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Aliases for RPAP2 Gene

Aliases for RPAP2 Gene

  • RNA Polymerase II Associated Protein 2 2 3
  • C1orf82 3 4 6
  • RNA Polymerase II-Associated Protein 2 3 4
  • Putative RNA Polymerase II Subunit B1 CTD Phosphatase RPAP2 3
  • Chromosome 1 Open Reading Frame 82 2
  • EC 3.1.3.16 4
  • Rtr1 3

External Ids for RPAP2 Gene

Previous HGNC Symbols for RPAP2 Gene

  • C1orf82

Previous GeneCards Identifiers for RPAP2 Gene

  • GC01P092537
  • GC01P092764
  • GC01P090884

Summaries for RPAP2 Gene

GeneCards Summary for RPAP2 Gene

RPAP2 (RNA Polymerase II Associated Protein 2) is a Protein Coding gene. GO annotations related to this gene include CTD phosphatase activity.

UniProtKB/Swiss-Prot for RPAP2 Gene

  • Protein phosphatase that displays CTD phosphatase activity and regulates transcription of snRNA genes. Recognizes and binds phosphorylated Ser-7 of the C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit POLR2A, and mediates dephosphorylation of Ser-5 of the CTD, thereby promoting transcription of snRNA genes.

Gene Wiki entry for RPAP2 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPAP2 Gene

Genomics for RPAP2 Gene

Regulatory Elements for RPAP2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RPAP2 Gene

Start:
92,298,965 bp from pter
End:
92,402,056 bp from pter
Size:
103,092 bases
Orientation:
Plus strand

Genomic View for RPAP2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPAP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPAP2 Gene

Proteins for RPAP2 Gene

  • Protein details for RPAP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IXW5-RPAP2_HUMAN
    Recommended name:
    Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2
    Protein Accession:
    Q8IXW5
    Secondary Accessions:
    • C9JKB5
    • Q49AS7
    • Q9H8Y2

    Protein attributes for RPAP2 Gene

    Size:
    612 amino acids
    Molecular mass:
    69509 Da
    Quaternary structure:
    • Associates with the RNA polymerase II complex. Interacts with transcribing RNA polymerase II phosphorylated on Ser-7 on CTD.

    Alternative splice isoforms for RPAP2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RPAP2 Gene

Proteomics data for RPAP2 Gene at MOPED

Post-translational modifications for RPAP2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RPAP2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RPAP2 Gene

Domains for RPAP2 Gene

Protein Domains for RPAP2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RPAP2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IXW5

UniProtKB/Swiss-Prot:

RPAP2_HUMAN :
  • Q8IXW5
Domain:
  • The RTR1-type zinc finger mediates interactions with RNA polymerase II complex subunits.
Family:
  • Belongs to the RPAP2 family.
Similarity:
  • Contains 1 RTR1-type zinc finger.
genes like me logo Genes that share domains with RPAP2: view

No data available for Gene Families for RPAP2 Gene

Function for RPAP2 Gene

Molecular function for RPAP2 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
[a protein]-serine/threonine phosphate + H(2)O = [a protein]-serine/threonine + phosphate
UniProtKB/Swiss-Prot Function:
Protein phosphatase that displays CTD phosphatase activity and regulates transcription of snRNA genes. Recognizes and binds phosphorylated Ser-7 of the C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit POLR2A, and mediates dephosphorylation of Ser-5 of the CTD, thereby promoting transcription of snRNA genes.

Enzyme Numbers (IUBMB) for RPAP2 Gene

Gene Ontology (GO) - Molecular Function for RPAP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008420 CTD phosphatase activity IMP 22137580
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with RPAP2: view

Phenotypes for RPAP2 Gene

MGI mutant phenotypes for RPAP2:
inferred from 1 alleles
GenomeRNAi human phenotypes for RPAP2:
genes like me logo Genes that share phenotypes with RPAP2: view

Animal Model Products

CRISPR Products

miRNA for RPAP2 Gene

miRTarBase miRNAs that target RPAP2

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for RPAP2 Gene

Localization for RPAP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RPAP2 Gene

Cytoplasm. Nucleus. Note=Shuttles between the cytoplasm and the nucleus in a CRM1-dependent manner.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPAP2 Gene COMPARTMENTS Subcellular localization image for RPAP2 gene
Compartment Confidence
nucleus 5
cytosol 2
golgi apparatus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for RPAP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 22137580
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
GO:0016591 DNA-directed RNA polymerase II, holoenzyme IDA 22137580
genes like me logo Genes that share ontologies with RPAP2: view

