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Aliases for PCGEM1 Gene

Subcategory (RNA class) for PCGEM1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for PCGEM1 Gene

  • PCGEM1, Prostate-Specific Transcript (Non-Protein Coding) 2 3
  • Prostate-Specific Transcript 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 71 2 3
  • Prostate Cancer Associated Transcript 9 2 3
  • Prostate-Specific Non-Coding 3
  • Non-Protein Coding RNA 71 2
  • NCRNA00071 3
  • LINC00071 3
  • PCAT9 3

External Ids for PCGEM1 Gene

ORGUL Members for PCGEM1 Gene

Summaries for PCGEM1 Gene

GeneCards Summary for PCGEM1 Gene

PCGEM1 (PCGEM1, Prostate-Specific Transcript (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class. Diseases associated with PCGEM1 include prostate cancer.

Gene Wiki entry for PCGEM1 Gene

fRNAdb sequence ontologies for PCGEM1 Gene - the ORGUL cluster for this gene includes several descriptions:

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary and piRNA Summary for PCGEM1 Gene

Genomics for PCGEM1 Gene

Genomic Location for PCGEM1 Gene

Start:
192,749,845 bp from pter
End:
192,776,899 bp from pter
Size:
27,055 bases
Orientation:
Plus strand

Genomic View for PCGEM1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PCGEM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCGEM1 Gene

Proteins for PCGEM1 Gene

Post-translational modifications for PCGEM1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCGEM1 Gene

Domains for PCGEM1 Gene

Gene Families for PCGEM1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with PCGEM1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for PCGEM1 Gene

Function for PCGEM1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for PCGEM1 Gene

Localization for PCGEM1 Gene

No data available for Gene Ontology (GO) - Cellular Components for PCGEM1 Gene

Pathways for PCGEM1 Gene

SuperPathways for PCGEM1 Gene

No Data Available

Interacting Proteins for PCGEM1 Gene

Gene Ontology (GO) - Biological Process for PCGEM1 Gene

None

No data available for Pathways by source for PCGEM1 Gene

Transcripts for PCGEM1 Gene

mRNA/cDNA for PCGEM1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PCGEM1 Gene

PCGEM1, prostate-specific transcript (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PCGEM1 Gene

No ASD Table

Relevant External Links for PCGEM1 Gene

GeneLoc Exon Structure for
PCGEM1
ECgene alternative splicing isoforms for
PCGEM1

Expression for PCGEM1 Gene

mRNA expression in normal human tissues for PCGEM1 Gene

mRNA differential expression in normal tissues according to GTEx for PCGEM1 Gene

This gene is overexpressed in Prostate (50.3).

SOURCE GeneReport for Unigene cluster for PCGEM1 Gene Hs.546994

genes like me logo Genes that share expressions with PCGEM1: view

Orthologs for PCGEM1 Gene

Evolution for PCGEM1 Gene

ENSEMBL:
Gene Tree for PCGEM1 (if available)
TreeFam:
Gene Tree for PCGEM1 (if available)

No data available for Orthologs for PCGEM1 Gene

Paralogs for PCGEM1 Gene

No data available for Paralogs for PCGEM1 Gene

Variants for PCGEM1 Gene

Sequence variations from dbSNP and Humsavar for PCGEM1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs934947 -- 192,756,082(-) TTAAC(A/G)TATTC intron-variant
rs1347932 -- 192,748,345(-) ATACA(C/T)GGAAA upstream-variant-2KB
rs1439650 -- 192,775,926(-) TTTTT(C/T)TTGAG nc-transcript-variant
rs1439651 -- 192,774,816(-) GTAGG(G/T)TATCA intron-variant
rs1439652 -- 192,774,518(-) ACTCT(A/G)TAAAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PCGEM1 Gene

Variant ID Type Subtype PubMed ID
nsv527665 CNV Loss 19592680
nsv875633 CNV Loss 21882294

Relevant External Links for PCGEM1 Gene

HapMap Linkage Disequilibrium report
PCGEM1

Disorders for PCGEM1 Gene

(1) MalaCards Diseases for PCGEM1 Gene

Search for PCGEM1 Gene in MalaCards »

Relevant External Links for PCGEM1

Genetic Association Database (GAD)
PCGEM1
Human Genome Epidemiology (HuGE) Navigator
PCGEM1
genes like me logo Genes that share disorders with PCGEM1: view

No data available for UniProtKB/Swiss-Prot for PCGEM1 Gene

Publications for PCGEM1 Gene

  1. PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer. (PMID: 11050243) Srikantan V. … Srivastava S. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3 23
  2. Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1. (PMID: 16569192) Fu X. … Srivastava S. (DNA Cell Biol. 2006) 2 3 23
  3. Elevated expression of PCGEM1, a prostate-specific gene with cell growth-promoting function, is associated with high-risk prostate cancer patients. (PMID: 14724589) Petrovics G. … Srivastava S. (Oncogene 2004) 3 23
  4. Risk of breast and prostate cancer is not associated with increased homozygosity in outbred populations. (PMID: 20407466) Enciso-Mora V. … Houlston R.S. (Eur. J. Hum. Genet. 2010) 3 49
  5. Association between lncrna PCGEM1 polymorphisms and prostate cancer risk. (PMID: 23459097) Xue Y. … Wu D. (Prostate Cancer Prostatic Dis. 2013) 2 3

Products for PCGEM1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate PCGEM1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for PCGEM1
    • Block miRNA regulation of PCGEM1 using miScript Target Protectors

    Sources for PCGEM1 Gene

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