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Aliases for TNFAIP6 Gene

Aliases for TNFAIP6 Gene

  • TNF Alpha Induced Protein 6 2 3 5
  • TNF-Stimulated Gene 6 Protein 3 4
  • Hyaluronate-Binding Protein 3 4
  • TSG-6 3 4
  • TSG6 3 4
  • Tumor Necrosis Factor Alpha-Inducible Protein 6 3
  • Tumor Necrosis Factor-Stimulated Gene-6 Protein 3
  • Tumor Necrosis Factor, Alpha-Induced Protein 6 2
  • Tumor Necrosis Factor, Alpha Induced Protein 6 3
  • Tumor Necrosis Factor-Inducible Gene 6 Protein 3
  • Tumor Necrosis Factor Alpha-Induced Protein 6 4
  • TNF Alpha-Induced Protein 6 4

External Ids for TNFAIP6 Gene

Previous GeneCards Identifiers for TNFAIP6 Gene

  • GC02P149908
  • GC02P150743
  • GC02P152178
  • GC02P152416
  • GC02P152039
  • GC02P151922
  • GC02P144110

Summaries for TNFAIP6 Gene

Entrez Gene Summary for TNFAIP6 Gene

  • The protein encoded by this gene is a secretory protein that contains a hyaluronan-binding domain, and thus is a member of the hyaluronan-binding protein family. The hyaluronan-binding domain is known to be involved in extracellular matrix stability and cell migration. This protein has been shown to form a stable complex with inter-alpha-inhibitor (I alpha I), and thus enhance the serine protease inhibitory activity of I alpha I, which is important in the protease network associated with inflammation. This gene can be induced by proinflammatory cytokines such as tumor necrosis factor alpha and interleukin-1. Enhanced levels of this protein are found in the synovial fluid of patients with osteoarthritis and rheumatoid arthritis.[provided by RefSeq, Dec 2010]

GeneCards Summary for TNFAIP6 Gene

TNFAIP6 (TNF Alpha Induced Protein 6) is a Protein Coding gene. Diseases associated with TNFAIP6 include Arthritis and Rheumatoid Arthritis. Among its related pathways are Innate Immune System and ERK Signaling. GO annotations related to this gene include hyaluronic acid binding. An important paralog of this gene is VCAN.

UniProtKB/Swiss-Prot for TNFAIP6 Gene

  • Possibly involved in cell-cell and cell-matrix interactions during inflammation and tumorigenesis.

Gene Wiki entry for TNFAIP6 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNFAIP6 Gene

Genomics for TNFAIP6 Gene

Regulatory Elements for TNFAIP6 Gene

Enhancers for TNFAIP6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G151287 1.4 FANTOM5 ENCODE 42.7 -67.9 -67861 3.5 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 CBX5 ZNF207 FOS TNFAIP6 NMI RIF1 RBM43
GH02G151315 0.9 Ensembl ENCODE 49.1 -41.8 -41849 1.2 FOXA2 TEAD1 DPF2 CEBPG TEAD3 FOXA1 GATA3 SMARCA4 IKZF1 CEBPA TNFAIP6 NMI
GH02G151260 1.1 ENCODE 39.7 -96.3 -96280 2.5 CREB3L1 ARNT WRNIP1 SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 ZNF207 TNFAIP6 RBM43 NMI ENSG00000236885
GH02G151339 0.7 Ensembl ENCODE 48.4 -18.0 -18044 0.8 ZSCAN4 IKZF1 TNFAIP6 NMI
GH02G151297 1 Ensembl ENCODE 32.4 -59.5 -59536 1.3 JUN PYGO2 FOSL1 POLR2A GATA2 FOS ETV6 RELB IKZF2 ZNF639 TNFAIP6 NMI RBM43
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TNFAIP6 on UCSC Golden Path with GeneCards custom track

Genomic Location for TNFAIP6 Gene

Chromosome:
2
Start:
151,357,583 bp from pter
End:
151,381,245 bp from pter
Size:
23,663 bases
Orientation:
Plus strand

Genomic View for TNFAIP6 Gene

Genes around TNFAIP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNFAIP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNFAIP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNFAIP6 Gene

Proteins for TNFAIP6 Gene

  • Protein details for TNFAIP6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P98066-TSG6_HUMAN
    Recommended name:
    Tumor necrosis factor-inducible gene 6 protein
    Protein Accession:
    P98066
    Secondary Accessions:
    • Q53TI7
    • Q8WWI9

    Protein attributes for TNFAIP6 Gene

    Size:
    277 amino acids
    Molecular mass:
    31203 Da
    Quaternary structure:
    • Interacts with inter-alpha-inhibitor (I-alpha-I). Chondroitin sulfate may be required for the stability of the complex.