Pathways for RPAP2 Gene

SuperPathways for RPAP2 Gene

No Data Available

Interacting Proteins for RPAP2 Gene

Selected Interacting proteins: Q8IXW5-RPAP2_HUMAN for RPAP2 Gene via I2D

Gene Ontology (GO) - Biological Process for RPAP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009301 snRNA transcription IMP 22137580
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IMP 22137580
genes like me logo Genes that share ontologies with RPAP2: view

No data available for Pathways by source for RPAP2 Gene

Transcripts for RPAP2 Gene

Unigene Clusters for RPAP2 Gene

RNA polymerase II associated protein 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RPAP2

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPAP2 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14
SP1: -
SP2: -
SP3:
SP4:

Relevant External Links for RPAP2 Gene

GeneLoc Exon Structure for
RPAP2
ECgene alternative splicing isoforms for
RPAP2

Expression for RPAP2 Gene

mRNA expression in normal human tissues for RPAP2 Gene

Protein differential expression in normal tissues for RPAP2 Gene

This gene is overexpressed in Testis (25.8), CD8 Tcells (23.6), and Blymphocyte (7.1).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for RPAP2 Gene

SOURCE GeneReport for Unigene cluster for RPAP2 Gene Hs.444421

genes like me logo Genes that share expressions with RPAP2: view

Expression partners for RPAP2 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPAP2 Gene

Orthologs for RPAP2 Gene

This gene was present in the common ancestor of animals.

Orthologs for RPAP2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RPAP2 35
  • 88.45 (n)
  • 84.49 (a)
RPAP2 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RPAP2 35
  • 89.55 (n)
  • 85.22 (a)
-- 36
  • 85 (a)
OneToMany
-- 36
  • 80 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rpap2 35
  • 77.65 (n)
  • 70.68 (a)
Rpap2 16
Rpap2 36
  • 70 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RPAP2 35
  • 99.56 (n)
  • 99.67 (a)
RPAP2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rpap2 35
  • 77.83 (n)
  • 71.52 (a)
oppossum
(Monodelphis domestica)
Mammalia RPAP2 36
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RPAP2 36
  • 52 (a)
OneToOne
chicken
(Gallus gallus)
Aves RPAP2 35
  • 64.34 (n)
  • 57.48 (a)
RPAP2 36
  • 56 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPAP2 36
  • 47 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rpap2 35
  • 58.47 (n)
  • 47.38 (a)
Str.16031 35
zebrafish
(Danio rerio)
Actinopterygii Dr.25701 35
rpap2 35
  • 54.36 (n)
  • 45.52 (a)
rpap2 36
  • 38 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG34183 36
  • 50 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 35 (a)
OneToOne
Species with no ortholog for RPAP2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RPAP2 Gene

ENSEMBL:
Gene Tree for RPAP2 (if available)
TreeFam:
Gene Tree for RPAP2 (if available)

Paralogs for RPAP2 Gene

Pseudogenes.org Pseudogenes for RPAP2 Gene

genes like me logo Genes that share paralogs with RPAP2: view

No data available for Paralogs for RPAP2 Gene

Variants for RPAP2 Gene

Sequence variations from dbSNP and Humsavar for RPAP2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs957157 -- 92,374,418(-) AAAGC(A/C)CCTAG intron-variant
rs1386586 -- 92,332,625(-) ATCAT(C/T)TTAAT intron-variant
rs1487536 -- 92,351,999(-) TACTC(A/C)TCTCC intron-variant
rs1487537 -- 92,333,594(-) CATGT(A/G)AACTT intron-variant
rs1809606 -- 92,359,369(-) GCACT(A/C)CAGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPAP2 Gene

Variant ID Type Subtype PubMed ID
esv2714684 CNV Deletion 23290073
nsv871508 CNV Gain 21882294
nsv830592 CNV Gain 17160897
nsv870667 CNV Loss 21882294
dgv266n71 CNV Loss 21882294

Relevant External Links for RPAP2 Gene

HapMap Linkage Disequilibrium report
RPAP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPAP2 Gene

Disorders for RPAP2 Gene

(1) University of Copenhagen DISEASES for RPAP2 Gene

genes like me logo Genes that share disorders with RPAP2: view

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships , Genatlas and External Links for RPAP2 Gene

Publications for RPAP2 Gene

  1. Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. (PMID: 17643375) Jeronimo C. … Coulombe B. (Mol. Cell 2007) 2 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Ser7 phosphorylation of the CTD recruits the RPAP2 Ser5 phosphatase to snRNA genes. (PMID: 22137580) Egloff S. … Murphy S. (Mol. Cell 2012) 3 4

Products for RPAP2 Gene

Sources for RPAP2 Gene

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