Aliases for ADAMTS9 Gene
Aliases for ADAMTS9 Gene
External Ids for ADAMTS9 Gene
- HGNC: 13202
- Entrez Gene: 56999
- Ensembl: ENSG00000163638
- OMIM: 605421
- UniProtKB: Q9P2N4
Previous GeneCards Identifiers for ADAMTS9 Gene
- GC03M063400
- GC03M063939
- GC03M064356
- GC03M064458
- GC03M064476
Summaries for ADAMTS9 Gene
-
This gene encodes a member of the ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) protein family. Members of the family share several distinct protein modules, including a propeptide region, a metalloproteinase domain, a disintegrin-like domain, and a thrombospondin type 1 (TS) motif. Individual members of this family differ in the number of C-terminal TS motifs, and some have unique C-terminal domains. Members of the ADAMTS family have been implicated in the cleavage of proteoglycans, the control of organ shape during development, and the inhibition of angiogenesis. This gene is localized to chromosome 3p14.3-p14.2, an area known to be lost in hereditary renal tumors. Alternative splicing results in multiple transcript variants encoding different isoforms that may undergo similar proteolytic processing. [provided by RefSeq, Jan 2016]
GeneCards Summary for ADAMTS9 Gene
ADAMTS9 (ADAM Metallopeptidase With Thrombospondin Type 1 Motif 9) is a Protein Coding gene. Among its related pathways are Infectious disease and Diseases associated with O-glycosylation of proteins. GO annotations related to this gene include metalloendopeptidase activity and endopeptidase activity. An important paralog of this gene is ADAMTS20.
UniProtKB/Swiss-Prot for ADAMTS9 Gene
-
Cleaves the large aggregating proteoglycans, aggrecan and versican. Has a protease-independent function in promoting the transport from the endoplasmic reticulum to the Golgi apparatus of a variety of secretory cargos.
No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADAMTS9 Gene
Genomics for ADAMTS9 Gene
Regulatory Elements for ADAMTS9 Gene
Enhancers for ADAMTS9 Gene
| GeneHancer Identifier | Score | Enhancer Sources | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Other Gene Targets for Enhancer |
|---|
Enhancers around ADAMTS9 on UCSC Golden Path with GeneCards custom track
Promoters for ADAMTS9 Gene
| Ensembl Regulatory Elements (ENSRs) | TSS Distance (bp) | Size (bp) | Binding Sites for Transcription Factors within promoters |
|---|
ENSRs around ADAMTS9 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the ADAMTS9 gene promoter:
Regulatory Element Products
Genomic Location for ADAMTS9 Gene
- Chromosome:
- 3
- Start:
- 64,515,654 bp from pter
- End:
- 64,688,000 bp from pter
- Size:
- 172,347 bases
- Orientation:
- Minus strand
Genomic View for ADAMTS9 Gene
Genes around ADAMTS9 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 3p14.1 by Ensembl
- 3p14.1 by Entrez Gene
- 3p14.1 by HGNC
ADAMTS9 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ADAMTS9 Gene
Proteins for ADAMTS9 Gene
-
Protein details for ADAMTS9 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9P2N4-ATS9_HUMAN
- Recommended name:
- A disintegrin and metalloproteinase with thrombospondin motifs 9
- Protein Accession:
- Q9P2N4
- A1L4L0
- B7ZVX9
- B9ZVN0
- Q9NR29
Protein attributes for ADAMTS9 Gene
- Size:
- 1935 amino acids
- Molecular mass:
- 216491 Da
- Cofactor:
- Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
- Quaternary structure:
- No Data Available
Protein Expression for ADAMTS9 Gene
Post-translational modifications for ADAMTS9 Gene
- Glycosylated. Can be O-fucosylated by POFUT2 on a serine or a threonine residue found within the consensus sequence C1-X(2)-(S/T)-C2-G of the TSP type-1 repeat domains where C1 and C2 are the first and second cysteine residue of the repeat, respectively. Fucosylated repeats can then be further glycosylated by the addition of a beta-1,3-glucose residue by the glucosyltransferase, B3GALTL. Fucosylation mediates the efficient secretion of ADAMTS family members. Also can be C-glycosylated with one or two mannose molecules on tryptophan residues within the consensus sequence W-X-X-W of the TPRs, and N-glycosylated. These other glycosylations can also facilitate secretion (By similarity).
- The precursor is cleaved by a furin endopeptidase.
- Glycosylation at Asn 112, Asn 135, Asn 271, Asn 749, Asn 840, Asn 1213, Asn 1267, Asn 1788, and Asn 1806
- Modification sites at PhosphoSitePlus
Other Protein References for ADAMTS9 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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-
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Assay Products
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Domains & Families for ADAMTS9 Gene
Gene Families for ADAMTS9 Gene
Protein Domains for ADAMTS9 Gene
Suggested Antigen Peptide Sequences for ADAMTS9 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9P2N4UniProtKB/Swiss-Prot:
ATS9_HUMAN :- The spacer domain and the TSP type-1 domains are important for a tight interaction with the extracellular matrix.
