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Aliases for C11orf1 Gene

Aliases for C11orf1 Gene

  • Chromosome 11 Open Reading Frame 1 2 3
  • C11orf17 6
  • AKIP1 6
  • BCA3 6

External Ids for C11orf1 Gene

Summaries for C11orf1 Gene

GeneCards Summary for C11orf1 Gene

C11orf1 (Chromosome 11 Open Reading Frame 1) is a Protein Coding gene.

Gene Wiki entry for C11orf1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf1 Gene

Genomics for C11orf1 Gene

Genomic Location for C11orf1 Gene

Start:
111,878,935 bp from pter
End:
111,885,975 bp from pter
Size:
7,041 bases
Orientation:
Plus strand

Genomic View for C11orf1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C11orf1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf1 Gene

Regulatory Elements for C11orf1 Gene

Proteins for C11orf1 Gene

  • Protein details for C11orf1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H5F2-CK001_HUMAN
    Recommended name:
    UPF0686 protein C11orf1
    Protein Accession:
    Q9H5F2
    Secondary Accessions:
    • Q6I9X7
    • Q9NQC6

    Protein attributes for C11orf1 Gene

    Size:
    150 amino acids
    Molecular mass:
    17785 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf1 Gene

Proteomics data for C11orf1 Gene at MOPED

Post-translational modifications for C11orf1 Gene

No Post-translational modifications

Other Protein References for C11orf1 Gene

No data available for DME Specific Peptides for C11orf1 Gene

Domains for C11orf1 Gene

Protein Domains for C11orf1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C11orf1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H5F2

UniProtKB/Swiss-Prot:

CK001_HUMAN
Family:
  • Belongs to the UPF0686 family.:
    • Q9H5F2
genes like me logo Genes that share domains with C11orf1: view

No data available for Gene Families for C11orf1 Gene

Function for C11orf1 Gene

Gene Ontology (GO) - Molecular Function for C11orf1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with C11orf1: view

Phenotypes for C11orf1 Gene

genes like me logo Genes that share phenotypes with C11orf1: view

miRNA for C11orf1 Gene

miRTarBase miRNAs that target C11orf1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C11orf1 Gene

Localization for C11orf1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C11orf1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf1 Gene COMPARTMENTS Subcellular localization image for C11orf1 gene
Compartment Confidence
nucleus 5
mitochondrion 2
cytosol 1
extracellular 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for C11orf1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with C11orf1: view

Pathways for C11orf1 Gene

SuperPathways for C11orf1 Gene

No Data Available

Interacting Proteins for C11orf1 Gene

Selected Interacting proteins: Q9H5F2-CK001_HUMAN for C11orf1 Gene via MINT I2D

Symbol External ID(s) Details
SETDB1

Gene Ontology (GO) - Biological Process for C11orf1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with C11orf1: view

No data available for Pathways by source for C11orf1 Gene

Transcripts for C11orf1 Gene

Unigene Clusters for C11orf1 Gene

Chromosome 11 open reading frame 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf1 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d
SP1: -
SP2: - - - -
SP3: - -
SP4:

Relevant External Links for C11orf1 Gene

GeneLoc Exon Structure for
C11orf1
ECgene alternative splicing isoforms for
C11orf1

Expression for C11orf1 Gene

mRNA expression in normal human tissues for C11orf1 Gene

SOURCE GeneReport for Unigene cluster for C11orf1 Gene Hs.17546

genes like me logo Genes that share expressions with C11orf1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for C11orf1 Gene

Orthologs for C11orf1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C11orf1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11orf1 36
  • 69 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 75 (a)
OneToMany
-- 36
  • 78 (a)
OneToMany
LOC101906594 35
  • 92.89 (n)
  • 88.97 (a)
dog
(Canis familiaris)
Mammalia C11orf1 36
  • 89 (a)
OneToOne
C5H11orf1 35
  • 90.16 (n)
  • 88.59 (a)
mouse
(Mus musculus)
Mammalia 1110032A03Rik 35
  • 83.67 (n)
  • 79.19 (a)
1110032A03Rik 16
1110032A03Rik 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C11orf1 36
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1564937 35
  • 86.96 (n)
  • 84.06 (a)
chicken
(Gallus gallus)
Aves C11orf1 36
  • 53 (a)
OneToOne
C24H11ORF1 35
  • 65.55 (n)
  • 64.71 (a)
lizard
(Anolis carolinensis)
Reptilia C11orf1 36
  • 58 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C11orf1 36
  • 42 (a)
OneToOne
LOC797203 35
  • 57.07 (n)
  • 52.27 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 38 (a)
OneToOne
Species with no ortholog for C11orf1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C11orf1 Gene

ENSEMBL:
Gene Tree for C11orf1 (if available)
TreeFam:
Gene Tree for C11orf1 (if available)

Paralogs for C11orf1 Gene

No data available for Paralogs for C11orf1 Gene

Variants for C11orf1 Gene

Sequence variations from dbSNP and Humsavar for C11orf1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs594098 -- 111,883,332(-) ggtta(C/T)aggtg intron-variant
rs1045282 -- 111,883,850(+) AAGTC(A/C)ACTTA reference, synonymous-codon
rs3168260 -- 111,884,067(+) AAAAC(A/C)CAGTA utr-variant-3-prime
rs7125417 -- 111,884,344(+) TGGCT(A/C)ACGCC downstream-variant-500B
rs10644891 -- 111,884,474(+) AAAAA(-/AA)GAATT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C11orf1 Gene

Variant ID Type Subtype PubMed ID
nsv832269 CNV Loss 17160897

Relevant External Links for C11orf1 Gene

HapMap Linkage Disequilibrium report
C11orf1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf1 Gene

Disorders for C11orf1 Gene

No disorders were found for C11orf1 Gene.

No data available for UniProtKB/Swiss-Prot for C11orf1 Gene

Publications for C11orf1 Gene

  1. Characterization of five novel human genes in the 11q13-q22 region. (PMID: 10873569) O'Brien K.P. … Dumanski J.P. (Biochem. Biophys. Res. Commun. 2000) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for C11orf1 Gene

Sources for C11orf1 Gene

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