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Aliases for RPL9 Gene

Aliases for RPL9 Gene

  • Ribosomal Protein L9 2 3
  • RPL9 RPL9P7 RPL9P8 RPL9P9 4
  • 60S Ribosomal Protein L9 3
  • NPC-A-16 3
  • L9 3

External Ids for RPL9 Gene

Summaries for RPL9 Gene

Entrez Gene Summary for RPL9 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L6P family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Two alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL9 Gene

RPL9 (Ribosomal Protein L9) is a Protein Coding gene. Among its related pathways are Disease and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include RNA binding and rRNA binding.

Gene Wiki entry for RPL9 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL9 Gene

Genomics for RPL9 Gene

Genomic Location for RPL9 Gene

Start:
39,454,124 bp from pter
End:
39,458,948 bp from pter
Size:
4,825 bases
Orientation:
Minus strand

Genomic View for RPL9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL9 Gene

Regulatory Elements for RPL9 Gene

Proteins for RPL9 Gene

  • Protein details for RPL9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P32969-RL9_HUMAN
    Recommended name:
    60S ribosomal protein L9
    Protein Accession:
    P32969
    Secondary Accessions:

    Protein attributes for RPL9 Gene

    Size:
    192 amino acids
    Molecular mass:
    21863 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPL9 Gene

neXtProt entry for RPL9 Gene

Proteomics data for RPL9 Gene at MOPED

Post-translational modifications for RPL9 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys21, Lys121, Lys174, and Lys184

Other Protein References for RPL9 Gene

No data available for DME Specific Peptides for RPL9 Gene

Domains for RPL9 Gene

Gene Families for RPL9 Gene

HGNC:
  • RPL :L ribosomal proteins

Protein Domains for RPL9 Gene

UniProtKB/Swiss-Prot:

RL9_HUMAN
Family:
  • Belongs to the ribosomal protein L6P family.:
    • P32969
genes like me logo Genes that share domains with RPL9: view

Function for RPL9 Gene

Molecular function for RPL9 Gene

GENATLAS Biochemistry: ribosomal protein L9

Gene Ontology (GO) - Molecular Function for RPL9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS 8597601
GO:0003735 structural constituent of ribosome NAS 12962325
GO:0005515 protein binding IPI 16189514
GO:0019843 rRNA binding IEA --
genes like me logo Genes that share ontologies with RPL9: view
genes like me logo Genes that share phenotypes with RPL9: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RPL9 Gene

Localization for RPL9 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL9 Gene COMPARTMENTS Subcellular localization image for RPL9 gene
Compartment Confidence
cytosol 5
nucleus 4
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RPL9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
GO:0005829 cytosol TAS --
GO:0005840 ribosome TAS 8597601
genes like me logo Genes that share ontologies with RPL9: view

Pathways for RPL9 Gene

genes like me logo Genes that share pathways with RPL9: view

Pathways by source for RPL9 Gene

1 GeneGo (Thomson Reuters Life Sciences Research) pathway for RPL9 Gene
1 BioSystems pathway for RPL9 Gene

Gene Ontology (GO) - Biological Process for RPL9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006412 translation TAS --
GO:0006413 translational initiation TAS --
GO:0006414 translational elongation TAS --
GO:0006415 translational termination TAS --
genes like me logo Genes that share ontologies with RPL9: view

Compounds for RPL9 Gene

(3) Novoseek inferred chemical compound relationships for RPL9 Gene

Compound -log(P) Hits PubMed IDs
urea 48.2 2
guanidine hydrochloride 38.7 1
amide 25.1 1
genes like me logo Genes that share compounds with RPL9: view

Transcripts for RPL9 Gene

Unigene Clusters for RPL9 Gene

Ribosomal protein L9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL9 Gene

No ASD Table

Relevant External Links for RPL9 Gene

GeneLoc Exon Structure for
RPL9
ECgene alternative splicing isoforms for
RPL9

Expression for RPL9 Gene

mRNA expression in normal human tissues for RPL9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RPL9 Gene