- Domain:
-
- The spacer domain and the TSP type-1 domains are important for a tight interaction with the extracellular matrix.
- The ancillary domains, including the TSRs domain, are required for specific extracellular localization and for its versicanase and aggrecanase activities.
- The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
- The GON domain mediates protease-independent function in ER to Golgi transport.
- Contains 1 disintegrin domain.
- Contains 1 GON domain.
- Contains 1 peptidase M12B domain.
- Contains 15 TSP type-1 domains.
Function for ADAMTS9 Gene
Molecular function for ADAMTS9 Gene
- UniProtKB/Swiss-Prot CatalyticActivity:
- Cleaves aggrecan at the 1838-Glu- -Ala-1839 site and versican at the 1428-Glu- -Ala-1429 site.
- UniProtKB/Swiss-Prot Function:
- Cleaves the large aggregating proteoglycans, aggrecan and versican. Has a protease-independent function in promoting the transport from the endoplasmic reticulum to the Golgi apparatus of a variety of secretory cargos.
Enzyme Numbers (IUBMB) for ADAMTS9 Gene
- EC 3.4.24.14 63
- EC 3.4.24.82 63
- EC 3.4.24.- 4
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004222 | metalloendopeptidase activity | IEA | -- |
Phenotypes for ADAMTS9 Gene
- MGI mutant phenotypes for ADAMTS9:
- inferred from 3 alleles
- GenomeRNAi human phenotypes for ADAMTS9:
-
- Increased vaccinia virus (VACV) infection
- Mildly decreased CFP-tsO45G cell surface transport
- Increased shRNA abundance (Z-score > 2)
- Dynamic nuclei (hole, folded or small irregular)
- Strongly decreased CFP-tsO45G cell surface transport
- Decreased shRNA abundance (Z-score < -2)
- Increased cilium length after serum starvation
Animal Model Products
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-
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-
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CRISPR Products
-
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-
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miRNA for ADAMTS9 Gene
- miRTarBase miRNAs that target ADAMTS9
-
- hsa-mir-29a-3p (MIRT005668)
- hsa-mir-183-3p (MIRT545136)
- hsa-mir-3613-3p (MIRT545137)
- hsa-mir-7-2-3p (MIRT545138)
- hsa-mir-5688 (MIRT545139)
- hsa-mir-7-1-3p (MIRT545140)
- hsa-mir-495-3p (MIRT545141)
- hsa-mir-3609 (MIRT545142)
- hsa-mir-548ah-5p (MIRT545143)
- hsa-mir-548t-5p (MIRT545144)
- hsa-mir-548az-5p (MIRT545145)
- hsa-mir-297 (MIRT707536)
- hsa-mir-3924 (MIRT707537)
- hsa-mir-190a-3p (MIRT707538)
- hsa-mir-3941 (MIRT707539)
- hsa-mir-223-5p (MIRT707540)
- hsa-mir-567 (MIRT707541)
- hsa-mir-511-3p (MIRT707542)
- hsa-mir-5011-5p (MIRT707543)
- hsa-mir-4789-3p (MIRT707544)
- hsa-mir-603 (MIRT707545)
- hsa-mir-362-3p (MIRT707546)
- hsa-mir-329-3p (MIRT707547)
- hsa-mir-8485 (MIRT707548)
miRNA Products
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Clone Products
- OriGene clones in human for ADAMTS9
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Flow Cytometry Products
No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ADAMTS9 Gene
Localization for ADAMTS9 Gene
Subcellular locations from UniProtKB/Swiss-Prot for ADAMTS9 Gene
- Secreted, extracellular space, extracellular matrix. Endoplasmic reticulum.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| endoplasmic reticulum | 3 |
| plasma membrane | 2 |
| cytosol | 1 |
| peroxisome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005783 | endoplasmic reticulum | IEA | -- |
| GO:0031012 | colocalizes_with extracellular matrix | IEA,ISS | 22261194 |
Pathways & Interactions for ADAMTS9 Gene
More details on SuperPathways for ADAMTS9Pathways by source for ADAMTS9 Gene
Interacting Proteins for ADAMTS9 Gene
| Symbol | External ID(s) | Details |
|---|---|---|
| LIMS1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006508 | proteolysis | IEA,IDA | 12514189 |
| GO:0006516 | glycoprotein catabolic process | TAS | 10936055 |
| GO:0007275 | multicellular organism development | TAS | 10936055 |
| GO:0045636 | positive regulation of melanocyte differentiation | IEA | -- |
No data available for SIGNOR curated interactions for ADAMTS9 Gene
Transcripts for ADAMTS9 Gene
mRNA/cDNA for ADAMTS9 Gene
- (3) REFSEQ mRNAs :
- (10) Additional mRNA sequences :
- (117) Selected AceView cDNA sequences:
- (10) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ADAMTS9 Gene
CRISPR Products
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miRNA Products
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Clone Products
- OriGene clones in human for ADAMTS9
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Expression for ADAMTS9 Gene
This gene is overexpressed in Pancreas (36.5) and Heart (32.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ADAMTS9 Gene
SOURCE GeneReport for Unigene cluster for ADAMTS9 Gene Hs.656071
mRNA Expression by UniProt/SwissProt for ADAMTS9 Gene
Q9P2N4-ATS9_HUMAN
Tissue specificity:
Highly expressed in all fetal tissues. Expressed in a number of adult tissues with highest expression in heart, placenta and skeletal muscle.
