652

genes like me logo Genes that share expressions with CPED1: view

No data available for mRNA Expression by UniProt/SwissProt for CPED1 Gene

Orthologs for CPED1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CPED1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CPED1 35
  • 99.25 (n)
  • 98.83 (a)
CPED1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CPED1 35
  • 86.88 (n)
  • 81.84 (a)
CPED1 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CPED1 35
  • 84.78 (n)
  • 80.36 (a)
CPED1 36
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cped1 35
  • 80.64 (n)
  • 74.93 (a)
Cped1 16
Cped1 36
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CPED1 36
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CPED1 36
  • 63 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cped1 35
  • 80.67 (n)
  • 74.24 (a)
chicken
(Gallus gallus)
Aves CPED1 35
  • 66.6 (n)
  • 57.93 (a)
CPED1 36
  • 55 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CPED1 36
  • 51 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cped1 35
  • 59.7 (n)
  • 52.14 (a)
zebrafish
(Danio rerio)
Actinopterygii cped1 35
  • 51.59 (n)
  • 42.44 (a)
cped1 36
  • 37 (a)
OneToOne
Species with no ortholog for CPED1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CPED1 Gene

ENSEMBL:
Gene Tree for CPED1 (if available)
TreeFam:
Gene Tree for CPED1 (if available)

Paralogs for CPED1 Gene

Selected SIMAP similar genes for CPED1 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for CPED1 Gene

genes like me logo Genes that share paralogs with CPED1: view

No data available for Paralogs for CPED1 Gene

Variants for CPED1 Gene

Sequence variations from dbSNP and Humsavar for CPED1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs41688 -- 120,992,952(+) GTATA(A/G)TATAT intron-variant
rs41689 -- 120,993,222(+) TAACA(C/G)TTTAA intron-variant
rs41690 -- 120,994,329(+) CGATA(C/T)CTTTC intron-variant
rs41691 -- 120,994,582(+) ATAGC(C/T)GGATA intron-variant
rs41692 -- 120,994,814(+) ACTGG(C/T)ATAAA intron-variant

Relevant External Links for CPED1 Gene

HapMap Linkage Disequilibrium report
CPED1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CPED1 Gene

Disorders for CPED1 Gene

No disorders were found for CPED1 Gene.

No data available for UniProtKB/Swiss-Prot for CPED1 Gene

Publications for CPED1 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Novel eukaryotic enzymes modifying cell-surface biopolymers. (PMID: 20056006) Anantharaman V. … Aravind L. (Biol. Direct 2010) 2 3
  4. A complex chromosome 7q rearrangement identified in a patient with mental retardation, anxiety disorder, and autistic features. (PMID: 20082467) Dauwerse J.G. … Hilhorst-Hofstee Y. (Am. J. Med. Genet. A 2010) 3
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3

Products for CPED1 Gene

Sources for CPED1 Gene

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