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Aliases for TNFAIP6 Gene

Aliases for TNFAIP6 Gene

  • Tumor Necrosis Factor, Alpha-Induced Protein 6 2 3
  • TNF-Stimulated Gene 6 Protein 3 4
  • Hyaluronate-Binding Protein 3 4
  • TNF Alpha-Induced Protein 6 3 4
  • TSG-6 3 4
  • TSG6 3 4
  • Tumor Necrosis Factor Alpha-Inducible Protein 6 3
  • Tumor Necrosis Factor-Stimulated Gene-6 Protein 3
  • Tumor Necrosis Factor-Inducible Gene 6 Protein 3
  • Tumor Necrosis Factor Alpha-Induced Protein 6 4

External Ids for TNFAIP6 Gene

Summaries for TNFAIP6 Gene

Entrez Gene Summary for TNFAIP6 Gene

  • The protein encoded by this gene is a secretory protein that contains a hyaluronan-binding domain, and thus is a member of the hyaluronan-binding protein family. The hyaluronan-binding domain is known to be involved in extracellular matrix stability and cell migration. This protein has been shown to form a stable complex with inter-alpha-inhibitor (I alpha I), and thus enhance the serine protease inhibitory activity of I alpha I, which is important in the protease network associated with inflammation. This gene can be induced by proinflammatory cytokines such as tumor necrosis factor alpha and interleukin-1. Enhanced levels of this protein are found in the synovial fluid of patients with osteoarthritis and rheumatoid arthritis.[provided by RefSeq, Dec 2010]

GeneCards Summary for TNFAIP6 Gene

TNFAIP6 (Tumor Necrosis Factor, Alpha-Induced Protein 6) is a Protein Coding gene. Diseases associated with TNFAIP6 include osteoarthritis and chronic active epstein-barr virus infection. Among its related pathways are Akt Signaling and Akt Signaling. GO annotations related to this gene include hyaluronic acid binding. An important paralog of this gene is STAB2.

UniProtKB/Swiss-Prot for TNFAIP6 Gene

  • Possibly involved in cell-cell and cell-matrix interactions during inflammation and tumorigenesis

Gene Wiki entry for TNFAIP6 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNFAIP6 Gene

Genomics for TNFAIP6 Gene

Genomic Location for TNFAIP6 Gene

Start:
151,357,592 bp from pter
End:
151,380,048 bp from pter
Size:
22,457 bases
Orientation:
Plus strand

Genomic View for TNFAIP6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TNFAIP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNFAIP6 Gene

Regulatory Elements for TNFAIP6 Gene

Proteins for TNFAIP6 Gene

  • Protein details for TNFAIP6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P98066-TSG6_HUMAN
    Recommended name:
    Tumor necrosis factor-inducible gene 6 protein
    Protein Accession:
    P98066
    Secondary Accessions:
    • Q53TI7
    • Q8WWI9

    Protein attributes for TNFAIP6 Gene

    Size:
    277 amino acids
    Molecular mass:
    31203 Da
    Quaternary structure:
    • Interacts with inter-alpha-inhibitor (I-alpha-I). Chondroitin sulfate may be required for the stability of the complex.

    Three dimensional structures from OCA and Proteopedia for TNFAIP6 Gene

neXtProt entry for TNFAIP6 Gene

Proteomics data for TNFAIP6 Gene at MOPED

Post-translational modifications for TNFAIP6 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn118 and Asn258

Other Protein References for TNFAIP6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TNFAIP6 Gene

Domains for TNFAIP6 Gene

Protein Domains for TNFAIP6 Gene

Suggested Antigen Peptide Sequences for TNFAIP6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P98066

UniProtKB/Swiss-Prot:

TSG6_HUMAN
Domain:
  • Contains 1 CUB domain.:
    • P98066
  • Contains 1 Link domain.:
    • P98066
genes like me logo Genes that share domains with TNFAIP6: view

