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Aliases for PTPRB Gene

Aliases for PTPRB Gene

  • Protein Tyrosine Phosphatase, Receptor Type, B 2 3
  • Vascular Endothelial Protein Tyrosine Phosphatase 3 4
  • EC 3.1.3.48 4 63
  • R-PTP-BETA 3 4
  • VE-PTP 3 4
  • PTPB 3 4
  • Protein Tyrosine Phosphatase, Receptor Type, Beta Polypeptide 3
  • Receptor-Type Tyrosine-Protein Phosphatase Beta 3
  • Protein-Tyrosine Phosphatase Beta 4
  • HPTP-BETA 3
  • HPTPB 3
  • VEPTP 3

External Ids for PTPRB Gene

Previous HGNC Symbols for PTPRB Gene

  • PTPB

Previous GeneCards Identifiers for PTPRB Gene

  • GC12M070786
  • GC12M070631
  • GC12M069201
  • GC12M070910
  • GC12M067960

Summaries for PTPRB Gene

Entrez Gene Summary for PTPRB Gene

  • The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains an extracellular domain, a single transmembrane segment and one intracytoplasmic catalytic domain, thus belongs to receptor type PTP. The extracellular region of this PTP is composed of multiple fibronectin type_III repeats, which was shown to interact with neuronal receptor and cell adhesion molecules, such as contactin and tenascin C. This protein was also found to interact with sodium channels, and thus may regulate sodium channels by altering tyrosine phosphorylation status. The functions of the interaction partners of this protein implicate the roles of this PTP in cell adhesion, neurite growth, and neuronal differentiation. Alternate transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011]

GeneCards Summary for PTPRB Gene

PTPRB (Protein Tyrosine Phosphatase, Receptor Type, B) is a Protein Coding gene. Among its related pathways are PAK Pathway and Activation of cAMP-Dependent PKA. GO annotations related to this gene include transmembrane receptor protein tyrosine phosphatase activity. An important paralog of this gene is PTPRO.

UniProtKB/Swiss-Prot for PTPRB Gene

  • Plays an important role in blood vessel remodeling and angiogenesis. Not necessary for the initial formation of blood vessels, but is essential for their maintenance and remodeling. Can induce dephosphorylation of TEK/TIE2, CDH5/VE-cadherin and KDR/VEGFR-2. Regulates angiopoietin-TIE2 signaling in endothelial cells. Acts as a negative regulator of TIE2, and controls TIE2 driven endothelial cell proliferation, which in turn affects blood vessel remodeling during embryonic development and determines blood vessel size during perinatal growth. Essential for the maintenance of endothelial cell contact integrity and for the adhesive function of VE-cadherin in endothelial cells and this requires the presence of plakoglobin (By similarity).

Gene Wiki entry for PTPRB Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PTPRB Gene

Genomics for PTPRB Gene

Regulatory Elements for PTPRB Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for PTPRB Gene

Start:
70,515,866 bp from pter
End:
70,637,440 bp from pter
Size:
121,575 bases
Orientation:
Minus strand

Genomic View for PTPRB Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PTPRB Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPRB Gene

Proteins for PTPRB Gene

  • Protein details for PTPRB Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P23467-PTPRB_HUMAN
    Recommended name:
    Receptor-type tyrosine-protein phosphatase beta
    Protein Accession:
    P23467
    Secondary Accessions:
    • B7ZKS8
    • B7ZKT0
    • C9JX87
    • F5H3G6
    • Q14D85
    • Q3MIV7

    Protein attributes for PTPRB Gene

    Size:
    1997 amino acids
    Molecular mass:
    224301 Da
    Quaternary structure:
    • Monomer. Interacts with TEK. Interacts via fibronectin type-III 17 domain with CDH5 (By similarity).

    Three dimensional structures from OCA and Proteopedia for PTPRB Gene

    Alternative splice isoforms for PTPRB Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PTPRB Gene

Proteomics data for PTPRB Gene at MOPED

Selected DME Specific Peptides for PTPRB Gene

Post-translational modifications for PTPRB Gene

  • Glycosylation at Asn28, Asn53, Asn75, Asn172, Asn198, Asn267, Asn321, Asn414, Asn421, Asn479, Asn544, Asn574, Asn598, Asn652, Asn721, Asn829, Asn1040, Asn1096, Asn1163, Asn1185, Asn1212, Asn1274, Asn1367, Asn1470, Asn1474, and Asn1518
  • Modification sites at PhosphoSitePlus

Antibody Products

Domains for PTPRB Gene

Gene Families for PTPRB Gene

HGNC:
  • FN3 :Fibronectin type III domain containing
  • PTPR :Protein tyrosine phosphatases / Class I Cys-based PTPs : Transmembrane receptor-like
IUPHAR :

Graphical View of Domain Structure for InterPro Entry

P23467

UniProtKB/Swiss-Prot:

PTPRB_HUMAN :
  • P23467
Domain:
  • Contains 17 fibronectin type-III domains.
  • Contains 1 tyrosine-protein phosphatase domain.
Family:
  • Belongs to the protein-tyrosine phosphatase family. Receptor class 3 subfamily.
genes like me logo Genes that share domains with PTPRB: view

Function for PTPRB Gene

Molecular function for PTPRB Gene

GENATLAS Biochemistry:
protein tyrosine phosphatase,receptor-type,beta polypeptide
UniProtKB/Swiss-Prot CatalyticActivity:
Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
UniProtKB/Swiss-Prot Function:
Plays an important role in blood vessel remodeling and angiogenesis. Not necessary for the initial formation of blood vessels, but is essential for their maintenance and remodeling. Can induce dephosphorylation of TEK/TIE2, CDH5/VE-cadherin and KDR/VEGFR-2. Regulates angiopoietin-TIE2 signaling in endothelial cells. Acts as a negative regulator of TIE2, and controls TIE2 driven endothelial cell proliferation, which in turn affects blood vessel remodeling during embryonic development and determines blood vessel size during perinatal growth. Essential for the maintenance of endothelial cell contact integrity and for the adhesive function of VE-cadherin in endothelial cells and this requires the presence of plakoglobin (By similarity).
UniProtKB/Swiss-Prot Induction:
Up-regulated by hypoxia.

Enzyme Numbers (IUBMB) for PTPRB Gene

Gene Ontology (GO) - Molecular Function for PTPRB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004725 protein tyrosine phosphatase activity --
GO:0005001 transmembrane receptor protein tyrosine phosphatase activity TAS 2170109
GO:0005515 protein binding IPI 12840032
GO:0016791 phosphatase activity --
genes like me logo Genes that share ontologies with PTPRB: view
genes like me logo Genes that share phenotypes with PTPRB: view

Animal Model Products

miRNA for PTPRB Gene

miRTarBase miRNAs that target PTPRB

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PTPRB

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for PTPRB Gene

Localization for PTPRB Gene

Subcellular locations from UniProtKB/Swiss-Prot for PTPRB Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PTPRB Gene COMPARTMENTS Subcellular localization image for PTPRB gene
Compartment Confidence
plasma membrane 4
extracellular 2
cytoskeleton 1
cytosol 1
endoplasmic reticulum 1
golgi apparatus 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for PTPRB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane TAS 2170109
GO:0043235 receptor complex IDA 23382219
genes like me logo Genes that share ontologies with PTPRB: view

Pathways for PTPRB Gene

genes like me logo Genes that share pathways with PTPRB: view

Pathways by source for PTPRB Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for PTPRB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001525 angiogenesis IEA --
GO:0006470 protein dephosphorylation TAS 2170109
GO:0006796 phosphate-containing compound metabolic process TAS 2170109
GO:0016311 dephosphorylation IDA 19116766
GO:0035335 peptidyl-tyrosine dephosphorylation TAS 2170109
genes like me logo Genes that share ontologies with PTPRB: view

Compounds for PTPRB Gene

(1) HMDB Compounds for PTPRB Gene

Compound Synonyms Cas Number PubMed IDs
Phosphate
  • NFB Orthophosphate
14265-44-2

(5) Novoseek inferred chemical compound relationships for PTPRB Gene

Compound -log(P) Hits PubMed IDs
neurocan 82.1 3
tyrosine 69.8 49
chondroitin sulfate 57.6 2
phosphatidylinositol 10 1
sodium 4.65 5
genes like me logo Genes that share compounds with PTPRB: view

Transcripts for PTPRB Gene

Unigene Clusters for PTPRB Gene

Protein tyrosine phosphatase, receptor type, B:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PTPRB

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PTPRB Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19a · 19b ^ 20 ^
SP1: - - - -
SP2: -
SP3:
SP4:
SP5:
SP6:
SP7:

ExUns: 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:

Relevant External Links for PTPRB Gene

GeneLoc Exon Structure for
PTPRB
ECgene alternative splicing isoforms for
PTPRB

Expression for PTPRB Gene

mRNA expression in normal human tissues for PTPRB Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for PTPRB Gene

This gene is overexpressed in Platelet (32.5), Liver (13.5), and Pancreatic juice (11.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for PTPRB Gene

SOURCE GeneReport for Unigene cluster for PTPRB Gene Hs.434375

genes like me logo Genes that share expressions with PTPRB: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Expression partners for PTPRB Gene

Orthologs for PTPRB Gene

This gene was present in the common ancestor of animals.

