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Aliases for SNRPC Gene

Aliases for SNRPC Gene

  • Small Nuclear Ribonucleoprotein Polypeptide C 2 3 5
  • U1 SnRNP C 3 4
  • U1-C 3 4
  • U1C 3 4
  • U1 Small Nuclear RNP Specific C 3
  • U1 SnRNP Protein C 3
  • Yhc1 3

External Ids for SNRPC Gene

Previous GeneCards Identifiers for SNRPC Gene

  • GC06P034727
  • GC06P034772
  • GC06P034833
  • GC06P034725
  • GC06P034447
  • GC06P034826
  • GC06P035771
  • GC06P036301
  • GC06P037287
  • GC06P034928
  • GC06P035510

Summaries for SNRPC Gene

Entrez Gene Summary for SNRPC Gene

  • This gene encodes one of the specific protein components of the U1 small nuclear ribonucleoprotein (snRNP) particle required for the formation of the spliceosome. The encoded protein participates in the processing of nuclear precursor messenger RNA splicing. snRNP particles are attacked by autoantibodies frequently produced by patients with connective tissue diseases. The genome contains several pseudogenes of this functional gene. Alternative splicing results in a non-coding transcript variant.[provided by RefSeq, Oct 2009]

GeneCards Summary for SNRPC Gene

SNRPC (Small Nuclear Ribonucleoprotein Polypeptide C) is a Protein Coding gene. Diseases associated with SNRPC include Chondrosarcoma, Extraskeletal Myxoid. Among its related pathways are mRNA Splicing - Major Pathway. GO annotations related to this gene include nucleic acid binding and protein homodimerization activity.

UniProtKB/Swiss-Prot for SNRPC Gene

  • Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5 splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5 splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5 splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5 end of the U1 snRNA and the 5 splice-site region.

Gene Wiki entry for SNRPC Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNRPC Gene

Genomics for SNRPC Gene

Regulatory Elements for SNRPC Gene

Enhancers for SNRPC Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SNRPC on UCSC Golden Path with GeneCards custom track

Promoters for SNRPC Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNRPC on UCSC Golden Path with GeneCards custom track

Genomic Location for SNRPC Gene

Chromosome:
6
Start:
34,757,094 bp from pter
End:
34,773,857 bp from pter
Size:
16,764 bases
Orientation:
Plus strand

Genomic View for SNRPC Gene

Genes around SNRPC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRPC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRPC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRPC Gene

Proteins for SNRPC Gene

  • Protein details for SNRPC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P09234-RU1C_HUMAN
    Recommended name:
    U1 small nuclear ribonucleoprotein C
    Protein Accession:
    P09234
    Secondary Accessions:
    • Q5TAL3

    Protein attributes for SNRPC Gene

    Size:
    159 amino acids
    Molecular mass:
    17394 Da
    Quaternary structure:
    • U1 snRNP is composed of the 7 core Sm proteins SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF and SNRPG that assemble in an heptameric protein ring on the Sm site of the small nuclear RNA to form the core snRNP, and at least three U1 snRNP-specific proteins SNRNP70/U1-70K, SNRPA/U1-A and SNRPC/U1-C. SNRPC/U1-C interacts with U1 snRNA and the 5 splice-site region of the pre-mRNA.
    SequenceCaution:
    • Sequence=CAI20351.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for SNRPC Gene

neXtProt entry for SNRPC Gene

Proteomics data for SNRPC Gene at MOPED

Post-translational modifications for SNRPC Gene

  • Ubiquitination at Lys 3 and Lys 40
  • Modification sites at PhosphoSitePlus

Other Protein References for SNRPC Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SNRPC Gene

Domains & Families for SNRPC Gene

Protein Domains for SNRPC Gene

Graphical View of Domain Structure for InterPro Entry

P09234

UniProtKB/Swiss-Prot:

RU1C_HUMAN :
  • Belongs to the U1 small nuclear ribonucleoprotein C family.
  • Contains 1 matrin-type zinc finger.
Family:
  • Belongs to the U1 small nuclear ribonucleoprotein C family.
Similarity:
  • Contains 1 matrin-type zinc finger.
genes like me logo Genes that share domains with SNRPC: view

No data available for Gene Families for SNRPC Gene

Function for SNRPC Gene

Molecular function for SNRPC Gene

UniProtKB/Swiss-Prot Function:
Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5 splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5 splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5 splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5 end of the U1 snRNA and the 5 splice-site region.

