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Aliases for PSMA6 Gene

Aliases for PSMA6 Gene

  • Proteasome (Prosome, Macropain) Subunit, Alpha Type, 6 2 3
  • PROS27 3 4 6
  • P27K 3 4 6
  • Multicatalytic Endopeptidase Complex Iota Chain 3 4
  • 27 KDa Prosomal Protein 3 4
  • Proteasome Iota Chain 3 4
  • Macropain Iota Chain 3 4
  • EC 3.4.25.1 4 64
  • PROS-27 3 4
  • Proteasome Subunit Alpha Type-6 3
  • Proteasome Subunit Iota 3
  • Macropain Subunit Iota 3
  • Prosomal P27K Protein 3
  • IOTA 3

External Ids for PSMA6 Gene

Summaries for PSMA6 Gene

Entrez Gene Summary for PSMA6 Gene

  • The proteasome is a multicatalytic proteinase complex with a highly ordered ring-shaped 20S core structure. The core structure is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes a member of the peptidase T1A family, that is a 20S core alpha subunit. Multiple transcript variants encoding several different isoforms have been found for this gene. A pseudogene has been identified on the Y chromosome. [provided by RefSeq, Aug 2013]

GeneCards Summary for PSMA6 Gene

PSMA6 (Proteasome (Prosome, Macropain) Subunit, Alpha Type, 6) is a Protein Coding gene. Diseases associated with PSMA6 include myocardial infarction. Among its related pathways are Signaling by GPCR and Downstream Signaling Events Of B Cell Receptor (BCR). GO annotations related to this gene include RNA binding and NF-kappaB binding.

UniProtKB/Swiss-Prot for PSMA6 Gene

  • The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity

Gene Wiki entry for PSMA6 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSMA6 Gene

Genomics for PSMA6 Gene

Genomic Location for PSMA6 Gene

Start:
35,278,558 bp from pter
End:
35,317,493 bp from pter
Size:
38,936 bases
Orientation:
Plus strand

Genomic View for PSMA6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PSMA6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSMA6 Gene

Regulatory Elements for PSMA6 Gene

Proteins for PSMA6 Gene

  • Protein details for PSMA6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P60900-PSA6_HUMAN
    Recommended name:
    Proteasome subunit alpha type-6
    Protein Accession:
    P60900
    Secondary Accessions:
    • B2R7J9
    • B4DQR4
    • B4DXJ9
    • P34062
    • Q6IB60

    Protein attributes for PSMA6 Gene

    Size:
    246 amino acids
    Molecular mass:
    27399 Da
    Quaternary structure:
    • The 26S proteasome consists of a 20S proteasome core and two 19S regulatory subunits. The 20S proteasome core is composed of 28 subunits that are arranged in four stacked rings, resulting in a barrel-shaped structure. The two end rings are each formed by seven alpha subunits, and the two central rings are each formed by seven beta subunits. The catalytic chamber with the active sites is on the inside of the barrel. Interacts with ALKBH4.

    Three dimensional structures from OCA and Proteopedia for PSMA6 Gene

    Alternative splice isoforms for PSMA6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PSMA6 Gene

Proteomics data for PSMA6 Gene at MOPED

Selected DME Specific Peptides for PSMA6 Gene

Post-translational modifications for PSMA6 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys30, Lys45, Lys55, Lys59, Lys102, Lys104, Lys116, Lys164, Lys171, and Lys181
  • Glycosylation at Ser5

Domains for PSMA6 Gene

Gene Families for PSMA6 Gene

HGNC:
  • PSM :Proteasome (prosome, macropain) subunits

Protein Domains for PSMA6 Gene

UniProtKB/Swiss-Prot:

PSA6_HUMAN
Family:
  • Belongs to the peptidase T1A family.:
    • P60900
genes like me logo Genes that share domains with PSMA6: view

Function for PSMA6 Gene

Molecular function for PSMA6 Gene

GENATLAS Biochemistry: multicatalytic proteinase complex (20S) proteasome (prosome,macropain) component,alpha type 6,subunit Pros27 (Iota),27.3 kDa
UniProtKB/Swiss-Prot CatalyticActivity: Cleavage of peptide bonds with very broad specificity.
UniProtKB/Swiss-Prot Function: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity

Enzyme Numbers (IUBMB) for PSMA6 Gene

Gene Ontology (GO) - Molecular Function for PSMA6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding NAS 7681138
GO:0004175 endopeptidase activity NAS 7681138
GO:0004298 threonine-type endopeptidase activity IEA --
GO:0005515 protein binding IPI 14733938
GO:0035639 purine ribonucleoside triphosphate binding NAS 7681138
genes like me logo Genes that share ontologies with PSMA6: view
genes like me logo Genes that share phenotypes with PSMA6: view

miRNA for PSMA6 Gene

miRTarBase miRNAs that target PSMA6

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for PSMA6 Gene

Localization for PSMA6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PSMA6 Gene

Cytoplasm. Nucleus. Cytoplasm, P-body. Note=Colocalizes with TRIM5 in the cytoplasmic bodies. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PSMA6 Gene COMPARTMENTS Subcellular localization image for PSMA6 gene
Compartment Confidence
nucleus 5
cytosol 4
mitochondrion 4
extracellular 1

Gene Ontology (GO) - Cellular Components for PSMA6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000502 proteasome complex IDA 17323924
GO:0000932 cytoplasmic mRNA processing body ISS --
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm TAS --
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with PSMA6: view

Pathways for PSMA6 Gene

SuperPathways for PSMA6 Gene

Superpath Contained pathways
1 CDK-mediated phosphorylation and removal of Cdc6
.78
.38
2 Chks in Checkpoint Regulation
3 Class I MHC mediated antigen processing and presentation
4 Cell Cycle, Mitotic
.62
5 Mitotic Metaphase and Anaphase
genes like me logo Genes that share pathways with PSMA6: view

Gene Ontology (GO) - Biological Process for PSMA6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000082 G1/S transition of mitotic cell cycle TAS --
GO:0000209 protein polyubiquitination TAS --
GO:0000278 mitotic cell cycle TAS --
GO:0002223 stimulatory C-type lectin receptor signaling pathway TAS --
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I TAS --
genes like me logo Genes that share ontologies with PSMA6: view

Transcripts for PSMA6 Gene

Unigene Clusters for PSMA6 Gene

Proteasome (prosome, macropain) subunit, alpha type, 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PSMA6 Gene

No ASD Table

Relevant External Links for PSMA6 Gene

GeneLoc Exon Structure for
PSMA6
ECgene alternative splicing isoforms for
PSMA6

Expression for PSMA6 Gene

mRNA expression in normal human tissues for PSMA6 Gene

mRNA differential expression in normal tissues according to GTEx for PSMA6 Gene

This gene is overexpressed in Muscle - Skeletal (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for PSMA6 Gene