    Three dimensional structures from OCA and Proteopedia for TNFAIP6 Gene

neXtProt entry for TNFAIP6 Gene

Post-translational modifications for TNFAIP6 Gene

  • Glycosylation at isoforms=118 and Asn258
  • Modification sites at PhosphoSitePlus

Other Protein References for TNFAIP6 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Abcam antibodies for TNFAIP6

No data available for DME Specific Peptides for TNFAIP6 Gene

Domains & Families for TNFAIP6 Gene

Protein Domains for TNFAIP6 Gene

Suggested Antigen Peptide Sequences for TNFAIP6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TNFAIP6: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TNFAIP6 Gene

Function for TNFAIP6 Gene

Molecular function for TNFAIP6 Gene

GENATLAS Biochemistry:
tumor necrosis factor,alpha-induced protein 6
UniProtKB/Swiss-Prot Function:
Possibly involved in cell-cell and cell-matrix interactions during inflammation and tumorigenesis.
UniProtKB/Swiss-Prot Induction:
By TNF.

Gene Ontology (GO) - Molecular Function for TNFAIP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 18042364
GO:0005540 hyaluronic acid binding TAS,IEA --
genes like me logo Genes that share ontologies with TNFAIP6: view
genes like me logo Genes that share phenotypes with TNFAIP6: view

Animal Models for TNFAIP6 Gene

MGI Knock Outs for TNFAIP6:

Animal Model Products

  • Taconic Biosciences Mouse Models for TNFAIP6

CRISPR Products

miRNA for TNFAIP6 Gene

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TNFAIP6 Gene

Localization for TNFAIP6 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TNFAIP6 gene
Compartment Confidence
extracellular 5
plasma membrane 3
nucleus 2
cytosol 2

Gene Ontology (GO) - Cellular Components for TNFAIP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IEA --
GO:1904724 tertiary granule lumen TAS --
GO:1904813 ficolin-1-rich granule lumen TAS --
genes like me logo Genes that share ontologies with TNFAIP6: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TNFAIP6 Gene

Pathways & Interactions for TNFAIP6 Gene

genes like me logo Genes that share pathways with TNFAIP6: view

Pathways by source for TNFAIP6 Gene

Gene Ontology (GO) - Biological Process for TNFAIP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006954 inflammatory response TAS 1730767
GO:0007155 cell adhesion IEA --
GO:0007165 signal transduction TAS 1730767
GO:0007267 cell-cell signaling TAS 1730767
GO:0030335 positive regulation of cell migration IEA --
genes like me logo Genes that share ontologies with TNFAIP6: view

No data available for SIGNOR curated interactions for TNFAIP6 Gene

Drugs & Compounds for TNFAIP6 Gene

(7) Drugs for TNFAIP6 Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Hyaluronic acid Approved, Vet_approved Pharma Target, binder 469

(2) Additional Compounds for TNFAIP6 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with TNFAIP6: view

Transcripts for TNFAIP6 Gene

mRNA/cDNA for TNFAIP6 Gene

Unigene Clusters for TNFAIP6 Gene

Tumor necrosis factor, alpha-induced protein 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNFAIP6 Gene

No ASD Table

Relevant External Links for TNFAIP6 Gene

GeneLoc Exon Structure for
TNFAIP6
ECgene alternative splicing isoforms for
TNFAIP6

Expression for TNFAIP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNFAIP6 Gene

mRNA differential expression in normal tissues according to GTEx for TNFAIP6 Gene

This gene is overexpressed in Whole Blood (x17.7).

Protein differential expression in normal tissues from HIPED for TNFAIP6 Gene

This gene is overexpressed in Islet of Langerhans (47.8) and Vitreous humor (21.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TNFAIP6 Gene



Protein tissue co-expression partners for TNFAIP6 Gene

NURSA nuclear receptor signaling pathways regulating expression of TNFAIP6 Gene:

TNFAIP6

SOURCE GeneReport for Unigene cluster for TNFAIP6 Gene:

Hs.437322

mRNA Expression by UniProt/SwissProt for TNFAIP6 Gene:

P98066-TSG6_HUMAN
Tissue specificity: Found in the synovial fluid of patients with rheumatoid arthritis.