No data available for Gene Families for TNFAIP6 Gene

Function for TNFAIP6 Gene

Molecular function for TNFAIP6 Gene

GENATLAS Biochemistry: tumor necrosis factor,alpha-induced protein 6
UniProtKB/Swiss-Prot Function: Possibly involved in cell-cell and cell-matrix interactions during inflammation and tumorigenesis
UniProtKB/Swiss-Prot Induction: By TNF

Gene Ontology (GO) - Molecular Function for TNFAIP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005540 hyaluronic acid binding IEA --
genes like me logo Genes that share ontologies with TNFAIP6: view
genes like me logo Genes that share phenotypes with TNFAIP6: view

Animal Models for TNFAIP6 Gene

MGI Knock Outs for TNFAIP6:

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for TNFAIP6 Gene

Localization for TNFAIP6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TNFAIP6 Gene COMPARTMENTS Subcellular localization image for TNFAIP6 gene
Compartment Confidence
extracellular 3
plasma membrane 3
cytoskeleton 1
cytosol 1

Gene Ontology (GO) - Cellular Components for TNFAIP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IEA --
genes like me logo Genes that share ontologies with TNFAIP6: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TNFAIP6 Gene

Pathways for TNFAIP6 Gene

genes like me logo Genes that share pathways with TNFAIP6: view

Pathways by source for TNFAIP6 Gene

Interacting Proteins for TNFAIP6 Gene

Gene Ontology (GO) - Biological Process for TNFAIP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006954 inflammatory response TAS 1730767
GO:0007155 cell adhesion IEA --
GO:0007165 signal transduction TAS 1730767
GO:0007267 cell-cell signaling TAS 1730767
GO:0030335 positive regulation of cell migration IEA --
genes like me logo Genes that share ontologies with TNFAIP6: view

Compounds for TNFAIP6 Gene

(3) ApexBio Compounds for TNFAIP6 Gene

Compound Action Cas Number
Lenalidomide (CC-5013) TNF-alfa secretion inhibitor with IC50 of 13 nM. [191732-72-6]
Necrostatin-1 Necrostatin-1 is a specific RIP1 inhibitor and inhibits TNF-alfa-induced necroptosis with EC50 of 490 nM. [4311-88-0]
Pomalidomide (CC-4047) Pomalidomide, previously known as CC-4047 or actimid, is a potent immunomodulatory molecule that exhibits antineoplastic activity for the treatment of hematological malignancies, especially relapsed and refractory multiple myeloma (MM). [19171-19-8]

(1) HMDB Compounds for TNFAIP6 Gene

Compound Synonyms Cas Number PubMed IDs
Hyaluronic acid
  • hyaluronic acid
9004-61-9

(9) Novoseek inferred chemical compound relationships for TNFAIP6 Gene

Compound -log(P) Hits PubMed IDs
glycosaminoglycan 60.8 2
chondroitin sulfate 59.4 7
hyaluronic acid 44.2 3
heparin 33 4
serine 19.9 6
genes like me logo Genes that share compounds with TNFAIP6: view

Transcripts for TNFAIP6 Gene

mRNA/cDNA for TNFAIP6 Gene

Unigene Clusters for TNFAIP6 Gene

Tumor necrosis factor, alpha-induced protein 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNFAIP6 Gene

No ASD Table

Relevant External Links for TNFAIP6 Gene

GeneLoc Exon Structure for
TNFAIP6
ECgene alternative splicing isoforms for
TNFAIP6

Expression for TNFAIP6 Gene

mRNA expression in normal human tissues for TNFAIP6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TNFAIP6 Gene

This gene is overexpressed in Whole Blood (17.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TNFAIP6 Gene

SOURCE GeneReport for Unigene cluster for TNFAIP6 Gene Hs.437322

mRNA Expression by UniProt/SwissProt for TNFAIP6 Gene

P98066-TSG6_HUMAN
Tissue specificity: Found in the synovial fluid of patients with rheumatoid arthritis.
genes like me logo Genes that share expressions with TNFAIP6: view

