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Aliases for RPL4 Gene

Aliases for RPL4 Gene

  • Ribosomal Protein L4 2 3
  • 60S Ribosomal Protein L4 2 3
  • 60S Ribosomal Protein L1 3 4
  • RPL1 4
  • L4 3

External Ids for RPL4 Gene

Summaries for RPL4 Gene

Entrez Gene Summary for RPL4 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L4E family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL4 Gene

RPL4 (Ribosomal Protein L4) is a Protein Coding gene. Diseases associated with RPL4 include cat-scratch disease. Among its related pathways are Disease and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include RNA binding and structural constituent of ribosome.

Gene Wiki entry for RPL4 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL4 Gene

Genomics for RPL4 Gene

Genomic Location for RPL4 Gene

Start:
66,498,015 bp from pter
End:
66,524,532 bp from pter
Size:
26,518 bases
Orientation:
Minus strand

Genomic View for RPL4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL4 Gene

Regulatory Elements for RPL4 Gene

Proteins for RPL4 Gene

  • Protein details for RPL4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P36578-RL4_HUMAN
    Recommended name:
    60S ribosomal protein L4
    Protein Accession:
    P36578
    Secondary Accessions:
    • A8K502
    • P39029
    • Q4VBR0
    • Q969Z9

    Protein attributes for RPL4 Gene

    Size:
    427 amino acids
    Molecular mass:
    47697 Da
    Quaternary structure:
    • May bind IPO9 with low affinity. Interacts with RBM3 (By similarity).

    Three dimensional structures from OCA and Proteopedia for RPL4 Gene

neXtProt entry for RPL4 Gene

Proteomics data for RPL4 Gene at MOPED

Post-translational modifications for RPL4 Gene

  • Citrullinated by PADI4.
  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys14, Lys20, Lys29, Lys46, Lys106, Lys140, Lys157, Lys162, Lys165, Lys175, Lys219, Lys234, Lys239, Lys259, Lys274, Lys283, Lys294, Lys320, Lys327, Lys333, Lys353, and Lys364

Other Protein References for RPL4 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for RPL4 Gene

Domains for RPL4 Gene

Gene Families for RPL4 Gene

HGNC:
  • RPL :L ribosomal proteins

UniProtKB/Swiss-Prot:

RL4_HUMAN
Family:
  • Belongs to the ribosomal protein L4P family.:
    • P36578
genes like me logo Genes that share domains with RPL4: view

Function for RPL4 Gene

Molecular function for RPL4 Gene

GENATLAS Biochemistry: 60S ribosomal protein L4

Gene Ontology (GO) - Molecular Function for RPL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS 8268230
GO:0003735 structural constituent of ribosome NAS 12962325
GO:0005515 protein binding IPI 22720776
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RPL4: view
genes like me logo Genes that share phenotypes with RPL4: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RPL4 Gene

Localization for RPL4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL4 Gene COMPARTMENTS Subcellular localization image for RPL4 gene
Compartment Confidence
cytosol 5
nucleus 4
endoplasmic reticulum 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RPL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
GO:0005829 cytosol TAS --
GO:0005840 ribosome --
genes like me logo Genes that share ontologies with RPL4: view

Pathways for RPL4 Gene

genes like me logo Genes that share pathways with RPL4: view

Pathways by source for RPL4 Gene

1 GeneGo (Thomson Reuters Life Sciences Research) pathway for RPL4 Gene

Gene Ontology (GO) - Biological Process for RPL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006412 translation TAS --
GO:0006413 translational initiation TAS --
GO:0006414 translational elongation TAS --
GO:0006415 translational termination TAS --
genes like me logo Genes that share ontologies with RPL4: view

Compounds for RPL4 Gene

(2) Novoseek inferred chemical compound relationships for RPL4 Gene

Compound -log(P) Hits PubMed IDs
erythromycin 64.4 4
azithromycin 56.7 1
genes like me logo Genes that share compounds with RPL4: view

Transcripts for RPL4 Gene

Unigene Clusters for RPL4 Gene

Ribosomal protein L4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL4 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c · 5d · 5e ^ 6a · 6b ^ 7a · 7b · 7c · 7d ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b
SP1: - - - - -
SP2: -
SP3: - - - -
SP4: - -
SP5: - - -
SP6: - -
SP7:
SP8: - - - -
SP9:
SP10: -

Relevant External Links for RPL4 Gene

GeneLoc Exon Structure for
RPL4
ECgene alternative splicing isoforms for
RPL4

Expression for RPL4 Gene

mRNA expression in normal human tissues for RPL4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RPL4 Gene