SOURCE GeneReport for Unigene cluster for PSMA6 Gene Hs.446260

genes like me logo Genes that share expressions with PSMA6: view

Orthologs for PSMA6 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PSMA6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PSMA6 36
  • 99.59 (n)
  • 100 (a)
PSMA6 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PSMA6 36
  • 96.34 (n)
  • 100 (a)
PSMA6 37
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PSMA6 36
  • 96.61 (n)
  • 99.59 (a)
PSMA6 37
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Psma6 36
  • 93.63 (n)
  • 99.59 (a)
Psma6 16
Psma6 37
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PSMA6 37
  • 98 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PSMA6 37
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Psma6 36
  • 94.31 (n)
  • 100 (a)
chicken
(Gallus gallus)
Aves PSMA6 36
  • 86.99 (n)
  • 96.75 (a)
PSMA6 37
  • 96 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PSMA6 37
  • 92 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.15878 36
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC76321 36
psma6 36
  • 80.76 (n)
  • 92.68 (a)
zebrafish
(Danio rerio)
Actinopterygii psma6a 36
psma6a 37
  • 90 (a)
OneToMany
psma6b 37
  • 91 (a)
OneToMany
psma6l 37
  • 69 (a)
OneToMany
zgc:92716 36
  • 77.91 (n)
  • 91.06 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003935 36
  • 64.5 (n)
  • 73.58 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG30382 37
  • 67 (a)
OneToMany
Prosalpha1 36
  • 60.38 (n)
  • 67.21 (a)
Prosalpha1 37
  • 67 (a)
OneToMany
Prosalpha6 38
  • 64 (a)
worm
(Caenorhabditis elegans)
Secernentea pas-1 36
  • 56.37 (n)
  • 56.5 (a)
pas-1 37
  • 56 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AGL089W 36
  • 54.03 (n)
  • 55.42 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SCL1 36
  • 58.09 (n)
  • 56.02 (a)
SCL1 37
  • 52 (a)
OneToOne
SCL1 39
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A05027g 36
  • 55.14 (n)
  • 55 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7441 36
soybean
(Glycine max)
eudicotyledons Gma.17539 36
thale cress
(Arabidopsis thaliana)
eudicotyledons PAA1 36
  • 61.25 (n)
  • 64.23 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.6366 36
corn
(Zea mays)
Liliopsida Zm.3422 36
rice
(Oryza sativa)
Liliopsida Os.3704 36
Os03g0180400 36
  • 60.43 (n)
  • 60.57 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.6475 36
bread mold
(Neurospora crassa)
Ascomycetes NCU10061 36
  • 57.88 (n)
  • 62.76 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC646.16 36
  • 59.38 (n)
  • 59.24 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8137 37
  • 74 (a)
OneToOne
Species with no ortholog for PSMA6:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for PSMA6 Gene

ENSEMBL:
Gene Tree for PSMA6 (if available)
TreeFam:
Gene Tree for PSMA6 (if available)

Paralogs for PSMA6 Gene

genes like me logo Genes that share paralogs with PSMA6: view

No data available for Paralogs for PSMA6 Gene

Variants for PSMA6 Gene

Sequence variations from dbSNP and Humsavar for PSMA6 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs4665 -- 35,313,047(+) TTTGA(A/G)CAGAC reference, synonymous-codon, intron-variant
rs13393 -- 35,314,450(+) CCTAA(A/G)TTCAG reference, synonymous-codon, nc-transcript-variant
rs743225 -- 35,305,975(+) AATCC(C/T)ATCAC intron-variant
rs743226 -- 35,306,355(-) ggtct(C/T)gaact intron-variant
rs743227 -- 35,306,479(-) tgatc(C/T)gcctg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PSMA6 Gene

Variant ID Type Subtype PubMed ID
nsv456205 CNV Loss 19166990
esv2661597 CNV Deletion 23128226

Relevant External Links for PSMA6 Gene

HapMap Linkage Disequilibrium report
PSMA6
Human Gene Mutation Database (HGMD)
PSMA6

Disorders for PSMA6 Gene

(1) OMIM Diseases for PSMA6 Gene (602855)

(1) MalaCards Diseases for PSMA6 Gene

Search for PSMA6 Gene in MalaCards »

Relevant External Links for PSMA6

Genetic Association Database (GAD)
PSMA6
Human Genome Epidemiology (HuGE) Navigator
PSMA6
genes like me logo Genes that share disorders with PSMA6: view

No data available for UniProtKB/Swiss-Prot for PSMA6 Gene

Publications for PSMA6 Gene

  1. The prosomal RNA-binding protein p27K is a member of the alpha-type human prosomal gene family. (PMID: 7681138) Bey F. … Scherrer K. (Mol. Gen. Genet. 1993) 3 4 23
  2. The primary structures of four subunits of the human, high-molecular- weight proteinase, macropain (proteasome), are distinct but homologous. (PMID: 1888762) DeMartino G.N. … Slaughter C.A. (Biochim. Biophys. Acta 1991) 2 3 4
  3. Human proteasome subunits from 2-dimensional gels identified by partial sequencing. (PMID: 7811265) Kristensen P. … Hendil K.B. (Biochem. Biophys. Res. Commun. 1994) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry. (PMID: 17370265) Denis N.J. … Figeys D. (Proteomics 2007) 3 4

Products for PSMA6 Gene

Sources for PSMA6 Gene

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