Orthologs for TNFAIP6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TNFAIP6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TNFAIP6 35
  • 99.64 (n)
  • 99.28 (a)
TNFAIP6 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TNFAIP6 35
  • 93.74 (n)
  • 94.95 (a)
TSG-6 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TNFAIP6 35
  • 89.77 (n)
  • 92.06 (a)
TNFAIP6 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tnfaip6 35
  • 88.26 (n)
  • 92.8 (a)
Tnfaip6 16
Tnfaip6 36
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TNFAIP6 36
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TNFAIP6 36
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tnfaip6 35
  • 86.62 (n)
  • 91.67 (a)
chicken
(Gallus gallus)
Aves TNFAIP6 35
  • 77.52 (n)
  • 82.38 (a)
TNFIP6 36
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TNFAIP6 36
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tnfaip6 35
  • 69.46 (n)
  • 74.9 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.17738 35
tnfaip6 35
  • 70.06 (n)
  • 74.15 (a)
tnfaip6 36
  • 66 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
OneToMany
Species with no ortholog for TNFAIP6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TNFAIP6 Gene

ENSEMBL:
Gene Tree for TNFAIP6 (if available)
TreeFam:
Gene Tree for TNFAIP6 (if available)

Paralogs for TNFAIP6 Gene

Paralogs for TNFAIP6 Gene

genes like me logo Genes that share paralogs with TNFAIP6: view

Variants for TNFAIP6 Gene

Sequence variations from dbSNP and Humsavar for TNFAIP6 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
VAR_013005 -

Structural Variations from Database of Genomic Variants (DGV) for TNFAIP6 Gene

Variant ID Type Subtype PubMed ID
esv34659 CNV Loss 17911159
nsv2972 CNV Insertion 18451855
nsv834418 CNV Gain 17160897

Relevant External Links for TNFAIP6 Gene

HapMap Linkage Disequilibrium report
TNFAIP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TNFAIP6 Gene

Disorders for TNFAIP6 Gene

(7) Novoseek inferred disease relationships for TNFAIP6 Gene

Disease -log(P) Hits PubMed IDs
necrosis 64 57
arthritis 51.4 23
inflammation 44.3 24
tumors 42.5 51
rheumatoid arthritis 36.4 7

Relevant External Links for TNFAIP6

Genetic Association Database (GAD)
TNFAIP6
Human Genome Epidemiology (HuGE) Navigator
TNFAIP6
genes like me logo Genes that share disorders with TNFAIP6: view

No data available for UniProtKB/Swiss-Prot for TNFAIP6 Gene

Publications for TNFAIP6 Gene

  1. A novel secretory tumor necrosis factor-inducible protein (TSG-6) is a member of the family of hyaluronate binding proteins, closely related to the adhesion receptor CD44. (PMID: 1730767) Lee T.H. … Vilcek J. (J. Cell Biol. 1992) 2 3 4 23
  2. A novel allelic variant of the human TSG-6 gene encoding an amino acid difference in the CUB module. Chromosomal localization, frequency analysis, modeling, and expression. (PMID: 11854277) Nentwich H.A. … Day A.J. (J. Biol. Chem. 2002) 3 4 23 48
  3. TNF/IL-1-inducible protein TSG-6 potentiates plasmin inhibition by inter-alpha-inhibitor and exerts a strong anti-inflammatory effect in vivo. (PMID: 8568267) Wisniewski H.G. … Cronstein B.N. (J. Immunol. 1996) 2 3 23
  4. TSG-6, an arthritis-associated hyaluronan binding protein, forms a stable complex with the serum protein inter-alpha-inhibitor. (PMID: 7516184) Wisniewski H.-G. … Vilcek J. (Biochemistry 1994) 3 4 23
  5. TSG-6 modulates the interaction between hyaluronan and cell surface CD44. (PMID: 15060082) Lesley J. … Mikecz K. (J. Biol. Chem. 2004) 2 3 23

Products for TNFAIP6 Gene

Sources for TNFAIP6 Gene

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