Evidence on tissue expression from TISSUES for TNFAIP6 Gene

  • Lung(4.4)
  • Spleen(4.2)
  • Blood(2.5)
  • Kidney(2)
genes like me logo Genes that share expression patterns with TNFAIP6: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for TNFAIP6 Gene

Orthologs for TNFAIP6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TNFAIP6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TNFAIP6 35 34
  • 99.64 (n)
OneToOne
cow
(Bos Taurus)
Mammalia TSG-6 35
  • 94 (a)
OneToOne
TNFAIP6 34
  • 93.74 (n)
dog
(Canis familiaris)
Mammalia TNFAIP6 34 35
  • 89.77 (n)
mouse
(Mus musculus)
Mammalia Tnfaip6 35 16 34
  • 88.26 (n)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TNFAIP6 35
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TNFAIP6 35
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tnfaip6 34
  • 86.62 (n)
chicken
(Gallus gallus)
Aves TNFIP6 35
  • 79 (a)
OneToOne
TNFAIP6 34
  • 77.52 (n)
lizard
(Anolis carolinensis)
Reptilia TNFAIP6 35
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tnfaip6 34
  • 69.46 (n)
zebrafish
(Danio rerio)
Actinopterygii tnfaip6 34 35
  • 70.06 (n)
Dr.17738 34
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
OneToMany
Species where no ortholog for TNFAIP6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TNFAIP6 Gene

ENSEMBL:
Gene Tree for TNFAIP6 (if available)
TreeFam:
Gene Tree for TNFAIP6 (if available)

Paralogs for TNFAIP6 Gene

Paralogs for TNFAIP6 Gene

genes like me logo Genes that share paralogs with TNFAIP6: view

Variants for TNFAIP6 Gene

Sequence variations from dbSNP and Humsavar for TNFAIP6 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000029443 -- 151,361,776(+) TTTGC(C/T)GTATG intron-variant
rs1000243544 -- 151,377,988(+) AAAAA(A/G)TATCC intron-variant
rs1000443006 -- 151,361,522(+) TCTTA(A/G)GAAAT intron-variant
rs1000883264 -- 151,357,968(+) ATAAA(A/G)TGAAT intron-variant
rs1000892017 -- 151,369,801(+) ATTCA(A/C/T)AAAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TNFAIP6 Gene

Variant ID Type Subtype PubMed ID
dgv4094n100 CNV gain 25217958
esv34659 CNV loss 17911159
nsv1012891 CNV gain 25217958
nsv2972 CNV insertion 18451855
nsv834418 CNV gain 17160897

Variation tolerance for TNFAIP6 Gene

Residual Variation Intolerance Score: 75.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.01; 80.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TNFAIP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNFAIP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TNFAIP6 Gene

Disorders for TNFAIP6 Gene

MalaCards: The human disease database

(5) MalaCards diseases for TNFAIP6 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
arthritis
  • inflammatory disorder of joint
rheumatoid arthritis
  • rheumatoid arthritis, progression of
osteoarthritis
  • arthropathy
chronic active epstein-barr virus infection
  • caebv infection
ulceroglandular tularemia
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for TNFAIP6

Genetic Association Database (GAD)
TNFAIP6
Human Genome Epidemiology (HuGE) Navigator
TNFAIP6
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TNFAIP6
genes like me logo Genes that share disorders with TNFAIP6: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TNFAIP6 Gene

Publications for TNFAIP6 Gene

  1. A novel allelic variant of the human TSG-6 gene encoding an amino acid difference in the CUB module. Chromosomal localization, frequency analysis, modeling, and expression. (PMID: 11854277) Nentwich H.A. … Day A.J. (J. Biol. Chem. 2002) 3 4 22 46 64
  2. A novel secretory tumor necrosis factor-inducible protein (TSG-6) is a member of the family of hyaluronate binding proteins, closely related to the adhesion receptor CD44. (PMID: 1730767) Lee T.H. … Vilcek J. (J. Cell Biol. 1992) 2 3 4 22 64
  3. TSG-6 modulates the interaction between hyaluronan and cell surface CD44. (PMID: 15060082) Lesley J. … Mikecz K. (J. Biol. Chem. 2004) 2 3 22 64
  4. TNF/IL-1-inducible protein TSG-6 potentiates plasmin inhibition by inter-alpha-inhibitor and exerts a strong anti-inflammatory effect in vivo. (PMID: 8568267) Wisniewski H.G. … Cronstein B.N. (J. Immunol. 1996) 2 3 22 64
  5. TSG-6, an arthritis-associated hyaluronan binding protein, forms a stable complex with the serum protein inter-alpha-inhibitor. (PMID: 7516184) Wisniewski H.-G. … Vilcek J. (Biochemistry 1994) 3 4 22 64

Products for TNFAIP6 Gene

Sources for TNFAIP6 Gene

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