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-
OriGene qPCR primer pairs for ADAMTS9
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for ADAMTS9 Gene
Orthologs for ADAMTS9 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| cow (Bos Taurus) |
Mammalia | ADAMTS9 35 |
|
||
| ADAMTS9 36 |
|
OneToOne | |||
| dog (Canis familiaris) |
Mammalia | ADAMTS9 35 |
|
||
| ADAMTS9 36 |
|
OneToOne | |||
| mouse (Mus musculus) |
Mammalia | Adamts9 35 |
|
||
| Adamts9 16 |
|
||||
| Adamts9 36 |
|
OneToOne | |||
| chimpanzee (Pan troglodytes) |
Mammalia | ADAMTS9 35 |
|
||
| ADAMTS9 36 |
|
OneToOne | |||
| rat (Rattus norvegicus) |
Mammalia | Adamts9 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | ADAMTS9 36 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | ADAMTS9 36 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | ADAMTS9 35 |
|
||
| ADAMTS9 36 |
|
OneToOne | |||
| lizard (Anolis carolinensis) |
Reptilia | ADAMTS9 36 |
|
OneToOne | |
| zebrafish (Danio rerio) |
Actinopterygii | adamts9 35 |
|
||
| adamts9 36 |
|
OneToOne | |||
| fruit fly (Drosophila melanogaster) |
Insecta | CG6107 37 |
|
|
|
| worm (Caenorhabditis elegans) |
Secernentea | gon-1 35 |
|
- Species with no ortholog for ADAMTS9:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
Paralogs for ADAMTS9 Gene
Paralogs for ADAMTS9 Gene
(12) SIMAP similar genes for ADAMTS9 Gene using alignment to 3 proteins:
Variants for ADAMTS9 Gene
| SNP ID | Clin | Chr 03 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| VAR_047081 | -, - | ||||
| rs17071010 | - | 64,551,026(+) | CACCT(C/T)GCGGT | nc-transcript-variant, reference, missense | |
| rs6787633 | - | 64,546,800(+) | GGGCA(C/G/T)TCCCT | nc-transcript-variant, reference, missense | |
| rs17070967 | - | 64,541,599(+) | CCTCC(C/T)TGCAA | nc-transcript-variant, reference, missense | |
| rs3796381 | - | 64,541,336(-) | TCTCC(A/C/G)AGGTT | nc-transcript-variant, reference, missense |
Residual Variation Intolerance Score:
2.52% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
7.51;
82.26% of all genes are more intolerant (likely to be disease-causing)
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for ADAMTS9 Gene
Disorders for ADAMTS9 Gene
Relevant External Links for ADAMTS9
No disorders were found for ADAMTS9 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADAMTS9 Gene
Publications for ADAMTS9 Gene
- ADAMTS 9, a novel member of the ADAM-TS/Metallospondin gene family. (PMID: 10936055) Clark M.E. … Maki R.A. (Genomics 2000) 2 3 4 67
- High-resolution melting analysis of ADAMTS9 methylation levels in gastric, colorectal, and pancreatic cancers. (PMID: 19963134) Zhang C. … Wan J. (Cancer Genet. Cytogenet. 2010) 3 23
- ADAMTS9 is a cell-autonomously acting, anti-angiogenic metalloprotease expressed by microvascular endothelial cells. (PMID: 20093484) Koo B.H. … Apte S.S. (Am. J. Pathol. 2010) 3 23
- ADAMTS9 activation by interleukin 1 beta via NFATc1 in OUMS-27 chondrosarcoma cells and in human chondrocytes. (PMID: 19052845) Yaykasli K.O. … Ninomiya Y. (Mol. Cell. Biochem. 2009) 3 23
- Characterization of ADAMTS-9 and ADAMTS-20 as a distinct ADAMTS subfamily related to Caenorhabditis elegans GON-1. (PMID: 12514189) Somerville R.P. … Apte S.S. (J. Biol. Chem. 2003) 3 23
Products for ADAMTS9 Gene
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Sources for ADAMTS9 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
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- (29) RNAdb
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- (33) SAGE
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- (35) HomoloGene
- (36) PanEnsembl
- (37) euGenes
- (38) SGD
- (39) FlyBase
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- (41) Pseudogene
- (42) DGV
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- (44) HapMap
- (45) GenAtlas
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- (48) GAD
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- (52) eBioscience
- (53) Atlas
- (54) Cell Signaling Technology
- (55) GenBank
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- (64) Nature
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- (78) Sino Biological
- (79) GenScript
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- (81) Cloud-Clone Corp.
- (82) Enzo Life Sciences
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- (84) Proteopedia
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