Orthologs for PTPRB Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PTPRB 35
  • 88.48 (n)
  • 87.24 (a)
PTPRB 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PTPRB 35
  • 87.8 (n)
  • 87.9 (a)
PTPRB 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ptprb 35
  • 84.93 (n)
  • 86.01 (a)
Ptprb 16
Ptprb 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PTPRB 35
  • 98.37 (n)
  • 97.78 (a)
PTPRB 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ptprb 35
  • 84.63 (n)
  • 84.85 (a)
oppossum
(Monodelphis domestica)
Mammalia PTPRB 36
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PTPRB 36
  • 78 (a)
OneToOne
chicken
(Gallus gallus)
Aves PTPRB 35
  • 70.7 (n)
  • 69.17 (a)
PTPRB 36
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PTPRB 36
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ptprb 35
  • 65.08 (n)
  • 64.31 (a)
Str.12713 35
zebrafish
(Danio rerio)
Actinopterygii Dr.12345 35
ptprb 35
  • 53.46 (n)
  • 46.27 (a)
ptprb 36
  • 45 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Ptp10D 37
  • 28 (a)
Ptp4E 37
  • 29 (a)
Ptp52F 37
  • 40 (a)
Ptp10D 35
  • 44.94 (n)
  • 34.88 (a)
Ptp10D 36
  • 28 (a)
ManyToMany
Ptp4E 36
  • 25 (a)
ManyToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004246 35
  • 43.17 (n)
  • 33.31 (a)
worm
(Caenorhabditis elegans)
Secernentea B0207.1 37
  • 32 (a)
F47B3.1 37
  • 30 (a)
F47B3.6 37
  • 30 (a)
T27A3.5 37
  • 30 (a)
Y48G9A.9 37
  • 34 (a)
ZK354.8 37
  • 34 (a)
dep-1 36
  • 23 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5519 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.962 36
  • 55 (a)
OneToOne
Species with no ortholog for PTPRB:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PTPRB Gene

ENSEMBL:
Gene Tree for PTPRB (if available)
TreeFam:
Gene Tree for PTPRB (if available)

Paralogs for PTPRB Gene

Paralogs for PTPRB Gene

genes like me logo Genes that share paralogs with PTPRB: view

Variants for PTPRB Gene

Sequence variations from dbSNP and Humsavar for PTPRB Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs3109 -- 70,535,333(+) AGTTG(A/G)GTAGA intron-variant
rs367103 -- 70,527,153(-) AATAC(C/T)ATAAA intron-variant
rs369876 -- 70,521,567(+) TGTTT(A/G)CGCTG intron-variant
rs380780 -- 70,522,018(-) TAATT(G/T)ATCTG intron-variant
rs382199 -- 70,523,407(+) TTTTT(G/T)TTTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PTPRB Gene

Variant ID Type Subtype PubMed ID
nsv8986 CNV Gain+Loss 18304495
esv32743 CNV Gain 17666407
nsv509472 CNV Insertion 20534489
nsv820183 CNV Loss 19587683
esv271661 CNV Insertion 20981092
nsv518144 CNV Gain 19592680

Relevant External Links for PTPRB Gene

HapMap Linkage Disequilibrium report
PTPRB
Human Gene Mutation Database (HGMD)
PTPRB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PTPRB Gene

Disorders for PTPRB Gene

(1) University of Copenhagen DISEASES for PTPRB Gene

(6) Novoseek inferred disease relationships for PTPRB Gene

Disease -log(P) Hits PubMed IDs
glioblastoma 52 9
glioma 40.7 3
astrocytoma 36.1 1
intoxication 12.2 1
tumors 0 5

Relevant External Links for PTPRB

Genetic Association Database (GAD)
PTPRB
Human Genome Epidemiology (HuGE) Navigator
PTPRB
genes like me logo Genes that share disorders with PTPRB: view

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot and Genatlas for PTPRB Gene

Publications for PTPRB Gene

  1. Association of PTPRB gene polymorphism with drug addiction. (PMID: 18361428) Ishiguro H. … Uhl G.R. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2008) 3 23 48
  2. Tyrosine phosphatase beta regulates angiopoietin-Tie2 signaling in human endothelial cells. (PMID: 19116766) Yacyshyn O.K. … Stewart D.J. (Angiogenesis 2009) 3 4 23
  3. Junctional protein MAGI-3 interacts with receptor tyrosine phosphatase beta (RPTP beta) and tyrosine-phosphorylated proteins. (PMID: 12615970) Adamsky K. … Peles E. (J. Cell. Sci. 2003) 3 23
  4. Glial tumor cell adhesion is mediated by binding of the FNIII domain of receptor protein tyrosine phosphatase beta (RPTPbeta) to tenascin C. (PMID: 11313993) Adamsky K. … Peles E. (Oncogene 2001) 3 23
  5. Cloning of three human tyrosine phosphatases reveals a multigene family of receptor-linked protein-tyrosine-phosphatases expressed in brain. (PMID: 2169617) Kaplan R. … Schlessinger J. (Proc. Natl. Acad. Sci. U.S.A. 1990) 2 3

Products for PTPRB Gene

  • Addgene plasmids for PTPRB

Sources for PTPRB Gene

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