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Aliases for RPL18 Gene

Subcategory (RNA class) for RPL18 Gene

lncRNA

Aliases for RPL18 Gene

  • Ribosomal Protein L18 2 3
  • 60S Ribosomal Protein L18 2 3
  • L18 3

External Ids for RPL18 Gene

ORGUL Members for RPL18 Gene

Previous GeneCards Identifiers for RPL18 Gene

  • GC19M049758
  • GC19M049486
  • GC19M053790
  • GC19M053810
  • GC19M053649
  • GC19M049118
  • GC19M045500

Summaries for RPL18 Gene

Entrez Gene Summary for RPL18 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a member of the L18E family of ribosomal proteins that is a component of the 60S subunit. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jul 2012]

GeneCards Summary for RPL18 Gene

RPL18 (Ribosomal Protein L18) is a Protein Coding gene, and is affiliated with the lncRNA class. Among its related pathways are Disease and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include RNA binding and structural constituent of ribosome.

Gene Wiki entry for RPL18 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL18 Gene

Genomics for RPL18 Gene

Regulatory Elements for RPL18 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RPL18 Gene

Start:
48,615,327 bp from pter
End:
48,619,536 bp from pter
Size:
4,210 bases
Orientation:
Minus strand

Genomic View for RPL18 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL18 Gene

Proteins for RPL18 Gene

  • Protein details for RPL18 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q07020-RL18_HUMAN
    Recommended name:
    60S ribosomal protein L18
    Protein Accession:
    Q07020
    Secondary Accessions:
    • F8VWC5
    • Q8WTZ6

    Protein attributes for RPL18 Gene

    Size:
    188 amino acids
    Molecular mass:
    21634 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPL18 Gene

    Alternative splice isoforms for RPL18 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RPL18 Gene

Proteomics data for RPL18 Gene at MOPED

Post-translational modifications for RPL18 Gene

  • Ubiquitination at Lys30, Lys49, Lys78, Lys99, Lys119, Lys132, Lys154, and Lys164
  • Modification sites at PhosphoSitePlus

Other Protein References for RPL18 Gene

No data available for DME Specific Peptides for RPL18 Gene

Domains for RPL18 Gene

Gene Families for RPL18 Gene

HGNC:
  • RPL :L ribosomal proteins

Protein Domains for RPL18 Gene

Suggested Antigen Peptide Sequences for RPL18 Gene

Graphical View of Domain Structure for InterPro Entry

Q07020

UniProtKB/Swiss-Prot:

RL18_HUMAN :
  • Q07020
Family:
  • Belongs to the ribosomal protein L18e family.
genes like me logo Genes that share domains with RPL18: view

Function for RPL18 Gene

Molecular function for RPL18 Gene

GENATLAS Biochemistry: 60S ribosomal protein L18,21kDa

Gene Ontology (GO) - Molecular Function for RPL18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS 8218404
GO:0003735 structural constituent of ribosome NAS 12962325
genes like me logo Genes that share ontologies with RPL18: view
genes like me logo Genes that share phenotypes with RPL18: view

miRNA for RPL18 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RPL18

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RPL18 Gene

Localization for RPL18 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RPL18 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL18 Gene COMPARTMENTS Subcellular localization image for RPL18 gene
Compartment Confidence
cytosol 5
nucleus 3

Gene Ontology (GO) - Cellular Components for RPL18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
GO:0005829 cytosol TAS --
GO:0005840 ribosome --
genes like me logo Genes that share ontologies with RPL18: view

Pathways for RPL18 Gene

genes like me logo Genes that share pathways with RPL18: view

Pathways by source for RPL18 Gene

1 KEGG pathway for RPL18 Gene
1 GeneGo (Thomson Reuters) pathway for RPL18 Gene

Gene Ontology (GO) - Biological Process for RPL18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006412 translation TAS --
GO:0006413 translational initiation TAS --
GO:0006414 translational elongation TAS --
GO:0006415 translational termination TAS --
genes like me logo Genes that share ontologies with RPL18: view

Transcripts for RPL18 Gene

Unigene Clusters for RPL18 Gene

Ribosomal protein L18:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RPL18

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL18 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8
SP1: - -
SP2: - -
SP3: -
SP4: -
SP5: -

Relevant External Links for RPL18 Gene

GeneLoc Exon Structure for
RPL18
ECgene alternative splicing isoforms for
RPL18

Expression for RPL18 Gene

mRNA expression in normal human tissues for RPL18 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RPL18 Gene

SOURCE GeneReport for Unigene cluster for RPL18 Gene Hs.515517

genes like me logo Genes that share expressions with RPL18: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPL18 Gene