SOURCE GeneReport for Unigene cluster for RPL4 Gene Hs.186350

genes like me logo Genes that share expressions with RPL4: view

Orthologs for RPL4 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPL4 36
  • 88.89 (n)
  • 86.76 (a)
RPL4 37
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 89 (a)
OneToMany
RPL4 36
  • 91.55 (n)
  • 95.97 (a)
RPL4 37
  • 96 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 95 (a)
OneToMany
RPL4 37
  • 96 (a)
OneToMany
RPL4 37
  • 96 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rpl4 36
  • 85.52 (n)
  • 92.12 (a)
Rpl4 16
Rpl4 37
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RPL4 37
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 93 (a)
OneToMany
-- 37
  • 97 (a)
OneToMany
-- 37
  • 75 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Rpl4 36
  • 87.18 (n)
  • 93.27 (a)
chicken
(Gallus gallus)
Aves RPL4 36
  • 80.73 (n)
  • 90.14 (a)
RPL4 37
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPL4 37
  • 95 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC64318 36
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl4 36
  • 76.58 (n)
  • 89.52 (a)
Str.8811 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.806 36
zebrafish
(Danio rerio)
Actinopterygii rpl4 36
  • 76.15 (n)
  • 85.34 (a)
rpl4 37
  • 80 (a)
OneToOne
wufa97a02 36
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002306 36
  • 59.62 (n)
  • 65.11 (a)
fruit fly
(Drosophila melanogaster)
Insecta RpL4 36
  • 61.88 (n)
  • 68.91 (a)
RpL4 37
  • 62 (a)
OneToOne
RpL1 38
  • 62 (a)
worm
(Caenorhabditis elegans)
Secernentea rpl-4 36
  • 58.59 (n)
  • 60.3 (a)
rpl-4 37
  • 58 (a)
OneToOne
rpl-4 38
  • 58 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AAR191C 36
  • 61.13 (n)
  • 61.33 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL4A 36
  • 60.59 (n)
  • 61.7 (a)
RPL4A 37
  • 57 (a)
OneToMany
RPL4A 39
RPL4B 37
  • 57 (a)
OneToMany
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0B07139g 36
  • 60.08 (n)
  • 60.79 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.1107 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G09630 36
  • 57.48 (n)
  • 60.23 (a)
rice
(Oryza sativa)
Liliopsida Os.8767 36
Os07g0180900 36
  • 55.65 (n)
  • 57.3 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU03757 36
  • 56.5 (n)
  • 55.89 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl401 36
  • 60.37 (n)
  • 61.65 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5831 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4071 37
  • 67 (a)
OneToOne
Species with no ortholog for RPL4:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL4 Gene

ENSEMBL:
Gene Tree for RPL4 (if available)
TreeFam:
Gene Tree for RPL4 (if available)

Paralogs for RPL4 Gene

genes like me logo Genes that share paralogs with RPL4: view

No data available for Paralogs for RPL4 Gene

Variants for RPL4 Gene

Sequence variations from dbSNP and Humsavar for RPL4 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs28706938 -- 66,500,423(+) ACCAA(A/G)GAACA intron-variant
rs35270565 -- 66,500,656(+) ACAAG(-/C)CTGTA intron-variant
rs35435814 -- 66,499,979(+) GATCA(A/C/T)GCCAT intron-variant
rs72752414 -- 66,500,252(+) ATAGT(A/G)TAGGG intron-variant
rs78521229 -- 66,500,639(+) TAGCC(A/G)GGTGT intron-variant

Relevant External Links for RPL4 Gene

HapMap Linkage Disequilibrium report
RPL4

No data available for Structural Variations from Database of Genomic Variants (DGV) for RPL4 Gene

Disorders for RPL4 Gene

(1) MalaCards Diseases for RPL4 Gene

Search for RPL4 Gene in MalaCards »

(1) University of Copenhagen DISEASES for RPL4 Gene

(1) Novoseek inferred disease relationships for RPL4 Gene

Disease -log(P) Hits PubMed IDs
cancer 0 1
genes like me logo Genes that share disorders with RPL4: view

No data available for UniProtKB/Swiss-Prot for RPL4 Gene

Publications for RPL4 Gene

  1. Human ribosomal protein L4: cloning and sequencing of the cDNA and primary structure of the protein. (PMID: 8268230) Bagni C. … Amaldi F. (Biochim. Biophys. Acta 1993) 2 3 4 23
  2. A map of 75 human ribosomal protein genes. (PMID: 9582194) Kenmochi N. … Page D.C. (Genome Res. 1998) 2 3
  3. Importins fulfill a dual function as nuclear import receptors and cytoplasmic chaperones for exposed basic domains. (PMID: 11823430) Jaekel S. … Goerlich D. (EMBO J. 2002) 3 4
  4. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M. … Kenmochi N. (Genome Res. 2002) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for RPL4 Gene

Sources for RPL4 Gene

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