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Aliases for RPL21 Gene

Aliases for RPL21 Gene

  • Ribosomal Protein L21 2 3
  • 60S Ribosomal Protein L21 2 3
  • HYPT12 3
  • L21 3

External Ids for RPL21 Gene

Summaries for RPL21 Gene

Entrez Gene Summary for RPL21 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L21E family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL21 Gene

RPL21 (Ribosomal Protein L21) is a Protein Coding gene. Diseases associated with RPL21 include hypotrichosis 12 and hypotrichosis simplex. Among its related pathways are Disease and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include RNA binding and structural constituent of ribosome.

Gene Wiki entry for RPL21 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL21 Gene

Genomics for RPL21 Gene

Genomic Location for RPL21 Gene

Start:
27,251,309 bp from pter
End:
27,256,691 bp from pter
Size:
5,383 bases
Orientation:
Plus strand

Genomic View for RPL21 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21 Gene

Regulatory Elements for RPL21 Gene

Proteins for RPL21 Gene

  • Protein details for RPL21 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P46778-RL21_HUMAN
    Recommended name:
    60S ribosomal protein L21
    Protein Accession:
    P46778
    Secondary Accessions:
    • Q16699

    Protein attributes for RPL21 Gene

    Size:
    160 amino acids
    Molecular mass:
    18565 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPL21 Gene

neXtProt entry for RPL21 Gene

Proteomics data for RPL21 Gene at MOPED

Post-translational modifications for RPL21 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys21 and Lys43

Other Protein References for RPL21 Gene

No data available for DME Specific Peptides for RPL21 Gene

Domains for RPL21 Gene

Gene Families for RPL21 Gene

HGNC:
  • RPL :L ribosomal proteins

Protein Domains for RPL21 Gene

UniProtKB/Swiss-Prot:

RL21_HUMAN
Family:
  • Belongs to the ribosomal protein L21e family.:
    • P46778
genes like me logo Genes that share domains with RPL21: view

Function for RPL21 Gene

Molecular function for RPL21 Gene

GENATLAS Biochemistry: 60S ribosomal protein L21,gene or pseudogene

Gene Ontology (GO) - Molecular Function for RPL21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS 7772601
GO:0003735 structural constituent of ribosome NAS 12962325
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RPL21: view
genes like me logo Genes that share phenotypes with RPL21: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RPL21 Gene

Localization for RPL21 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL21 Gene COMPARTMENTS Subcellular localization image for RPL21 gene
Compartment Confidence
cytosol 5
chloroplast 2
nucleus 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RPL21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
GO:0005829 cytosol TAS --
GO:0005840 ribosome --
genes like me logo Genes that share ontologies with RPL21: view

Pathways for RPL21 Gene

genes like me logo Genes that share pathways with RPL21: view

Pathways by source for RPL21 Gene

1 GeneGo (Thomson Reuters Life Sciences Research) pathway for RPL21 Gene
1 BioSystems pathway for RPL21 Gene

Gene Ontology (GO) - Biological Process for RPL21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006412 translation TAS --
GO:0006413 translational initiation TAS --
GO:0006414 translational elongation TAS --
GO:0006415 translational termination TAS --
genes like me logo Genes that share ontologies with RPL21: view

Transcripts for RPL21 Gene

Unigene Clusters for RPL21 Gene

Ribosomal protein L21:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21 Gene

No ASD Table

Relevant External Links for RPL21 Gene

GeneLoc Exon Structure for
RPL21
ECgene alternative splicing isoforms for
RPL21

Expression for RPL21 Gene

mRNA expression in normal human tissues for RPL21 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RPL21 Gene