Orthologs for RPL18 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL18 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPL18 35
  • 98.58 (n)
  • 100 (a)
RPL18 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RPL18 35
  • 90.25 (n)
  • 98.4 (a)
RPL18 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RPL18 35
  • 90.78 (n)
  • 98.94 (a)
RPL18 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rpl18 35
  • 88.65 (n)
  • 96.28 (a)
Rpl18 16
Rpl18 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 67 (a)
OneToMany
RPL18 36
  • 94 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia RPL18 36
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rpl18 35
  • 88.48 (n)
  • 96.81 (a)
lizard
(Anolis carolinensis)
Reptilia RPL18 36
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl18 35
  • 74.11 (n)
  • 88.3 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8673 35
zebrafish
(Danio rerio)
Actinopterygii rpl18 35
  • 75.43 (n)
  • 85.71 (a)
rpl18 36
  • 86 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta RL18_ANOGA 35
  • 65.07 (n)
  • 67.55 (a)
fruit fly
(Drosophila melanogaster)
Insecta RpL18 35
  • 62.29 (n)
  • 68.57 (a)
RpL18 36
  • 69 (a)
OneToOne
CG8615 37
  • 69 (a)
worm
(Caenorhabditis elegans)
Secernentea rpl-18 35
  • 58.87 (n)
  • 65.96 (a)
rpl-18 36
  • 66 (a)
OneToOne
rpl-18 37
  • 65 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ADL157C 35
  • 54.07 (n)
  • 54.65 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL18A 36
  • 55 (a)
OneToMany
RPL18B 35
  • 54.07 (n)
  • 55.23 (a)
RPL18B 36
  • 55 (a)
OneToMany
RPL18B 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A07227g 35
  • 51.55 (n)
  • 53.49 (a)
soybean
(Glycine max)
eudicotyledons Gma.1197 35
thale cress
(Arabidopsis thaliana)
eudicotyledons RPL18 35
  • 58.57 (n)
  • 65.32 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.12865 35
rice
(Oryza sativa)
Liliopsida Os05g0155100 35
  • 61.3 (n)
  • 65.52 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU03988 35
  • 63.53 (n)
  • 61.76 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl1802 35
  • 56.98 (n)
  • 59.88 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4926 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4938 36
  • 73 (a)
OneToOne
Species with no ortholog for RPL18:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL18 Gene

ENSEMBL:
Gene Tree for RPL18 (if available)
TreeFam:
Gene Tree for RPL18 (if available)

Paralogs for RPL18 Gene

Selected SIMAP similar genes for RPL18 Gene using alignment to 9 proteins:

genes like me logo Genes that share paralogs with RPL18: view

No data available for Paralogs for RPL18 Gene

Variants for RPL18 Gene

Sequence variations from dbSNP and Humsavar for RPL18 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs369880 -- 48,617,177(+) CAGTC(C/T)AAGCT intron-variant
rs11382518 -- 48,616,996(+) AAAAA(-/A)TGCAG intron-variant
rs34066859 -- 48,617,249(+) CTGCC(-/T)TCCCT intron-variant
rs35665100 -- 48,617,050(+) GACAT(-/A)AAAAC intron-variant
rs140705084 -- 48,617,275(+) CCCAG(C/T)GGCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL18 Gene

Variant ID Type Subtype PubMed ID
nsv9739 CNV Gain+Loss 18304495
dgv3966n71 CNV Loss 21882294
nsv912225 CNV Loss 21882294
dgv3967n71 CNV Loss 21882294
nsv912234 CNV Loss 21882294
esv1003432 CNV Gain 20482838

Relevant External Links for RPL18 Gene

HapMap Linkage Disequilibrium report
RPL18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL18 Gene

Disorders for RPL18 Gene

Relevant External Links for RPL18

Genetic Association Database (GAD)
RPL18
Human Genome Epidemiology (HuGE) Navigator
RPL18
genes like me logo Genes that share disorders with RPL18: view

No data available for UniProtKB/Swiss-Prot for RPL18 Gene

Publications for RPL18 Gene

  1. Nucleotide and deduced amino acid sequence of human ribosomal protein L18. (PMID: 8218404) Puder M. … Chen L.B. (Biochim. Biophys. Acta 1993) 2 3 4 23
  2. Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing. (PMID: 12962325) Odintsova T.I. … Karpova G.G. (J. Protein Chem. 2003) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PMID: 16964243) Beausoleil S.A. … Gygi S.P. (Nat. Biotechnol. 2006) 3 4
  5. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M. … Kenmochi N. (Genome Res. 2002) 3 4

Products for RPL18 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL18
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RPL18
    • Block miRNA regulation of RPL18 using miScript Target Protectors

    Sources for RPL18 Gene

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