SOURCE GeneReport for Unigene cluster for RPL9 Gene Hs.412370

genes like me logo Genes that share expressions with RPL9: view

Orthologs for RPL9 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPL9 36
  • 99.65 (n)
  • 100 (a)
RPL9 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 97 (a)
OneToMany
-- 37
  • 98 (a)
OneToMany
-- 37
  • 97 (a)
OneToMany
-- 37
  • 74 (a)
OneToMany
-- 37
  • 96 (a)
OneToMany
-- 37
  • 97 (a)
OneToMany
RPL9 37
  • 99 (a)
OneToMany
dog
(Canis familiaris)
Mammalia RPL9 36
  • 92.71 (n)
  • 100 (a)
RPL9 37
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rpl9 36
  • 89.93 (n)
  • 98.96 (a)
Rpl9 16
Rpl9 37
  • 99 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia RPL9 37
  • 98 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RPL9 37
  • 96 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100360449 36
  • 91.49 (n)
  • 98.96 (a)
chicken
(Gallus gallus)
Aves RPL9 36
  • 81.6 (n)
  • 94.79 (a)
RPL9 37
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPL9 37
  • 95 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia rpl9-prov 36
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl9 36
  • 83.51 (n)
  • 92.71 (a)
Str.2012 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10591 36
zebrafish
(Danio rerio)
Actinopterygii Dr.24810 36
rpl9 36
  • 75.04 (n)
  • 90.58 (a)
rpl9 37
  • 89 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009508 36
  • 59.82 (n)
  • 65.79 (a)
fruit fly
(Drosophila melanogaster)
Insecta RpL9 36
  • 61.8 (n)
  • 65.95 (a)
RpL9 37
  • 65 (a)
OneToOne
RpL9 38
  • 65 (a)
worm
(Caenorhabditis elegans)
Secernentea rpl-9 36
  • 58.38 (n)
  • 63.49 (a)
rpl-9 37
  • 63 (a)
OneToOne
rpl-9 38
  • 62 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ADL290W 36
  • 57.22 (n)
  • 51.87 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL9A 37
  • 49 (a)
OneToMany
RPL9B 36
  • 57.12 (n)
  • 51.35 (a)
RPL9B 37
  • 49 (a)
OneToMany
RPL9B 39
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F04499g 36
  • 58.55 (n)
  • 49.74 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7563 36
soybean
(Glycine max)
eudicotyledons Gma.4113 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G10450 36
  • 58.82 (n)
  • 58.29 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.590 36
corn
(Zea mays)
Liliopsida Zm.5244 36
rice
(Oryza sativa)
Liliopsida Os.4982 36
Os09g0485900 36
  • 55.32 (n)
  • 57.98 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU02744 36
  • 57.12 (n)
  • 56.76 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl902 36
  • 55.44 (n)
  • 52.94 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11337 37
  • 64 (a)
OneToOne
Species with no ortholog for RPL9:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL9 Gene

ENSEMBL:
Gene Tree for RPL9 (if available)
TreeFam:
Gene Tree for RPL9 (if available)

Paralogs for RPL9 Gene

Selected SIMAP similar genes for RPL9 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with RPL9: view

No data available for Paralogs for RPL9 Gene

Variants for RPL9 Gene

Sequence variations from dbSNP and Humsavar for RPL9 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs1015450 -- 39,456,237(+) TTAAG(C/T)AGCAC intron-variant
rs1463478 -- 39,454,772(-) ATTAG(C/T)TTTTT intron-variant
rs1802628 -- 39,454,158(-) ATGCA(A/G)TAAAA utr-variant-3-prime
rs1965260 -- 39,455,302(-) AAAAC(C/G)CTTAT intron-variant
rs1985998 -- 39,455,088(-) acagg(C/T)gtgag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL9 Gene

Variant ID Type Subtype PubMed ID
nsv878942 CNV Loss 21882294
nsv878943 CNV Gain 21882294

Relevant External Links for RPL9 Gene

HapMap Linkage Disequilibrium report
RPL9

Disorders for RPL9 Gene

No disorders were found for RPL9 Gene.

No data available for UniProtKB/Swiss-Prot for RPL9 Gene

Publications for RPL9 Gene

  1. Structural organization and chromosomal localization of the human ribosomal protein L9 gene. (PMID: 8597601) Mazuruk K. … Rodriguez I.R. (Biochim. Biophys. Acta 1996) 2 3 4 23
  2. A new human ribosomal protein sequence, homologue of rat L9. (PMID: 8415001) Hori N. … Matsubara K. (Nucleic Acids Res. 1993) 2 3 4
  3. A map of 75 human ribosomal protein genes. (PMID: 9582194) Kenmochi N. … Page D.C. (Genome Res. 1998) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Nucleolar proteome dynamics. (PMID: 15635413) Andersen J.S. … Mann M. (Nature 2005) 3

Products for RPL9 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL9
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for RPL9
  • Block miRNA regulation of RPL9 using miScript Target Protectors
  • Addgene plasmids for RPL9

Sources for RPL9 Gene

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