SOURCE GeneReport for Unigene cluster for RPL21 Gene Hs.381123

genes like me logo Genes that share expressions with RPL21: view

Orthologs for RPL21 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 100 (a)
OneToMany
-- 37
  • 100 (a)
OneToMany
cow
(Bos Taurus)
Mammalia RPL21 36
  • 93.12 (n)
  • 98.75 (a)
RPL21 37
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 37
  • 99 (a)
OneToMany
RPL21 36
  • 95.21 (n)
  • 100 (a)
RPL21 37
  • 99 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rpl21 36
  • 89.17 (n)
  • 99.37 (a)
Rpl21 16
Rpl21 37
  • 99 (a)
OneToMany
Rpl21-ps4 37
  • 93 (a)
OneToMany
Rpl21-ps6 37
  • 94 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 97 (a)
OneToMany
-- 37
  • 99 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia RPL21 37
  • 76 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rpl21 36
  • 88.75 (n)
  • 98.12 (a)
chicken
(Gallus gallus)
Aves RPL21 36
  • 85 (n)
  • 94.37 (a)
RPL21 37
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPL21 37
  • 94 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl21 36
  • 78.12 (n)
  • 88.75 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8730 36
zebrafish
(Danio rerio)
Actinopterygii -- 36
rpl21 36
  • 76.46 (n)
  • 85 (a)
rpl21 37
  • 85 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012138 36
  • 60.17 (n)
  • 63.52 (a)
fruit fly
(Drosophila melanogaster)
Insecta RpL21 36
  • 67.3 (n)
  • 72.96 (a)
RpL21 37
  • 73 (a)
OneToOne
CG12775 38
  • 72 (a)
worm
(Caenorhabditis elegans)
Secernentea rpl-21 36
  • 59.79 (n)
  • 63.75 (a)
rpl-21 37
  • 63 (a)
OneToOne
rpl-21 38
  • 63 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AEL254W 36
  • 59.45 (n)
  • 57.96 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL21A 37
  • 59 (a)
OneToMany
RPL21A 39
RPL21A 39
RPL21A 39
RPL21B 36
  • 60.93 (n)
  • 59.87 (a)
RPL21B 37
  • 59 (a)
OneToMany
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E23651g 36
  • 60.08 (n)
  • 59.87 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G09590 36
  • 56.26 (n)
  • 48.41 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.8168 36
rice
(Oryza sativa)
Liliopsida Os03g0141000 36
  • 52.65 (n)
  • 49.04 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU01948 36
  • 55.41 (n)
  • 57.32 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl2102 36
  • 61.78 (n)
  • 59.24 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11307 37
  • 71 (a)
OneToOne
Species with no ortholog for RPL21:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL21 Gene

ENSEMBL:
Gene Tree for RPL21 (if available)
TreeFam:
Gene Tree for RPL21 (if available)

Paralogs for RPL21 Gene

Selected SIMAP similar genes for RPL21 Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for RPL21 Gene

genes like me logo Genes that share paralogs with RPL21: view

No data available for Paralogs for RPL21 Gene

Variants for RPL21 Gene

Sequence variations from dbSNP and Humsavar for RPL21 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs1855252 -- 27,256,991(+) GAGAC(A/G)GGGTT downstream-variant-500B
rs3094291 -- 27,252,731(+) TAACA(A/G)TGGTT intron-variant
rs28631849 -- 27,252,708(+) GCATT(A/T)AAAGG intron-variant
rs57114181 -- 27,256,682(+) TTAAT(-/G)TATTT downstream-variant-500B
rs57568768 -- 27,256,814(+) AAAAT(-/A)TTTTT downstream-variant-500B

Relevant External Links for RPL21 Gene

HapMap Linkage Disequilibrium report
RPL21
Human Gene Mutation Database (HGMD)
RPL21

No data available for Structural Variations from Database of Genomic Variants (DGV) for RPL21 Gene

Disorders for RPL21 Gene

UniProtKB/Swiss-Prot

RL21_HUMAN
  • Hypotrichosis 12 (HYPT12) [MIM:615885]: A form of hypotrichosis, a condition characterized by the presence of less than the normal amount of hair and abnormal hair follicles and shafts, which are thin and atrophic. The extent of scalp and body hair involvement can be very variable, within as well as between families. HYPT12 patients have normal scalp hair density at birth. Hair loss begins during the first 6 months of life and gradually progresses to nearly complete loss of scalp hair. The remaining hairs grow slowly and are thin, sparse, dry, and fragile. Body hair, axillary and pubic hair, eyebrows and eyelashes are also sparse or absent. {ECO:0000269 PubMed:21412954}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(1) University of Copenhagen DISEASES for RPL21 Gene

Relevant External Links for RPL21

Genetic Association Database (GAD)
RPL21
genes like me logo Genes that share disorders with RPL21: view

Publications for RPL21 Gene

  1. Cloning, sequencing and expression of the L5, L21, L27a, L28, S5, S9, S10 and S29 human ribosomal protein mRNAs. (PMID: 7772601) Frigerio J.-M. … Iovanna J.L. (Biochim. Biophys. Acta 1995) 2 3 4 23
  2. Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing. (PMID: 12962325) Odintsova T.I. … Karpova G.G. (J. Protein Chem. 2003) 3 4 23
  3. Decreased expression of ribosomal proteins in human age-related cataract. (PMID: 11773032) Zhang W. … Kantorow M. (Invest. Ophthalmol. Vis. Sci. 2002) 3 23
  4. A physical map and candidate genes in the BRCA1 region on chromosome 17q12-21. (PMID: 7951316) Albertsen H.M. … White R. (Nat. Genet. 1994) 3 4
  5. A map of 75 human ribosomal protein genes. (PMID: 9582194) Kenmochi N. … Page D.C. (Genome Res. 1998) 3 4

Products for RPL21 Gene

Sources for RPL21 Gene

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