Gene Ontology (GO) - Molecular Function for SNRPC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003729 mRNA binding IEA --
GO:0008270 zinc ion binding IEA,IDA 15312772
GO:0042803 protein homodimerization activity IPI 8532530
genes like me logo Genes that share ontologies with SNRPC: view
genes like me logo Genes that share phenotypes with SNRPC: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNRPC Gene

Localization for SNRPC Gene

Subcellular locations from UniProtKB/Swiss-Prot for SNRPC Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SNRPC Gene COMPARTMENTS Subcellular localization image for SNRPC gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for SNRPC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0071004 U2-type prespliceosome IEA --
genes like me logo Genes that share ontologies with SNRPC: view

Pathways & Interactions for SNRPC Gene

SuperPathways for SNRPC Gene

Superpath Contained pathways
1 mRNA Splicing - Major Pathway
genes like me logo Genes that share pathways with SNRPC: view

Pathways by source for SNRPC Gene

1 KEGG pathway for SNRPC Gene

Gene Ontology (GO) - Biological Process for SNRPC Gene

None

No data available for SIGNOR curated interactions for SNRPC Gene

Drugs & Compounds for SNRPC Gene

(1) Drugs for SNRPC Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with SNRPC: view

Transcripts for SNRPC Gene

Unigene Clusters for SNRPC Gene

Small nuclear ribonucleoprotein polypeptide C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNRPC Gene

No ASD Table

Relevant External Links for SNRPC Gene

GeneLoc Exon Structure for
SNRPC
ECgene alternative splicing isoforms for
SNRPC

Expression for SNRPC Gene

mRNA expression in normal human tissues for SNRPC Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SNRPC Gene

This gene is overexpressed in Fetal Brain (8.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SNRPC Gene



SOURCE GeneReport for Unigene cluster for SNRPC Gene Hs.1063

genes like me logo Genes that share expression patterns with SNRPC: view

Protein tissue co-expression partners for SNRPC Gene

- Elite partner

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SNRPC Gene

Orthologs for SNRPC Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SNRPC Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia LOC102153257 35
  • 96.23 (n)
  • 98.11 (a)
SNRPC 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SNRPC 35
  • 99.58 (n)
  • 100 (a)
SNRPC 36
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC685273 35
  • 90.15 (n)
  • 98.74 (a)
cow
(Bos Taurus)
Mammalia SNRPC 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 99 (a)
OneToMany
SNRPC 36
  • 87 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snrpc 36
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNRPC 36
  • 95 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNRPC 36
  • 98 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNRPC 36
  • 84 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.1158 35
zebrafish
(Danio rerio)
Actinopterygii snrpc 35
snrpc 36
  • 83 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta snRNP-U1-C 36
  • 59 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F08B4.7 36
  • 53 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YHC1 38
rice
(Oryza sativa)
Liliopsida Os.5630 35
wheat
(Triticum aestivum)
Liliopsida Ta.13756 35
corn
(Zea mays)
Liliopsida Zm.5207 35
Species with no ortholog for SNRPC:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)

Evolution for SNRPC Gene

ENSEMBL:
Gene Tree for SNRPC (if available)
TreeFam:
Gene Tree for SNRPC (if available)

Paralogs for SNRPC Gene

genes like me logo Genes that share paralogs with SNRPC: view

No data available for Paralogs for SNRPC Gene

Variants for SNRPC Gene

Sequence variations from dbSNP and Humsavar for SNRPC Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs6457790 -- 34,771,213(+) TGTCT(C/T)AGCTA intron-variant
rs6904392 -- 34,757,289(+) atACG(C/T)TCTTC nc-transcript-variant, utr-variant-5-prime
rs6914231 -- 34,771,349(+) AAAAA(A/G)GTGTG intron-variant
rs9968782 -- 34,769,177(+) AGCGG(A/G)ATAGT intron-variant
rs9968899 -- 34,767,972(+) GGGGC(A/G)ATGAT nc-transcript-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SNRPC Gene

Variant ID Type Subtype PubMed ID
dgv6831n71 CNV Gain 21882294
nsv885795 CNV Loss 21882294
nsv462905 CNV Gain 19166990
nsv885796 CNV Gain 21882294

Variation tolerance for SNRPC Gene

Residual Variation Intolerance Score: 44.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.92; 87.17% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SNRPC Gene

Disorders for SNRPC Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNRPC Gene - From: DISEASES

Disorder Aliases PubMed IDs
chondrosarcoma, extraskeletal myxoid
  • extraskeletal myxoid chondrosarcoma
- elite association - COSMIC cancer census association via MalaCards
Search SNRPC in MalaCards View complete list of genes associated with diseases

Relevant External Links for SNRPC

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNRPC
genes like me logo Genes that share disorders with SNRPC: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNRPC Gene

Publications for SNRPC Gene

  1. Human U1 snRNP-specific C protein: complete cDNA and protein sequence and identification of a multigene family in mammals. (PMID: 2971157) Sillekens P.T.G. … van Venrooij W.J. (Nucleic Acids Res. 1988) 2 3 4 67
  2. Homodimerization of the human U1 snRNP-specific protein C. (PMID: 8532530) Gunnewiek J.M. … Nelissen R.L. (Nucleic Acids Res. 1995) 2 3 23
  3. Protein stoichiometry of a multiprotein complex, the human spliceosomal U1 small nuclear ribonucleoprotein: absolute quantification using isotope-coded tags and mass spectrometry. (PMID: 15525645) Hochleitner E.O. … Lottspeich F. (J. Biol. Chem. 2005) 3 23
  4. The structure and biochemical properties of the human spliceosomal protein U1C. (PMID: 15312772) Muto Y. … Nagai K. (J. Mol. Biol. 2004) 3 23
  5. The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites. (PMID: 12486009) FAPrch P. … ValcA!rcel J. (EMBO J. 2002) 3 23

Products for SNRPC Gene

Sources for SNRPC Gene

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