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Aliases for CXCR5 Gene

Aliases for CXCR5 Gene

  • Chemokine (C-X-C Motif) Receptor 5 2 3
  • Burkitt Lymphoma Receptor 1, GTP Binding Protein (Chemokine (C-X-C Motif) Receptor 5) 2 3
  • Burkitt Lymphoma Receptor 1, GTP-Binding Protein 2 3
  • Monocyte-Derived Receptor 15 3 4
  • CXC-R5 3 4
  • CXCR-5 3 4
  • MDR-15 3 4
  • MDR15 3 4
  • BLR1 3 4
  • Burkitt Lymphoma Receptor 1 4
  • CD185 Antigen 4
  • CD185 3

External Ids for CXCR5 Gene

Previous HGNC Symbols for CXCR5 Gene

  • BLR1

Previous GeneCards Identifiers for CXCR5 Gene

  • GC11P118260
  • GC11P118754
  • GC11P114694

Summaries for CXCR5 Gene

Entrez Gene Summary for CXCR5 Gene

  • This gene encodes a multi-pass membrane protein that belongs to the CXC chemokine receptor family. It is expressed in mature B-cells and Burkitt's lymphoma. This cytokine receptor binds to B-lymphocyte chemoattractant (BLC), and is involved in B-cell migration into B-cell follicles of spleen and Peyer patches. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Aug 2011]

GeneCards Summary for CXCR5 Gene

CXCR5 (Chemokine (C-X-C Motif) Receptor 5) is a Protein Coding gene. Diseases associated with CXCR5 include burkitt lymphoma and intraocular lymphoma. Among its related pathways are Signaling by GPCR and Akt Signaling. GO annotations related to this gene include G-protein coupled receptor activity and C-X-C chemokine receptor activity. An important paralog of this gene is CCR7.

UniProtKB/Swiss-Prot for CXCR5 Gene

  • Cytokine receptor that binds to B-lymphocyte chemoattractant (BLC). Involved in B-cell migration into B-cell follicles of spleen and Peyer patches but not into those of mesenteric or peripheral lymph nodes. May have a regulatory function in Burkitt lymphoma (BL) lymphomagenesis and/or B-cell differentiation

Gene Wiki entry for CXCR5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CXCR5 Gene

Genomics for CXCR5 Gene

Regulatory Elements for CXCR5 Gene

Genomic Location for CXCR5 Gene

Chromosome:
11
Start:
118,883,766 bp from pter
End:
118,897,799 bp from pter
Size:
14,034 bases
Orientation:
Plus strand

Genomic View for CXCR5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for CXCR5 Gene

Proteins for CXCR5 Gene

  • Protein details for CXCR5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P32302-CXCR5_HUMAN
    Recommended name:
    C-X-C chemokine receptor type 5
    Protein Accession:
    P32302
    Secondary Accessions:
    • Q14811

    Protein attributes for CXCR5 Gene

    Size:
    372 amino acids
    Molecular mass:
    41955 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CXCR5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CXCR5 Gene

Proteomics data for CXCR5 Gene at MOPED

Post-translational modifications for CXCR5 Gene

  • Glycosylation at Asn 28 and Asn 196
  • Modification sites at PhosphoSitePlus

Other Protein References for CXCR5 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for CXCR5 Gene

Domains & Families for CXCR5 Gene

Gene Families for CXCR5 Gene

Protein Domains for CXCR5 Gene

Suggested Antigen Peptide Sequences for CXCR5 Gene

Graphical View of Domain Structure for InterPro Entry

P32302

UniProtKB/Swiss-Prot:

CXCR5_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with CXCR5: view

Function for CXCR5 Gene

Molecular function for CXCR5 Gene

UniProtKB/Swiss-Prot Function:
Cytokine receptor that binds to B-lymphocyte chemoattractant (BLC). Involved in B-cell migration into B-cell follicles of spleen and Peyer patches but not into those of mesenteric or peripheral lymph nodes. May have a regulatory function in Burkitt lymphoma (BL) lymphomagenesis and/or B-cell differentiation

Gene Ontology (GO) - Molecular Function for CXCR5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity TAS 1425907
GO:0005515 protein binding IPI 23773523
GO:0016494 C-X-C chemokine receptor activity IEA --
genes like me logo Genes that share ontologies with CXCR5: view
genes like me logo Genes that share phenotypes with CXCR5: view

Animal Models for CXCR5 Gene

MGI Knock Outs for CXCR5:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CXCR5

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for CXCR5 Gene

Localization for CXCR5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CXCR5 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CXCR5 Gene COMPARTMENTS Subcellular localization image for CXCR5 gene
Compartment Confidence
plasma membrane 5
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for CXCR5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane TAS 1425907
GO:0009897 external side of plasma membrane IEA --
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with CXCR5: view

Pathways & Interactions for CXCR5 Gene

genes like me logo Genes that share pathways with CXCR5: view

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for CXCR5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006928 movement of cell or subcellular component TAS 1425907
GO:0006935 chemotaxis IEA --
GO:0006955 immune response IEA --
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0032467 positive regulation of cytokinesis IMP 22888021
genes like me logo Genes that share ontologies with CXCR5: view

No data available for SIGNOR curated interactions for CXCR5 Gene

Drugs & Compounds for CXCR5 Gene

(6) Drugs for CXCR5 Gene - From: NovoSeek, IUPHAR, DGIdb, ApexBio, and ClinicalTrials

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Procaine Approved, Investigational Pharma Channel blocker 28
Calcitriol Approved Nutra TNF-α and IL-1β production inhibitor, Vitamin D receptor (VDR) agonist 158
CXCL13 Pharma Full agonist, Agonist 0
Plerixafor 8HCl (AMD3100 8HCl) Pharma CXCR4 antagonist 0
WZ811 Pharma Competitive CXR4 antagonist,highly potent 0

(4) Additional Compounds for CXCR5 Gene - From: NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
DMSO
PEG-10
RANTES
retinoic acid
302-79-4
genes like me logo Genes that share compounds with CXCR5: view

Transcripts for CXCR5 Gene

mRNA/cDNA for CXCR5 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(46) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CXCR5 Gene

Chemokine (C-X-C motif) receptor 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CXCR5

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CXCR5 Gene

No ASD Table

Relevant External Links for CXCR5 Gene

GeneLoc Exon Structure for
CXCR5
ECgene alternative splicing isoforms for
CXCR5

Expression for CXCR5 Gene

mRNA expression in normal human tissues for CXCR5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CXCR5 Gene

This gene is overexpressed in Whole Blood (x14.9), Spleen (x14.1), and Small Intestine - Terminal Ileum (x9.9).

SOURCE GeneReport for Unigene cluster for CXCR5 Gene Hs.113916

mRNA Expression by UniProt/SwissProt for CXCR5 Gene

P32302-CXCR5_HUMAN
Tissue specificity: Expression in mature B-cells and Burkitt lymphoma cells
genes like me logo Genes that share expression patterns with CXCR5: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for CXCR5 Gene

Orthologs for CXCR5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CXCR5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CXCR5 35
  • 86.56 (n)
  • 84.14 (a)
BLR1 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CXCR5 35
  • 87.72 (n)
  • 86.56 (a)
CXCR5 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cxcr5 35
  • 81.45 (n)
  • 83.6 (a)
Cxcr5 16
Cxcr5 36
  • 83 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CXCR5 35
  • 99.64 (n)
  • 99.46 (a)
CXCR5 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cxcr5 35
  • 81 (n)
  • 81.45 (a)
oppossum
(Monodelphis domestica)
Mammalia CXCR5 36
  • 65 (a)
OneToOne
chicken
(Gallus gallus)
Aves CXCR5 35
  • 58.87 (n)
  • 48.54 (a)
CXCR5 36
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CXCR5 36
  • 44 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cxcr5 35
  • 53.63 (n)
  • 48.58 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100537421 35
  • 52.93 (n)
  • 41.21 (a)
CXCR5 36
  • 39 (a)
OneToOne
Species with no ortholog for CXCR5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CXCR5 Gene

ENSEMBL:
Gene Tree for CXCR5 (if available)
TreeFam:
Gene Tree for CXCR5 (if available)

Paralogs for CXCR5 Gene

genes like me logo Genes that share paralogs with CXCR5: view

Variants for CXCR5 Gene

Sequence variations from dbSNP and Humsavar for CXCR5 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs3922 -- 118,894,891(-) GCCTT(C/T)GAGCT utr-variant-3-prime
rs523604 -- 118,885,029(+) ACCCT(A/G)AGATA intron-variant
rs598207 -- 118,894,558(-) AGCTT(C/G/T)GTCAG synonymous-codon, reference
rs613791 -- 118,893,342(-) TGCTG(A/G)AGGGC intron-variant, upstream-variant-2KB
rs630923 -- 118,883,644(+) TTAAA(A/C)TAGTC upstream-variant-2KB

Variation tolerance for CXCR5 Gene

Residual Variation Intolerance Score: 38.77% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.31; 25.96% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CXCR5 Gene

HapMap Linkage Disequilibrium report
CXCR5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CXCR5 Gene

Disorders for CXCR5 Gene

MalaCards: The human disease database

(11) MalaCards diseases for CXCR5 Gene - From: DISEASES, NovoSeek, and GeneCards

Disorder Aliases PubMed IDs
burkitt lymphoma
  • burkitt's lymphoma
intraocular lymphoma
  • primary intraocular lymphoma
central nervous system lymphoma, primary
  • primary cerebral lymphoma
internuclear ophthalmoplegia
avoidant personality disorder
  • anxious personality disorder
- elite association
Search CXCR5 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CXCR5

Genetic Association Database (GAD)
CXCR5
Human Genome Epidemiology (HuGE) Navigator
CXCR5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CXCR5
genes like me logo Genes that share disorders with CXCR5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CXCR5 Gene

Publications for CXCR5 Gene

  1. Differentiation-specific expression of a novel G protein-coupled receptor from Burkitt's lymphoma. (PMID: 1425907) Dobner T. … Lipp M. (Eur. J. Immunol. 1992) 2 23 67
  2. Serum BLC/CXCL13 concentrations and renal expression of CXCL13/CXCR5 in patients with systemic lupus erythematosus and lupus nephritis. (PMID: 19955043) Lee H.T. … Tsai C.Y. (J. Rheumatol. 2010) 23 67
  3. PI3Kp110-, Src-, FAK-dependent and DOCK2-independent migration and invasion of CXCL13-stimulated prostate cancer cells. (PMID: 20412587) El Haibi C.P. … Lillard J.W. (Mol. Cancer 2010) 23 67
  4. Phagocytosis of apoptotic cells modulates mesenchymal stem cells osteogenic differentiation to enhance IL-17 and RANKL expression on CD4+ T cells. (PMID: 20222014) Tso G.H. … Lau Y.L. (Stem Cells 2010) 23 67
  5. Ectopic and high CXCL13 chemokine expression in myasthenia gravis with thymic lymphoid hyperplasia. (PMID: 20223524) Shiao Y.M. … Chiu H.C. (J. Neuroimmunol. 2010) 23 67

Products for CXCR5 Gene

Sources for CXCR5 Gene

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